Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0067421 Helianthus annuus HOM05D005213 ORTHO05D006229 6.0e-170 600.9 334 100.0
HanXRQChr08g0228011 Helianthus annuus HOM05D005213 ORTHO05D006229 1.6e-85 320.5 354 54.5
ECA240G0440 Erigeron canadensis HOM05D005213 ORTHO05D006229 3.2e-78 296.2 371 52.8
Gorai.009G039700 Gossypium raimondii HOM05D005213 ORTHO05D006229 6.2e-66 255.4 416 46.4
Gohir.D05G039200 Gossypium hirsutum HOM05D005213 ORTHO05D006229 4.0e-65 252.7 418 45.7
TAR624G0676 Trochodendron aralioides HOM05D005213 ORTHO05D006229 8.9e-65 251.5 380 46.6
Cpa.g.sc82.19 Carica papaya HOM05D005213 ORTHO05D006229 1.2e-64 251.1 389 46.8
Ciclev10008490m.g Citrus clementina HOM05D005213 ORTHO05D006229 2.9e-63 246.5 390 46.9
TWI34G0479 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 3.7e-63 246.1 396 45.5
Manes.16G087800 Manihot esculenta HOM05D005213 ORTHO05D006229 4.9e-63 245.7 405 48.4
Prupe.1G401300 Prunus persica HOM05D005213 ORTHO05D006229 4.9e-63 245.7 411 45.3
Potri.006G217900 Populus trichocarpa HOM05D005213 ORTHO05D006229 3.2e-62 243.0 404 44.6
Thecc.09G066400 Theobroma cacao HOM05D005213 ORTHO05D006229 9.2e-62 241.5 418 46.9
Cc08_g07800 Coffea canephora HOM05D005213 ORTHO05D006229 5.1e-60 235.7 412 45.1
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 4.3e-59 232.6 396 46.5
Duzib168G1397 Durio zibethinus HOM05D005213 ORTHO05D006229 5.6e-59 232.3 360 45.8
Duzib187G1454 Durio zibethinus HOM05D005213 ORTHO05D006229 7.3e-59 231.9 404 46.3
MD08G1046900 Malus domestica HOM05D005213 ORTHO05D006229 3.6e-58 229.6 422 42.9
Cfa023359 Carpinus fangiana HOM05D005213 ORTHO05D006229 1.4e-57 227.6 409 45.5
CiPaw.16G068600 Carya illinoinensis HOM05D005213 ORTHO05D006229 1.4e-57 227.6 413 44.6
Eucgr.C00749 Eucalyptus grandis HOM05D005213 ORTHO05D006229 3.1e-57 226.5 427 43.8
Peaxi162Scf00922g00016 Petunia axillaris HOM05D005213 ORTHO05D006229 4.0e-57 226.1 384 43.5
Haze_13552 Corylus avellana HOM05D005213 ORTHO05D006229 1.2e-56 224.6 403 46.4
MD15G1047100 Malus domestica HOM05D005213 ORTHO05D006229 3.4e-56 223.0 425 39.5
Migut.A00332 Erythranthe guttata HOM05D005213 ORTHO05D006229 1.7e-55 220.7 391 44.0
RcHm_v2.0_Chr6g0304741 Rosa chinensis HOM05D005213 ORTHO05D006229 8.4e-55 218.4 401 44.6
FAN20G0215 Fragaria x ananassa HOM05D005213 ORTHO05D006229 1.4e-54 217.6 401 44.9
Dinv41845 Davidia involucrata HOM05D005213 ORTHO05D006229 5.4e-54 215.7 452 41.6
Gohir.D06G080700 Gossypium hirsutum HOM05D005213 ORTHO05D006229 9.2e-54 214.9 369 40.9
Gorai.010G094100 Gossypium raimondii HOM05D005213 ORTHO05D006229 9.2e-54 214.9 369 40.9
DCAR_001248 Daucus carota HOM05D005213 ORTHO05D006229 1.6e-53 214.2 400 39.8
FvH4_2g37040 Fragaria vesca HOM05D005213 ORTHO05D006229 1.6e-53 214.2 401 45.1
CAN.G1059.3 Capsicum annuum HOM05D005213 ORTHO05D006229 2.7e-53 213.4 376 40.7
ECA234G4818 Erigeron canadensis HOM05D005213 ORTHO05D006229 4.6e-53 212.6 349 45.3
FAN15G1397 Fragaria x ananassa HOM05D005213 ORTHO05D006229 4.6e-53 212.6 403 43.7
Gohir.A06G081000 Gossypium hirsutum HOM05D005213 ORTHO05D006229 4.6e-53 212.6 371 42.0
