Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0067181 Helianthus annuus HOM05D005024 ORTHO05D006396 2.0e-308 1061.6 534 100.0
Lsat_1_v5_gn_7_59161 Lactuca sativa HOM05D005024 ORTHO05D006396 4.4e-223 778.1 540 75.6
ECA240G2599 Erigeron canadensis HOM05D005024 ORTHO05D006396 4.1e-213 745.0 500 76.2
Eucgr.C00744 Eucalyptus grandis HOM05D005024 ORTHO05D006396 5.6e-178 628.2 555 60.2
CSS0015942 Camellia sinensis var. sinensis HOM05D005024 ORTHO05D006396 2.6e-175 619.4 546 60.4
Manes.16G087100 Manihot esculenta HOM05D005024 ORTHO05D006396 7.6e-175 617.8 553 61.5
Potri.006G218800 Populus trichocarpa HOM05D005024 ORTHO05D006396 2.1e-172 609.8 556 59.4
Atru.chr7.1825 Acer truncatum HOM05D005024 ORTHO05D006396 2.7e-172 609.4 553 60.4
Psat5g034920 Pisum sativum HOM05D005024 ORTHO05D006396 1.3e-171 607.1 528 61.4
Manes.03G056600 Manihot esculenta HOM05D005024 ORTHO05D006396 3.9e-171 605.5 554 58.1
RcHm_v2.0_Chr6g0304801 Rosa chinensis HOM05D005024 ORTHO05D006396 4.3e-170 602.1 550 58.5
Glyma.06G058100 Glycine max HOM05D005024 ORTHO05D006396 9.6e-170 600.9 554 58.3
Cc08_g06760 Coffea canephora HOM05D005024 ORTHO05D006396 1.2e-169 600.5 560 58.8
TWI34G1336 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 1.6e-169 600.1 551 59.0
Ciclev10007934m.g Citrus clementina HOM05D005024 ORTHO05D006396 3.1e-168 595.9 552 59.2
FAN15G2531 Fragaria x ananassa HOM05D005024 ORTHO05D006396 1.2e-167 594.0 595 54.1
Duzib150G0504 Durio zibethinus HOM05D005024 ORTHO05D006396 1.7e-166 590.1 558 57.9
FvH4_2g36960 Fragaria vesca HOM05D005024 ORTHO05D006396 1.7e-166 590.1 550 57.3
VMungo1309G0309 Vigna mungo HOM05D005024 ORTHO05D006396 2.9e-166 589.3 554 57.0
Glyma.04G057500 Glycine max HOM05D005024 ORTHO05D006396 4.9e-166 588.6 514 60.1
MSTRG.11771 Avicennia marina HOM05D005024 ORTHO05D006396 8.4e-166 587.8 559 57.4
Nn8g38600 Nelumbo nucifera HOM05D005024 ORTHO05D006396 1.1e-165 587.4 555 57.5
HanXRQChr05g0136401 Helianthus annuus HOM05D005024 ORTHO05D006396 1.4e-165 587.0 578 56.9
Lj1g0011589 Lotus japonicus HOM05D005024 ORTHO05D006396 1.6e-164 583.6 530 60.2
Duzib168G0917 Durio zibethinus HOM05D005024 ORTHO05D006396 2.1e-164 583.2 559 57.2
FAN27G2149 Fragaria x ananassa HOM05D005024 ORTHO05D006396 2.1e-164 583.2 584 54.5
Dinv41847 Davidia involucrata HOM05D005024 ORTHO05D006396 2.7e-164 582.8 526 60.5
Gohir.D07G018500 Gossypium hirsutum HOM05D005024 ORTHO05D006396 2.7e-164 582.8 553 57.0
DCAR_001244 Daucus carota HOM05D005024 ORTHO05D006396 4.6e-164 582.0 563 56.5
Gorai.001G019200 Gossypium raimondii HOM05D005024 ORTHO05D006396 7.8e-164 581.3 553 57.0
