Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0068421 Helianthus annuus HOM05D006321 ORTHO05D007929 8.4e-87 323.6 152 100.0
HanXRQChr16g0529271 Helianthus annuus HOM05D006321 ORTHO05D007929 1.3e-82 309.7 152 94.7
ECA240G2363 Erigeron canadensis HOM05D006321 ORTHO05D007929 1.3e-79 299.7 152 90.8
ECA234G0872 Erigeron canadensis HOM05D006321 ORTHO05D007929 2.4e-78 295.4 152 89.5
Lsat_1_v5_gn_7_55681 Lactuca sativa HOM05D006321 ORTHO05D007929 2.7e-77 292.0 151 88.7
Dinv25432 Davidia involucrata HOM05D006321 ORTHO05D007929 1.2e-72 276.6 152 80.9
Sc03g0007150 Simmondsia chinensis HOM05D006321 ORTHO05D007929 4.5e-72 274.6 152 78.3
MSTRG.10445 Avicennia marina HOM05D006321 ORTHO05D007929 2.2e-71 272.3 152 80.9
Rhsim01G0118600 Rhododendron simsii HOM05D006321 ORTHO05D007929 2.2e-71 272.3 152 77.6
COL.COLO4_27457 Corchorus olitorius HOM05D006321 ORTHO05D007929 3.8e-71 271.6 152 79.6
Nitab4.5_0002365g0010 Nicotiana tabacum HOM05D006321 ORTHO05D007929 3.8e-71 271.6 148 79.7
CSS0046955 Camellia sinensis var. sinensis HOM05D006321 ORTHO05D007929 4.9e-71 271.2 150 78.7
CAN.G279.32 Capsicum annuum HOM05D006321 ORTHO05D007929 4.9e-71 271.2 148 79.7
PGSC0003DMG400028738 Solanum tuberosum HOM05D006321 ORTHO05D007929 4.9e-71 271.2 151 77.5
CiPaw.08G033200 Carya illinoinensis HOM05D006321 ORTHO05D007929 8.4e-71 270.4 152 78.9
Nitab4.5_0000366g0180 Nicotiana tabacum HOM05D006321 ORTHO05D007929 8.4e-71 270.4 148 80.4
CAN.G547.21 Capsicum annuum HOM05D006321 ORTHO05D007929 1.1e-70 270.0 151 78.1
CSS0021189 Camellia sinensis var. sinensis HOM05D006321 ORTHO05D007929 1.4e-70 269.6 150 78.7
arahy.Tifrunner.gnm1.ann1.N3I1N2 Arachis hypogaea HOM05D006321 ORTHO05D007929 3.2e-70 268.5 152 78.9
COL.COLO4_07534 Corchorus olitorius HOM05D006321 ORTHO05D007929 3.2e-70 268.5 151 79.5
Glyma.01G110600 Glycine max HOM05D006321 ORTHO05D007929 3.2e-70 268.5 152 78.9
CSS0019729 Camellia sinensis var. sinensis HOM05D006321 ORTHO05D007929 4.2e-70 268.1 150 78.7
Solyc07g008910.3 Solanum lycopersicum HOM05D006321 ORTHO05D007929 5.5e-70 267.7 151 77.5
arahy.Tifrunner.gnm1.ann1.CI6UTV Arachis hypogaea HOM05D006321 ORTHO05D007929 7.1e-70 267.3 152 78.3
QL02p047686 Quercus lobata HOM05D006321 ORTHO05D007929 9.3e-70 266.9 151 76.2
VMungo0540G0928 Vigna mungo HOM05D006321 ORTHO05D007929 2.1e-69 265.8 152 77.0
Atru.chr7.791 Acer truncatum HOM05D006321 ORTHO05D007929 3.5e-69 265.0 148 77.7
Eucgr.C00122 Eucalyptus grandis HOM05D006321 ORTHO05D007929 4.6e-69 264.6 149 76.5
BcaC04g19986 Brassica carinata HOM05D006321 ORTHO05D007929 6.0e-69 264.2 152 75.7
A10p14640 Brassica napus HOM05D006321 ORTHO05D007929 6.0e-69 264.2 152 75.0
BraA10t43551Z Brassica rapa HOM05D006321 ORTHO05D007929 6.0e-69 264.2 152 75.0
