Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 1.7e-45 185.7 96 100.0
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 1.0e-21 106.7 107 59.8
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 9.5e-20 100.1 89 61.8
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 9.5e-20 100.1 103 57.3
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 4.0e-18 94.7 106 55.7
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 6.8e-18 94.0 106 54.7
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 3.4e-17 91.7 106 54.7
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 6.4e-16 87.4 105 49.5
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 8.3e-16 87.0 105 49.5
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 1.4e-15 86.3 101 50.5
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 1.4e-15 86.3 105 49.5
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 2.4e-15 85.5 106 51.9
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 2.4e-15 85.5 104 52.9
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 4.1e-15 84.7 81 56.8
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 5.4e-15 84.3 91 52.7
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 5.4e-15 84.3 106 48.1
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 5.4e-15 84.3 106 48.1
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 5.4e-15 84.3 95 52.6
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 5.4e-15 84.3 99 52.5
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 9.2e-15 83.6 84 52.4
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 9.2e-15 83.6 87 51.7
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.2e-14 83.2 103 51.5
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.6e-14 82.8 103 44.7
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 2.1e-14 82.4 91 51.6
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 2.1e-14 82.4 107 50.5
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 2.1e-14 82.4 99 50.5
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 2.7e-14 82.0 76 53.9
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 3.5e-14 81.6 105 47.6
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 3.5e-14 81.6 105 47.6
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 4.6e-14 81.3 81 51.9
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 4.6e-14 81.3 92 51.1
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 4.6e-14 81.3 104 47.1
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 6.0e-14 80.9 93 51.6
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 7.8e-14 80.5 87 54.0
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 7.8e-14 80.5 92 46.7
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 7.8e-14 80.5 107 46.7
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 7.8e-14 80.5 88 52.3
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 1.0e-13 80.1 91 51.6
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 1.0e-13 80.1 105 46.7
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 1.0e-13 80.1 101 47.5
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 1.0e-13 80.1 91 47.3
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 1.0e-13 80.1 96 50.0
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 1.0e-13 80.1 107 45.8
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 1.0e-13 80.1 93 48.4
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 1.0e-13 80.1 82 51.2
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 1.3e-13 79.7 107 48.6
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 1.3e-13 79.7 96 47.9
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.3e-13 79.7 92 48.9
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 1.3e-13 79.7 94 50.0
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 1.7e-13 79.3 89 51.7
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 1.7e-13 79.3 105 48.6
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 1.7e-13 79.3 94 50.0
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 2.3e-13 79.0 95 48.4
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 2.3e-13 79.0 92 51.1
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 2.3e-13 79.0 107 44.9
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 2.3e-13 79.0 91 50.5
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 2.3e-13 79.0 90 48.9
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 3.0e-13 78.6 78 51.3
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 3.0e-13 78.6 88 47.7
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 3.0e-13 78.6 80 52.5
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 3.0e-13 78.6 105 48.6
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 3.0e-13 78.6 85 48.2
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 3.9e-13 78.2 72 54.2
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 3.9e-13 78.2 105 44.8
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 5.1e-13 77.8 68 57.4
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 5.1e-13 77.8 83 55.4
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 5.1e-13 77.8 96 49.0
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 6.6e-13 77.4 96 45.8
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 6.6e-13 77.4 100 46.0
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 6.6e-13 77.4 75 49.3
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 8.6e-13 77.0 84 48.8
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 8.6e-13 77.0 76 50.0
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 8.6e-13 77.0 96 49.0
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 1.1e-12 76.6 95 47.4
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 1.1e-12 76.6 84 51.2
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 1.1e-12 76.6 92 44.6
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 1.1e-12 76.6 92 44.6
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 1.1e-12 76.6 104 46.2
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 1.1e-12 76.6 68 55.9
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 1.1e-12 76.6 74 51.4
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 1.5e-12 76.3 95 47.4
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.5e-12 76.3 77 53.2
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 1.5e-12 76.3 60 58.3
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 1.9e-12 75.9 101 44.6
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 1.9e-12 75.9 94 47.9
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 2.5e-12 75.5 97 48.5
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 2.5e-12 75.5 91 47.3
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 3.3e-12 75.1 92 47.8
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 3.3e-12 75.1 90 50.0
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 3.3e-12 75.1 84 47.6
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 3.3e-12 75.1 96 47.9
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 4.3e-12 74.7 104 43.3
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 4.3e-12 74.7 79 53.2
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 4.3e-12 74.7 76 50.0
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 5.6e-12 74.3 90 46.7
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 5.6e-12 74.3 92 51.1
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 7.3e-12 73.9 92 51.1
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 7.3e-12 73.9 67 53.7
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 7.3e-12 73.9 105 47.6
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 9.6e-12 73.6 75 50.7
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 9.6e-12 73.6 83 50.6
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 1.2e-11 73.2 91 46.2
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 1.2e-11 73.2 91 46.2
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 1.6e-11 72.8 101 47.5
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 2.1e-11 72.4 103 41.7
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 2.1e-11 72.4 110 48.2
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 2.1e-11 72.4 101 47.5
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 2.8e-11 72.0 113 47.8
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 2.8e-11 72.0 74 52.7
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 3.6e-11 71.6 57 57.9
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 3.6e-11 71.6 96 45.8
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 4.7e-11 71.2 88 47.7
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 8.1e-11 70.5 76 48.7
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 8.1e-11 70.5 65 52.3
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 8.1e-11 70.5 85 43.5
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 1.1e-10 70.1 105 45.7
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 1.1e-10 70.1 106 42.5
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 1.4e-10 69.7 57 56.1
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 1.4e-10 69.7 93 44.1
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 1.4e-10 69.7 94 43.6
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 1.8e-10 69.3 100 43.0
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 1.8e-10 69.3 70 48.6
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 1.8e-10 69.3 61 52.5
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 1.8e-10 69.3 102 45.1
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 2.4e-10 68.9 94 43.6
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 3.1e-10 68.6 108 42.6
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 6.8e-10 67.4 56 58.9
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 6.8e-10 67.4 91 41.8
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 8.9e-10 67.0 100 49.0
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 1.2e-09 66.6 95 43.2
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 1.5e-09 66.2 99 47.5
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 1.5e-09 66.2 76 47.4
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 2.6e-09 65.5 70 50.0
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 3.4e-09 65.1 100 41.0
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 4.4e-09 64.7 103 39.8
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 3.8e-08 61.6 89 43.8
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 4.9e-08 61.2 104 40.4
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 4.9e-08 61.2 104 40.4
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 8.4e-08 60.5 95 41.1
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 8.4e-08 60.5 54 64.8
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.1e-07 60.1 104 40.4
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 7.1e-07 57.4 36 77.8
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea HOM05D004289 ORTHO05D005141 1.6e-06 56.2 94 42.6
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.6e-06 56.2 70 45.7
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 3.5e-06 55.1 98 44.9
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 4.6e-06 54.7 103 37.9
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 4.6e-06 54.7 64 35.9
Cc02_g23340 Coffea canephora HOM05D004289 ORTHO05D005141 6.0e-06 54.3 107 39.3
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 7.8e-06 53.9 61 49.2


User provided reference genes

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