Medtr3g105400 Medicago truncatula HOM05D005024 ORTHO05D006396 7.8e-164 581.3 543 58.9
ECA236G2474 Erigeron canadensis HOM05D005024 ORTHO05D006396 1.3e-163 580.5 539 57.3
TWI63G0562 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 1.3e-163 580.5 560 57.9
ClCG08G009730 Citrullus lanatus HOM05D005024 ORTHO05D006396 2.3e-163 579.7 577 56.2
MD15G1047400 Malus domestica HOM05D005024 ORTHO05D006396 3.0e-163 579.3 548 58.4
Lalb_Chr08g0244691 Lupinus albus HOM05D005024 ORTHO05D006396 8.7e-163 577.8 515 60.2
arahy.Tifrunner.gnm1.ann1.JR430F Arachis hypogaea HOM05D005024 ORTHO05D006396 1.1e-162 577.4 553 57.1
MD08G1046400 Malus domestica HOM05D005024 ORTHO05D006396 1.5e-162 577.0 573 56.4
FAN20G2081 Fragaria x ananassa HOM05D005024 ORTHO05D006396 2.5e-162 576.2 597 52.9
Ca_15807_v3 Cicer arietinum L. HOM05D005024 ORTHO05D006396 7.3e-162 574.7 529 58.4
Gohir.A07G018700 Gossypium hirsutum HOM05D005024 ORTHO05D006396 7.3e-162 574.7 553 56.1
CiPaw.15G090700 Carya illinoinensis HOM05D005024 ORTHO05D006396 2.8e-161 572.8 519 60.1
MELO3C011496.2 Cucumis melo HOM05D005024 ORTHO05D006396 1.1e-160 570.9 568 55.1
arahy.Tifrunner.gnm1.ann1.Q4799Z Arachis hypogaea HOM05D005024 ORTHO05D006396 1.8e-160 570.1 553 56.6
PGR142G1044 Punica granatum HOM05D005024 ORTHO05D006396 6.9e-160 568.2 557 56.6
SalBow4G3344 Salvia bowleyana HOM05D005024 ORTHO05D006396 9.9e-159 564.3 593 54.1
PSO401G0002 Papaver somniferum HOM05D005024 ORTHO05D006396 2.2e-158 563.1 561 54.7
PSO724G1181 Papaver somniferum HOM05D005024 ORTHO05D006396 2.2e-158 563.1 559 54.2
PSO789G0001 Papaver somniferum HOM05D005024 ORTHO05D006396 3.8e-158 562.4 563 54.5
Migut.A00327 Erythranthe guttata HOM05D005024 ORTHO05D006396 8.4e-158 561.2 546 57.7
Gohir.A05G037800 Gossypium hirsutum HOM05D005024 ORTHO05D006396 7.1e-157 558.1 545 56.1
Phvul.009G083900 Phaseolus vulgaris HOM05D005024 ORTHO05D006396 2.1e-156 556.6 476 60.3
Nitab4.5_0004346g0050 Nicotiana tabacum HOM05D005024 ORTHO05D006396 8.7e-155 551.2 554 56.7
Sed0007384 Sechium edule HOM05D005024 ORTHO05D006396 8.7e-155 551.2 599 51.8
Oeu045334.2 Olea europaea HOM05D005024 ORTHO05D006396 1.1e-154 550.8 572 54.2
Lalb_Chr23g0268051 Lupinus albus HOM05D005024 ORTHO05D006396 2.8e-153 546.2 514 56.8
Sabra06G0168600 Salix brachista HOM05D005024 ORTHO05D006396 6.2e-153 545.0 571 54.1
Gorai.009G039800 Gossypium raimondii HOM05D005024 ORTHO05D006396 2.4e-152 543.1 536 55.8
Sc23g0006070 Simmondsia chinensis HOM05D005024 ORTHO05D006396 2.4e-149 533.1 555 53.5
Aqoxy4G00037 Aquilegia oxysepala HOM05D005024 ORTHO05D006396 1.3e-147 527.3 498 56.2
GSVIVG01035495001 Vitis vinifera HOM05D005024 ORTHO05D006396 5.1e-147 525.4 452 61.1