Ciclev10008911m.g Citrus clementina HOM05D006321 ORTHO05D007929 6.0e-69 264.2 151 76.2
Cc06_g21570 Coffea canephora HOM05D006321 ORTHO05D007929 6.0e-69 264.2 148 78.4
Duzib251G0486 Durio zibethinus HOM05D006321 ORTHO05D007929 6.0e-69 264.2 153 78.4
Thhalv10014893m.g Eutrema salsugineum HOM05D006321 ORTHO05D007929 7.9e-69 263.8 152 75.0
Gohir.A06G171500 Gossypium hirsutum HOM05D006321 ORTHO05D007929 7.9e-69 263.8 152 77.0
Gorai.010G210200 Gossypium raimondii HOM05D006321 ORTHO05D007929 7.9e-69 263.8 152 77.0
Carub.0008s1773 Capsella rubella HOM05D006321 ORTHO05D007929 1.0e-68 263.5 152 75.0
TAR622G0244 Trochodendron aralioides HOM05D006321 ORTHO05D007929 1.0e-68 263.5 152 76.3
AL8G33200 Arabidopsis lyrata HOM05D006321 ORTHO05D007929 1.3e-68 263.1 152 74.3
CARHR271020 Cardamine hirsuta HOM05D006321 ORTHO05D007929 1.3e-68 263.1 152 73.7
Glyma.03G076300 Glycine max HOM05D006321 ORTHO05D007929 1.8e-68 262.7 152 76.3
MBI17_g07973_MAGBIO Magnolia biondii HOM05D006321 ORTHO05D007929 1.8e-68 262.7 152 76.3
Phvul.006G013600 Phaseolus vulgaris HOM05D006321 ORTHO05D007929 1.8e-68 262.7 152 77.0
EL10Ac5g11827 Beta vulgaris HOM05D006321 ORTHO05D007929 3.0e-68 261.9 152 75.7
Gohir.D06G179600 Gossypium hirsutum HOM05D006321 ORTHO05D007929 3.0e-68 261.9 152 76.3
Sp6g18970 Schrenkiella parvula HOM05D006321 ORTHO05D007929 3.0e-68 261.9 152 74.3
Thecc.09G184700 Theobroma cacao HOM05D006321 ORTHO05D007929 3.9e-68 261.5 146 79.5
TWI60G1509 Tripterygium wilfordii HOM05D006321 ORTHO05D007929 3.9e-68 261.5 152 77.0
AT5G57230 Arabidopsis thaliana HOM05D006321 ORTHO05D007929 5.1e-68 261.2 152 73.7
Potri.018G143500 Populus trichocarpa HOM05D006321 ORTHO05D007929 5.1e-68 261.2 148 77.7
BcaB08g36085 Brassica carinata HOM05D006321 ORTHO05D007929 6.7e-68 260.8 152 74.3
Aqoxy3G01064 Aquilegia oxysepala HOM05D006321 ORTHO05D007929 8.7e-68 260.4 152 75.0
Lalb_Chr04g0263391 Lupinus albus HOM05D006321 ORTHO05D007929 8.7e-68 260.4 152 76.3
GSVIVG01010872001 Vitis vinifera HOM05D006321 ORTHO05D007929 8.7e-68 260.4 146 77.4
Sed0024765 Sechium edule HOM05D006321 ORTHO05D007929 1.1e-67 260.0 145 77.2
AUR62030694 Chenopodium quinoa HOM05D006321 ORTHO05D007929 1.9e-67 259.2 152 73.7
Prupe.1G076700 Prunus persica HOM05D006321 ORTHO05D007929 1.9e-67 259.2 149 75.8
Medtr3g465100 Medicago truncatula HOM05D006321 ORTHO05D007929 2.5e-67 258.8 152 75.7
Migut.L01889 Erythranthe guttata HOM05D006321 ORTHO05D007929 3.3e-67 258.5 149 77.2
FvH4_4g07380 Fragaria vesca HOM05D006321 ORTHO05D007929 3.3e-67 258.5 149 77.2
FAN12G2844 Fragaria x ananassa HOM05D006321 ORTHO05D007929 3.3e-67 258.5 149 77.2
FAN22G1279 Fragaria x ananassa HOM05D006321 ORTHO05D007929 3.3e-67 258.5 149 77.2
Psat4g027120 Pisum sativum HOM05D006321 ORTHO05D007929 3.3e-67 258.5 152 74.3