FAN27G3126 Fragaria x ananassa HOM05D005213 ORTHO05D006229 6.0e-53 212.2 401 44.9
Nn8g38551 Nelumbo nucifera HOM05D005213 ORTHO05D006229 6.0e-53 212.2 400 44.8
GSVIVG01035506001 Vitis vinifera HOM05D005213 ORTHO05D006229 1.7e-52 210.7 370 40.5
TWI32G0481 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 3.9e-52 209.5 383 45.4
COL.COLO4_21169 Corchorus olitorius HOM05D005213 ORTHO05D006229 1.1e-51 208.0 426 41.3
EL10Ac5g11257 Beta vulgaris HOM05D005213 ORTHO05D006229 4.3e-51 206.1 402 38.1
Duzib150G1003 Durio zibethinus HOM05D005213 ORTHO05D006229 5.6e-51 205.7 360 46.4
Aqoxy7G04081 Aquilegia oxysepala HOM05D005213 ORTHO05D006229 1.6e-50 204.1 409 40.6
Ca_15799_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 2.8e-50 203.4 416 38.7
Lj1g0011388 Lotus japonicus HOM05D005213 ORTHO05D006229 2.4e-49 200.3 395 42.8
Manes.03G055700 Manihot esculenta HOM05D005213 ORTHO05D006229 4.0e-49 199.5 362 44.5
Nn6g35650 Nelumbo nucifera HOM05D005213 ORTHO05D006229 5.2e-49 199.1 398 40.5
Glyma.06G058600 Glycine max HOM05D005213 ORTHO05D006229 8.9e-49 198.4 401 39.2
HanXRQChr10g0309951 Helianthus annuus HOM05D005213 ORTHO05D006229 2.0e-48 197.2 398 39.9
Glyma.04G057900 Glycine max HOM05D005213 ORTHO05D006229 4.4e-48 196.1 412 41.5
Phvul.009G084600 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 1.7e-47 194.1 393 41.0
Oeu020105.1 Olea europaea HOM05D005213 ORTHO05D006229 2.9e-47 193.4 348 40.8
TPR.G21422 Trifolium pratense HOM05D005213 ORTHO05D006229 8.4e-47 191.8 379 41.7
Lalb_Chr11g0063421 Lupinus albus HOM05D005213 ORTHO05D006229 1.4e-46 191.0 364 40.7
Hund02523 Selenicereus undatus HOM05D005213 ORTHO05D006229 1.4e-46 191.0 320 42.5
Nitab4.5_0000508g0090 Nicotiana tabacum HOM05D005213 ORTHO05D006229 4.2e-46 189.5 365 41.1
Medtr3g105580 Medicago truncatula HOM05D005213 ORTHO05D006229 7.1e-46 188.7 330 45.8
PSO386G0069 Papaver somniferum HOM05D005213 ORTHO05D006229 2.1e-45 187.2 441 37.4
Lj7P206T8 Lonicera japonica HOM05D005213 ORTHO05D006229 1.3e-44 184.5 302 42.1
Rhsim04G0156600 Rhododendron simsii HOM05D005213 ORTHO05D006229 1.3e-44 184.5 418 35.9
CDE05G3316 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 5.1e-44 182.6 379 36.7
Psat5g033280 Pisum sativum HOM05D005213 ORTHO05D006229 8.7e-44 181.8 336 44.6
VMungo1309G2063 Vigna mungo HOM05D005213 ORTHO05D006229 3.6e-42 176.4 388 39.4
PGR142G1942 Punica granatum HOM05D005213 ORTHO05D006229 4.8e-42 176.0 396 40.4
SGA_v2.0_scaffold22G09922 Striga asiatica HOM05D005213 ORTHO05D006229 3.1e-41 173.3 368 37.0
ATR0681G043 Amborella trichopoda HOM05D005213 ORTHO05D006229 6.9e-41 172.2 421 34.7
CsaV3_6G031800 Cucumis sativus L. HOM05D005213 ORTHO05D006229 9.0e-41 171.8 328 39.3
Nitab4.5_0007212g0010 Nicotiana tabacum HOM05D005213 ORTHO05D006229 1.5e-40 171.0 368 38.6
Sc10g0009530 Simmondsia chinensis HOM05D005213 ORTHO05D006229 2.2e-39 167.2 341 37.8
Haze_18367 Corylus avellana HOM05D005213 ORTHO05D006229 3.8e-39 166.4 366 37.2
AUR62032196 Chenopodium quinoa HOM05D005213 ORTHO05D006229 6.4e-39 165.6 353 37.4
PSO223G0037 Papaver somniferum HOM05D005213 ORTHO05D006229 8.4e-39 165.2 418 35.9