Prupe.1G401800 Prunus persica HOM05D005024 ORTHO05D006396 8.7e-147 524.6 556 54.0
COL.COLO4_21162 Corchorus olitorius HOM05D005024 ORTHO05D006396 9.6e-146 521.2 554 51.6
Os09g0440200 Oryza sativa ssp. japonica HOM05D005024 ORTHO05D006396 2.1e-145 520.0 501 53.9
Nitab4.5_0000508g0040 Nicotiana tabacum HOM05D005024 ORTHO05D006396 3.7e-145 519.2 551 55.0
Gohir.D08G268300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 4.0e-144 515.8 555 53.2
Gorai.004G286000 Gossypium raimondii HOM05D005024 ORTHO05D006396 4.0e-144 515.8 555 53.2
Zm00001eb314080 Zea mays HOM05D005024 ORTHO05D006396 7.1e-141 505.0 503 51.7
Sopen08g021170 Solanum pennellii HOM05D005024 ORTHO05D006396 1.6e-140 503.8 456 58.8
CsaV3_6G031850 Cucumis sativus L. HOM05D005024 ORTHO05D006396 5.1e-139 498.8 562 51.8
BcaB06g28091 Brassica carinata HOM05D005024 ORTHO05D006396 3.3e-138 496.1 508 52.6
Solyc08g067240.4 Solanum lycopersicum HOM05D005024 ORTHO05D006396 3.3e-138 496.1 555 52.6
THA.LOC104819895 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 3.1e-136 489.6 525 51.2
MSTRG.25847 Avicennia marina HOM05D005024 ORTHO05D006396 1.5e-135 487.3 546 51.8
BcaC02g08288 Brassica carinata HOM05D005024 ORTHO05D006396 1.5e-135 487.3 522 51.5
CARHR115110 Cardamine hirsuta HOM05D005024 ORTHO05D006396 2.0e-135 486.9 497 52.5
Sp4g06550 Schrenkiella parvula HOM05D005024 ORTHO05D006396 2.6e-135 486.5 500 52.2
A04p20310 Brassica napus HOM05D005024 ORTHO05D006396 1.3e-134 484.2 521 51.4
BraA04t17610Z Brassica rapa HOM05D005024 ORTHO05D006396 1.3e-134 484.2 521 51.4
AT2G26270 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 2.9e-134 483.0 513 51.1
C04p56010 Brassica napus HOM05D005024 ORTHO05D006396 2.9e-134 483.0 522 51.0
BolC4t27134H Brassica oleracea HOM05D005024 ORTHO05D006396 2.9e-134 483.0 522 51.0
Gohir.D05G039300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 3.8e-134 482.6 535 51.6
Aa31LG5G9530 Aethionema arabicum HOM05D005024 ORTHO05D006396 3.9e-131 472.6 506 52.4
SEGI_27832 Sequoiadendron giganteum HOM05D005024 ORTHO05D006396 2.5e-130 469.9 544 50.7
Lj7C207G3 Lonicera japonica HOM05D005024 ORTHO05D006396 7.4e-130 468.4 526 52.1
EL10Ac2g02404 Beta vulgaris HOM05D005024 ORTHO05D006396 4.5e-127 459.1 561 46.9
THA.LOC104810953 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 7.9e-124 448.4 548 47.8
Cpa.g.sc82.16 Carica papaya HOM05D005024 ORTHO05D006396 5.1e-123 445.7 415 56.9
MBI19_g09934_MAGBIO Magnolia biondii HOM05D005024 ORTHO05D006396 1.4e-120 437.6 560 46.6
Peaxi162Scf00922g00210 Petunia axillaris HOM05D005024 ORTHO05D006396 3.2e-117 426.4 529 49.7
CiPaw.05G157300 Carya illinoinensis HOM05D005024 ORTHO05D006396 1.2e-116 424.5 550 47.6