RcHm_v2.0_Chr4g0399821 Rosa chinensis HOM05D006321 ORTHO05D007929 3.3e-67 258.5 149 77.2
AUR62030699 Chenopodium quinoa HOM05D006321 ORTHO05D007929 4.3e-67 258.1 152 73.0
Phvul.003G138800 Phaseolus vulgaris HOM05D006321 ORTHO05D007929 4.3e-67 258.1 152 75.0
Phvul.003G139178 Phaseolus vulgaris HOM05D006321 ORTHO05D007929 4.3e-67 258.1 152 75.0
Psat2g182520 Pisum sativum HOM05D006321 ORTHO05D004512 4.3e-67 258.1 151 74.2
THA.LOC104817778 Tarenaya hassleriana HOM05D006321 ORTHO05D007929 9.6e-67 256.9 153 74.5
Ca_14974_v3 Cicer arietinum L. HOM05D006321 ORTHO05D007929 1.3e-66 256.5 152 75.7
Aa31LG3G13120 Aethionema arabicum HOM05D006321 ORTHO05D007929 1.6e-66 256.1 152 73.7
MELO3C012967.2 Cucumis melo HOM05D006321 ORTHO05D007929 1.6e-66 256.1 142 78.2
Manes.02G106300 Manihot esculenta HOM05D006321 ORTHO05D007929 1.6e-66 256.1 152 74.3
C09p49090 Brassica napus HOM05D006321 ORTHO05D007929 2.1e-66 255.8 160 71.2
FAN07G2214 Fragaria x ananassa HOM05D006321 ORTHO05D007929 2.1e-66 255.8 146 78.1
CsaV3_3G025050 Cucumis sativus L. HOM05D006321 ORTHO05D007929 2.8e-66 255.4 145 76.6
HPP92_002000 Vanilla planifolia HOM05D006321 ORTHO05D007929 2.8e-66 255.4 150 74.0
BolC9t57758H Brassica oleracea HOM05D006321 ORTHO05D007929 4.8e-66 254.6 157 71.3
SGA_v2.0_scaffold21G09650 Striga asiatica HOM05D006321 ORTHO05D007929 8.2e-66 253.8 149 75.2
TPR.G32885 Trifolium pratense HOM05D006321 ORTHO05D007929 8.2e-66 253.8 152 75.0
Potri.006G076300 Populus trichocarpa HOM05D006321 ORTHO05D007929 2.4e-65 252.3 148 74.3
Lj6g0010246 Lotus japonicus HOM05D006321 ORTHO05D007929 4.1e-65 251.5 152 75.7
PSO339G6079 Papaver somniferum HOM05D006321 ORTHO05D007929 5.3e-65 251.1 153 75.2
PGR142G1933 Punica granatum HOM05D006321 ORTHO05D007929 1.2e-64 250.0 148 76.4
MD16G1249800 Malus domestica HOM05D006321 ORTHO05D007929 3.4e-64 248.4 148 75.0
CANSAT11G0316 Cannabis sativa HOM05D006321 ORTHO05D007929 5.9e-64 247.7 153 71.9
PSO384G3851 Papaver somniferum HOM05D006321 ORTHO05D007929 1.3e-63 246.5 153 73.2
Ah.12g059430 Amaranthus hybridus HOM05D006321 ORTHO05D007929 6.5e-63 244.2 153 72.5
Actinidia01283 Actinidia chinensis HOM05D006321 ORTHO05D007929 1.9e-62 242.7 152 73.7
Hund14984 Selenicereus undatus HOM05D006321 ORTHO05D007929 1.9e-62 242.7 202 57.4
CDE06G2300 Ceratophyllum demersum HOM05D006321 ORTHO05D007929 2.5e-62 242.3 138 78.3
Zm00001eb161640 Zea mays HOM05D006321 ORTHO05D007929 3.6e-61 238.4 152 67.8
Os06g0482200 Oryza sativa ssp. japonica HOM05D006321 ORTHO05D007929 1.0e-60 236.9 146 69.9
Os10g0162834 Oryza sativa ssp. japonica HOM05D006321 ORTHO05D007929 1.8e-60 236.1 146 69.9
unitig_736.g22252 Utricularia gibba HOM05D006321 ORTHO05D007929 6.7e-60 234.2 138 74.6
Nn2g12444 Nelumbo nucifera HOM05D006321 ORTHO05D007929 1.3e-58 229.9 126 81.0