Lalb_Chr22g0349651 Lupinus albus HOM05D005213 ORTHO05D006229 1.1e-38 164.9 368 38.3
CANSAT25G2504 Cannabis sativa HOM05D005213 ORTHO05D006229 6.0e-37 159.1 380 41.3
CSS0041342 Camellia sinensis var. sinensis HOM05D005213 ORTHO05D006229 8.7e-36 155.2 453 38.0
THA.LOC104810950 Tarenaya hassleriana HOM05D005213 ORTHO05D006229 8.7e-36 155.2 366 39.9
AUR62036963 Chenopodium quinoa HOM05D005213 ORTHO05D006229 2.5e-35 153.7 347 35.4
Cfa017841 Carpinus fangiana HOM05D005213 ORTHO05D006229 2.8e-34 150.2 342 37.7
ClCG08G009670 Citrullus lanatus HOM05D005213 ORTHO05D006229 4.8e-34 149.4 368 32.9
Sed0001538 Sechium edule HOM05D005213 ORTHO05D006229 8.1e-34 148.7 299 39.1
vmacro08659 Vaccinium macrocarpon HOM05D005213 ORTHO05D006229 9.0e-33 145.2 329 40.1
Hma1.2p1_0920F.1_g236590 Hydrangea macrophylla HOM05D005213 ORTHO05D006229 2.0e-32 144.1 390 32.8
TPR.G38861 Trifolium pratense HOM05D005213 ORTHO05D006229 2.6e-32 143.7 389 37.0
ECA236G4272 Erigeron canadensis HOM05D005213 ORTHO05D006229 7.6e-32 142.1 264 42.0
Solyc08g067270.3 Solanum lycopersicum HOM05D005213 ORTHO05D006229 2.2e-31 140.6 187 45.5
Oeu022129.1 Olea europaea HOM05D005213 ORTHO05D006229 5.5e-30 136.0 298 37.6
Psat6g023400 Pisum sativum HOM05D005213 ORTHO05D006229 9.3e-30 135.2 317 36.6
MSTRG.11768 Avicennia marina HOM05D005213 ORTHO05D006229 1.6e-29 134.4 289 35.3
HanXRQChr09g0261901 Helianthus annuus HOM05D005213 ORTHO05D006229 2.1e-29 134.0 275 37.5
MELO3C026560.2 Cucumis melo HOM05D005213 ORTHO05D006229 6.0e-29 132.5 316 35.4
Medtr1g014750 Medicago truncatula HOM05D005213 ORTHO05D006229 7.9e-29 132.1 353 37.1
SalBow8G0306 Salvia bowleyana HOM05D005213 ORTHO05D006229 1.1e-27 128.3 334 36.5
CDE05G3450 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 1.5e-27 127.9 371 31.0
Oeu030214.1 Olea europaea HOM05D005213 ORTHO05D006229 8.1e-26 122.1 351 31.9
unitig_32.g10930 Utricularia gibba HOM05D005213 ORTHO05D006229 1.4e-25 121.3 285 35.8
Zm00001eb019450 Zea mays HOM05D005213 ORTHO05D006229 2.4e-25 120.6 443 34.1
Sopen08g021200 Solanum pennellii HOM05D005213 ORTHO05D006229 4.0e-25 119.8 107 57.0
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 9.0e-25 118.6 311 33.1
BolC2t07127H Brassica oleracea HOM05D005213 ORTHO05D006229 3.8e-23 113.2 300 34.7
BcaC03g13850 Brassica carinata HOM05D005213 ORTHO05D006229 3.2e-22 110.2 288 34.0
Actinidia26432 Actinidia chinensis HOM05D005213 ORTHO05D006229 1.2e-21 108.2 122 46.7
Gohir.A05G037666 Gossypium hirsutum HOM05D005213 ORTHO05D006229 1.2e-21 108.2 162 43.2
AT5G21280 Arabidopsis thaliana HOM05D005213 ORTHO05D006229 3.5e-21 106.7 349 33.0
BraA03t10361Z Brassica rapa HOM05D005213 ORTHO05D006229 6.0e-21 105.9 286 33.2
BNapus_Darmor_BZH_scaffold_38p00940 Brassica napus HOM05D005213 ORTHO05D006229 3.0e-20 103.6 346 32.7
BraA02t05631Z Brassica rapa HOM05D005213 ORTHO05D006229 3.0e-20 103.6 346 32.7
BcaB05g22758 Brassica carinata HOM05D005213 ORTHO05D006229 6.7e-20 102.4 291 34.4
BcaC01g06616 Brassica carinata HOM05D005213 ORTHO05D006229 1.1e-19 101.7 286 32.9
C03p12080 Brassica napus HOM05D005213 ORTHO05D006229 1.1e-19 101.7 286 32.9