ATR0053G058 Amborella trichopoda HOM05D005024 ORTHO05D006396 5.2e-115 419.1 466 49.6
Lsat_1_v5_gn_8_70380 Lactuca sativa HOM05D005024 ORTHO05D006396 8.8e-115 418.3 446 53.8
PGSC0003DMG400007379 Solanum tuberosum HOM05D005024 ORTHO05D006396 2.8e-113 413.3 369 59.6
Thecc.09G065700 Theobroma cacao HOM05D005024 ORTHO05D006396 2.8e-113 413.3 403 54.8
AL5G21960 Arabidopsis lyrata HOM05D005024 ORTHO05D006396 6.3e-113 412.1 573 43.5
Ah.07g205360 Amaranthus hybridus HOM05D005024 ORTHO05D006396 8.2e-113 411.8 510 46.7
AT3G43930 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 8.2e-113 411.8 547 45.0
BcaB08g35274 Brassica carinata HOM05D005024 ORTHO05D006396 8.2e-113 411.8 461 48.4
Gohir.A08G247100 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.1e-112 411.4 431 52.9
Thhalv10011063m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 2.4e-112 410.2 533 46.5
TAR624G0706 Trochodendron aralioides HOM05D005024 ORTHO05D006396 2.9e-110 403.3 462 52.4
SMO169G0310 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 9.7e-106 388.3 519 42.2
Pp3c6_19110 Physcomitrium patens HOM05D005024 ORTHO05D006396 5.9e-103 379.0 557 42.4
HPP92_013024 Vanilla planifolia HOM05D005024 ORTHO05D006396 5.9e-103 379.0 421 48.9
Oeu030211.1 Olea europaea HOM05D005024 ORTHO05D006396 2.9e-102 376.7 470 48.3
SGA_v2.0_scaffold147G36313 Striga asiatica HOM05D005024 ORTHO05D006396 2.7e-100 370.2 483 46.4
AagrBONN_evm.TU.Sc2ySwM_228.2412 Anthoceros agrestis HOM05D005024 ORTHO05D006396 8.0e-100 368.6 511 40.9
Carub.0004s0614 Capsella rubella HOM05D005024 ORTHO05D006396 8.6e-94 348.6 412 47.8
Thhalv10001999m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 2.5e-93 347.1 411 46.7
Rhsim06G0092200 Rhododendron simsii HOM05D005024 ORTHO05D006396 9.2e-88 328.6 476 44.3
CBR_g17947 Chara braunii HOM05D005024 ORTHO05D006396 8.6e-86 322.0 596 35.7
Pp3c3_23860 Physcomitrium patens HOM05D005024 ORTHO05D006396 3.3e-85 320.1 536 37.9
SHI28014 Sapria himalayana HOM05D005024 ORTHO05D006396 8.3e-81 305.4 389 46.0
TPR.G31221 Trifolium pratense HOM05D005024 ORTHO05D006396 7.0e-80 302.4 221 69.7
Haze_18325 Corylus avellana HOM05D005024 ORTHO05D006396 2.3e-78 297.4 426 45.3
CiPaw.05G156800 Carya illinoinensis HOM05D005024 ORTHO05D006396 3.9e-78 296.6 265 60.4
vmacro21130 Vaccinium macrocarpon HOM05D005024 ORTHO05D006396 1.2e-74 285.0 312 52.2
AUR62020277 Chenopodium quinoa HOM05D005024 ORTHO05D006396 5.8e-74 282.7 436 39.9
AUR62037728 Chenopodium quinoa HOM05D005024 ORTHO05D006396 1.2e-71 275.0 290 51.4
Rhsim06G0128300 Rhododendron simsii HOM05D005024 ORTHO05D006396 8.3e-65 252.3 368 42.9