Sopen07g004840 Solanum pennellii HOM05D003168 ORTHO05D003590 2.8e-58 228.8 125 79.2
Cpa.g.sc95.16 Carica papaya HOM05D006321 ORTHO05D007929 1.4e-57 226.5 152 67.1
AUR62036340 Chenopodium quinoa HOM05D006321 ORTHO05D007929 5.3e-57 224.6 126 76.2
MD13G1243200 Malus domestica HOM05D006321 ORTHO05D007929 2.6e-56 222.2 129 74.4
SEGI_34333 Sequoiadendron giganteum HOM05D006321 ORTHO05D007929 1.7e-55 219.5 148 64.9
Sabra18G0117000 Salix brachista HOM05D003168 ORTHO05D003525 2.1e-53 212.6 121 76.9
Psat5g235880 Pisum sativum HOM05D006321 ORTHO05D007929 3.6e-53 211.8 134 70.1
Migut.G01073 Erythranthe guttata HOM05D006321 ORTHO05D007929 1.1e-51 206.8 116 79.3
Haze_22010 Corylus avellana HOM05D006321 ORTHO05D007929 2.0e-51 206.1 143 66.4
Mapoly0003s0233 Marchantia polymorpha HOM05D006321 ORTHO05D007929 1.4e-49 199.9 142 59.2
Oeu044678.1 Olea europaea HOM05D006321 ORTHO05D007929 2.0e-48 196.1 105 81.0
vmacro20823 Vaccinium macrocarpon HOM05D006321 ORTHO05D007929 2.6e-48 195.7 104 79.8
Pp3c22_13020 Physcomitrium patens HOM05D006321 ORTHO05D007929 1.0e-47 193.7 143 57.3
Mapoly0003s0169 Marchantia polymorpha HOM05D006321 ORTHO05D007929 1.3e-47 193.4 142 58.5
Oeu030095.1 Olea europaea HOM05D006321 ORTHO05D007929 5.0e-47 191.4 106 80.2
Sabra06G0057200 Salix brachista HOM05D006321 ORTHO05D007929 5.5e-46 188.0 179 52.0
FAN17G2672 Fragaria x ananassa HOM05D006321 ORTHO05D007929 1.8e-44 183.0 149 59.7
Aqoxy108s003 Aquilegia oxysepala HOM05D006321 ORTHO05D007929 3.9e-44 181.8 138 62.3
Peaxi162Scf00324g00017 Petunia axillaris HOM05D006321 ORTHO05D007929 5.2e-44 181.4 102 76.5
ATR1152G025 Amborella trichopoda HOM05D006321 ORTHO05D007929 2.0e-43 179.5 96 80.2
Lj6A87G16 Lonicera japonica HOM05D006321 ORTHO05D007929 9.7e-43 177.2 95 78.9
PSO541G2755 Papaver somniferum HOM05D006321 ORTHO05D007929 1.3e-42 176.8 105 74.3
DCAR_005801 Daucus carota HOM05D006321 ORTHO05D007929 2.9e-39 165.6 92 79.3
CBR_g19745 Chara braunii HOM05D006321 ORTHO05D007929 1.2e-35 153.7 132 55.3
COL.COLO4_32845 Corchorus olitorius HOM05D006321 ORTHO05D007929 9.1e-33 144.1 76 84.2
BcaB05g22329 Brassica carinata HOM05D006321 ORTHO05D007929 1.6e-32 143.3 148 50.0
Dinv41168 Davidia involucrata HOM05D000015 ORTHO05D003525 1.0e-31 140.6 77 80.5
TAR629G2308 Trochodendron aralioides HOM05D006321 ORTHO05D007929 3.8e-31 138.7 126 55.6
Lj6A100T20 Lonicera japonica HOM05D006321 ORTHO05D007929 3.0e-28 129.0 73 76.7
Sopen00g012850 Solanum pennellii HOM05D006321 ORTHO05D007929 5.4e-17 91.7 57 68.4
BolC2t07570H Brassica oleracea HOM05D006321 ORTHO05D007929 1.6e-13 80.1 60 56.7
C02p14450 Brassica napus HOM05D006321 ORTHO05D007929 4.3e-06 55.5 71 38.0


User provided reference genes

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