BolC3t13679H Brassica oleracea HOM05D005213 ORTHO05D006229 1.1e-19 101.7 286 32.9
BcaB08g36461 Brassica carinata HOM05D005213 ORTHO05D006229 1.5e-19 101.3 333 31.8
Thhalv10014216m.g Eutrema salsugineum HOM05D005213 ORTHO05D006229 2.5e-19 100.5 344 37.2
AL6G32940 Arabidopsis lyrata HOM05D005213 ORTHO05D006229 3.3e-19 100.1 344 34.9
CARHR191550 Cardamine hirsuta HOM05D005213 ORTHO05D006229 3.3e-19 100.1 356 30.9
BraA10t43954Z Brassica rapa HOM05D005213 ORTHO05D006229 1.6e-18 97.8 336 29.8
Carub.0006s1962 Capsella rubella HOM05D005213 ORTHO05D006229 4.8e-18 96.3 345 33.3
A10p18740 Brassica napus HOM05D005213 ORTHO05D006229 8.2e-18 95.5 336 29.5
A03p10500 Brassica napus HOM05D005213 ORTHO05D006229 1.8e-17 94.4 295 32.2
CDE11G0900 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 2.4e-17 94.0 218 38.1
Actinidia27819 Actinidia chinensis HOM05D005213 ORTHO05D006229 3.1e-17 93.6 121 53.7
Atru.chr7.1814 Acer truncatum HOM05D005213 ORTHO05D006229 4.1e-17 93.2 104 58.7
Phvul.001G044200 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 4.1e-17 93.2 253 32.0
C09p54690 Brassica napus HOM05D005213 ORTHO05D006229 6.9e-17 92.4 305 30.8
BolC9t58333H Brassica oleracea HOM05D005213 ORTHO05D006229 6.9e-17 92.4 305 30.8
BcaC04g19528 Brassica carinata HOM05D005213 ORTHO05D006229 9.0e-17 92.0 333 29.7
HPP92_013274 Vanilla planifolia HOM05D005213 ORTHO05D006229 1.0e-15 88.6 273 29.7
Aa31LG1G13440 Aethionema arabicum HOM05D005213 ORTHO05D006229 2.9e-15 87.0 259 32.4
Sp6g23210 Schrenkiella parvula HOM05D005213 ORTHO05D006229 2.5e-14 84.0 92 55.4
unitig_747.g21889 Utricularia gibba HOM05D005213 ORTHO05D006229 3.2e-14 83.6 309 30.1
Ca_13089_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 5.5e-14 82.8 302 28.8
Lalb_Chr08g0244621 Lupinus albus HOM05D005213 ORTHO05D006229 5.5e-14 82.8 107 42.1
SGA_v2.0_scaffold4G02181 Striga asiatica HOM05D005213 ORTHO05D006229 1.9e-11 74.3 344 27.9
BraA03t10362Z Brassica rapa HOM05D005213 ORTHO05D006229 2.5e-11 73.9 41 90.2
BcaB01g04752 Brassica carinata HOM05D005213 ORTHO05D006229 4.3e-11 73.2 238 31.9
Migut.E01467 Erythranthe guttata HOM05D005213 ORTHO05D006229 2.2e-10 70.9 351 27.9
CsaV3_4G036220 Cucumis sativus L. HOM05D005213 ORTHO05D006229 4.8e-10 69.7 323 27.9
arahy.Tifrunner.gnm1.ann1.698XEU Arachis hypogaea HOM05D005213 ORTHO05D006229 3.4e-08 63.5 354 28.0
unitig_0.g2816 Utricularia gibba HOM05D005213 ORTHO05D006229 3.4e-08 63.5 298 29.9
MELO3C016931.2 Cucumis melo HOM05D005213 ORTHO05D006229 4.5e-08 63.2 322 26.4
arahy.Tifrunner.gnm1.ann1.3D63PE Arachis hypogaea HOM05D005213 ORTHO05D006229 2.9e-07 60.5 328 27.1
Zm00001eb109280 Zea mays HOM05D005213 ORTHO05D006229 2.9e-07 60.5 43 76.7
Phvul.001G044300 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 1.1e-06 58.5 199 30.2
Phvul.001G044400 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 1.9e-06 57.8 360 23.9
HPP92_004172 Vanilla planifolia HOM05D001722 ORTHO05D001910 3.2e-06 57.0 231 23.8
VMungo0477G0001 Vigna mungo HOM05D005213 ORTHO05D006229 5.5e-06 56.2 213 29.6


User provided reference genes

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