CDE07G0506 Ceratophyllum demersum HOM05D005024 ORTHO05D006396 3.1e-59 233.8 342 40.1
unitig_46.g18535 Utricularia gibba HOM05D005024 ORTHO05D006396 4.0e-51 206.8 336 41.7
unitig_46.g18534 Utricularia gibba HOM05D005024 ORTHO05D006396 1.6e-47 194.9 151 63.6
Carub.0005s0971 Capsella rubella HOM05D005024 ORTHO05D006396 1.1e-43 182.2 191 50.3
CAN.G348.11 Capsicum annuum HOM05D005024 ORTHO05D006396 3.8e-41 173.7 328 37.2
TPR.G3563 Trifolium pratense HOM05D005024 ORTHO05D006396 1.2e-34 152.1 140 62.9
SMO336G0001 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 3.9e-30 137.1 356 29.8
TPR.G26130 Trifolium pratense HOM05D005024 ORTHO05D006396 1.9e-29 134.8 97 67.0
SHI08483 Sapria himalayana HOM05D005024 ORTHO05D006396 1.3e-25 122.1 215 34.0
PSO198G0133 Papaver somniferum HOM05D005024 ORTHO05D006396 5.5e-24 116.7 108 59.3
CBR_g899 Chara braunii HOM05D005024 ORTHO05D006396 3.9e-22 110.5 176 38.1
Cpa.g.sc82.17 Carica papaya HOM05D005024 ORTHO05D006396 8.2e-20 102.8 71 73.2
AUR62037727 Chenopodium quinoa HOM05D005024 ORTHO05D006396 4.1e-19 100.5 69 73.9
GSVIVG01035496001 Vitis vinifera HOM05D005024 ORTHO05D006396 9.0e-19 99.4 66 77.3
AUR62020278 Chenopodium quinoa HOM05D005024 ORTHO05D006396 1.2e-18 99.0 67 74.6
Carub.0004s0613 Capsella rubella HOM05D005024 ORTHO05D006396 2.5e-16 91.3 58 72.4
ATR0053G014 Amborella trichopoda HOM05D005024 ORTHO05D006396 7.9e-15 86.3 67 62.7
TPR.G26129 Trifolium pratense HOM05D005024 ORTHO05D006396 2.8e-12 77.8 82 53.7
Psat6g040520 Pisum sativum HOM05D001245 ORTHO05D004475 1.2e-10 72.4 124 37.9
Cfa018127 Carpinus fangiana HOM05D001245 ORTHO05D004475 2.0e-10 71.6 115 35.7
QL09p032547 Quercus lobata HOM05D001245 ORTHO05D004475 3.4e-10 70.9 172 30.8
SGA_v2.0_scaffold354G49742 Striga asiatica HOM05D001245 ORTHO05D004475 7.7e-10 69.7 97 40.2
Medtr1g029630 Medicago truncatula HOM05D001245 ORTHO05D004475 1.0e-09 69.3 124 36.3
TPR.G30550 Trifolium pratense HOM05D001245 ORTHO05D004475 1.3e-09 68.9 173 32.4
CANSAT80G2764 Cannabis sativa HOM05D001245 ORTHO05D004475 1.7e-09 68.6 167 29.9
Medtr7g090980 Medicago truncatula HOM05D001245 ORTHO05D004475 2.2e-09 68.2 124 35.5
PGR042G0290 Punica granatum HOM05D001245 ORTHO05D004475 2.2e-09 68.2 93 38.7
Ciclev10000159m.g Citrus clementina HOM05D001245 ORTHO05D004475 2.9e-09 67.8 189 29.6
AL2G37520 Arabidopsis lyrata HOM05D001245 ORTHO05D004475 1.4e-08 65.5 94 40.4
CANSAT25G1503 Cannabis sativa HOM05D001245 ORTHO05D004475 1.4e-08 65.5 95 36.8
PSO170G6194 Papaver somniferum HOM05D001245 ORTHO05D004475 1.4e-08 65.5 107 38.3
Oeu009633.1 Olea europaea HOM05D001245 ORTHO05D004475 2.5e-08 64.7 92 39.1
Glyma.16G005600 Glycine max HOM05D001245 ORTHO05D004475 3.2e-08 64.3 93 39.8
Manes.02G168200 Manihot esculenta HOM05D001245 ORTHO05D004475 3.2e-08 64.3 175 29.7
Atru.chr13.1560 Acer truncatum HOM05D001245 ORTHO05D004475 4.2e-08 63.9 116 33.6
Lj1g0014366 Lotus japonicus HOM05D001245 ORTHO05D004475 5.5e-08 63.5 94 40.4
PSO528G0248 Papaver somniferum HOM05D001245 ORTHO05D004475 5.5e-08 63.5 107 37.4
THA.LOC104800232 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 5.5e-08 63.5 94 37.2
THA.LOC104810225 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 5.5e-08 63.5 94 37.2
Phvul.002G078200 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 7.2e-08 63.2 124 33.9
GSVIVG01008809001 Vitis vinifera HOM05D001245 ORTHO05D004475 7.2e-08 63.2 93 37.6
Aqoxy6G00310 Aquilegia oxysepala HOM05D001245 ORTHO05D004475 9.4e-08 62.8 93 37.6
CSS0013013 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 1.6e-07 62.0 93 39.8
CSS0038833 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 1.6e-07 62.0 93 39.8
Cc02_g29380 Coffea canephora HOM05D001245 ORTHO05D004475 2.1e-07 61.6 94 37.2
Phvul.001G070600 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 2.1e-07 61.6 124 33.9
FvH4_2g27821 Fragaria vesca HOM05D001245 ORTHO05D004475 2.7e-07 61.2 114 35.1
Migut.N01819 Erythranthe guttata HOM05D001245 ORTHO05D004475 3.6e-07 60.8 94 35.1
Actinidia03424 Actinidia chinensis HOM05D001245 ORTHO05D004475 4.7e-07 60.5 93 37.6
Duzib093G0162 Durio zibethinus HOM05D001245 ORTHO05D004475 4.7e-07 60.5 93 35.5
Thecc.08G132800 Theobroma cacao HOM05D001245 ORTHO05D004475 6.1e-07 60.1 93 35.5
vmacro10605 Vaccinium macrocarpon HOM05D001245 ORTHO05D004475 6.1e-07 60.1 167 28.7
Aa31LG4G7350 Aethionema arabicum HOM05D001245 ORTHO05D004475 7.9e-07 59.7 137 37.2
Potri.005G182500 Populus trichocarpa HOM05D001245 ORTHO05D004475 7.9e-07 59.7 165 29.1
CBR_g37446 Chara braunii HOM05D001245 ORTHO05D004475 1.0e-06 59.3 92 35.9
Dinv14685 Davidia involucrata HOM05D001245 ORTHO05D004475 1.0e-06 59.3 167 25.1
SEGI_34477 Sequoiadendron giganteum HOM05D001245 ORTHO05D004475 1.4e-06 58.9 92 34.8
TWI34G1866 Tripterygium wilfordii HOM05D001245 ORTHO05D004475 1.4e-06 58.9 93 36.6
Zm00001eb091010 Zea mays HOM05D001245 ORTHO05D004475 1.8e-06 58.5 92 39.1
BolC6t40166H Brassica oleracea HOM05D001245 ORTHO05D004475 5.1e-06 57.0 92 38.0
SHI28016 Sapria himalayana HOM05D005024 ORTHO05D006396 5.1e-06 57.0 35 65.7
A07p42860 Brassica napus HOM05D001245 ORTHO05D004475 6.7e-06 56.6 92 38.0
BraA07t31807Z Brassica rapa HOM05D001245 ORTHO05D004475 6.7e-06 56.6 92 38.0


User provided reference genes

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