Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 4.9e-293 1010.4 501 100.0
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 3.4e-225 785.0 398 98.0
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 5.6e-188 661.4 433 73.2
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 5.6e-188 661.4 433 73.2
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 1.2e-185 653.7 433 73.4
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 2.0e-185 652.9 435 72.2
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 2.6e-185 652.5 429 74.6
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 7.6e-185 651.0 423 73.0
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 1.7e-184 649.8 433 73.2
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 2.2e-184 649.4 433 72.3
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 3.8e-184 648.7 433 73.2
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 9.2e-183 644.0 428 71.5
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 9.2e-183 644.0 424 71.7
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 3.5e-182 642.1 431 71.9
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 4.6e-182 641.7 423 72.6
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 6.0e-182 641.3 426 71.6
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 7.8e-182 641.0 435 72.2
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 1.0e-181 640.6 432 69.9
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 1.7e-181 639.8 430 72.8
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 3.0e-181 639.0 423 71.6
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 3.0e-181 639.0 428 72.0
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 8.7e-181 637.5 427 71.7
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 1.1e-180 637.1 432 69.9
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 7.3e-180 634.4 430 71.6
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 7.3e-180 634.4 512 63.3
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 4.7e-179 631.7 432 69.7
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 6.2e-179 631.3 421 71.0
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 8.1e-179 630.9 431 69.4
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 1.4e-178 630.2 423 71.4
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.8e-178 629.8 419 71.6
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 1.8e-178 629.8 433 69.7
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 2.4e-178 629.4 423 69.7
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 2.4e-178 629.4 415 72.5
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 9.0e-178 627.5 419 71.4
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 1.5e-177 626.7 427 70.0
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.5e-177 626.7 425 69.9
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 2.0e-177 626.3 428 71.3
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 2.0e-177 626.3 428 71.3
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 2.6e-177 625.9 419 71.6
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 4.4e-177 625.2 428 71.3
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 7.6e-177 624.4 468 66.5
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 9.9e-177 624.0 430 68.6
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 6.4e-176 621.3 419 70.6
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 6.4e-176 621.3 440 68.6
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 8.4e-176 620.9 431 70.5
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 5.4e-175 618.2 433 69.5
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 9.3e-175 617.5 432 69.2
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 1.6e-174 616.7 430 68.1
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 1.6e-174 616.7 422 69.4
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 2.7e-174 615.9 421 68.6
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 3.5e-174 615.5 429 69.2
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 3.5e-174 615.5 419 69.0
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 4.6e-174 615.1 425 68.2
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 6.0e-174 614.8 435 68.5
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 6.0e-174 614.8 427 69.6
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 7.8e-174 614.4 433 67.2
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 1.0e-173 614.0 429 68.1
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 1.7e-173 613.2 425 67.8
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 2.3e-173 612.8 425 68.0
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 2.3e-173 612.8 430 68.4
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 6.6e-173 611.3 439 67.9
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 1.5e-172 610.1 431 69.1
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 1.9e-172 609.8 423 69.3
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 3.3e-172 609.0 427 68.1
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 5.6e-172 608.2 429 68.1
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 1.3e-171 607.1 423 68.8
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 1.3e-171 607.1 438 68.0
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 1.8e-170 603.2 445 66.7
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 1.8e-170 603.2 429 68.3
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 2.4e-170 602.8 436 66.7
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 6.9e-170 601.3 479 62.8
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 6.9e-170 601.3 434 68.7
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 3.2e-167 592.4 464 64.0
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 1.2e-166 590.5 423 68.6
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 2.1e-166 589.7 438 67.1
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 4.6e-166 588.6 395 72.7
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 2.5e-164 582.8 445 65.8
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 2.5e-164 582.8 425 67.8
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 1.3e-160 570.5 396 71.0
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 2.5e-159 566.2 453 61.1
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 7.1e-159 564.7 419 66.3
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 8.7e-157 557.8 374 69.5
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 1.4e-154 550.4 420 63.6
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 4.0e-154 548.9 440 63.9
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 3.9e-149 532.3 436 60.1
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 2.5e-148 529.6 402 64.9
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 9.7e-148 527.7 414 63.8
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 1.1e-146 524.2 426 61.7
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 1.2e-145 520.8 445 60.2
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 7.7e-145 518.1 405 64.7
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 7.7e-145 518.1 390 62.8
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 1.9e-143 513.5 340 73.2
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 3.0e-141 506.1 414 63.3
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 1.2e-134 484.2 369 63.4
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 2.7e-134 483.0 427 56.0
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 2.7e-134 483.0 429 54.8
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 3.9e-133 479.2 334 70.1
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 6.3e-131 471.9 446 56.3
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 1.4e-130 470.7 333 68.8
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 1.4e-130 470.7 320 69.7
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 3.1e-130 469.5 332 68.4
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 6.5e-128 461.8 409 56.5
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 1.4e-127 460.7 411 55.0
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 1.4e-127 460.7 344 66.3
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 7.4e-124 448.4 351 61.8
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 9.7e-124 448.0 342 64.9
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 2.4e-122 443.4 312 70.5
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 1.4e-114 417.5 401 53.4
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.3e-112 411.0 327 62.7
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 3.0e-109 399.8 427 51.8
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 1.8e-106 390.6 416 53.6
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 2.9e-104 383.3 574 38.0
Migut.H02297 Erythranthe guttata HOM05D004598 ORTHO05D005550 6.6e-104 382.1 270 67.0
C08p43090 Brassica napus HOM05D004598 ORTHO05D005550 6.8e-101 372.1 278 65.1
ECA240G3480 Erigeron canadensis HOM05D004598 ORTHO05D005550 3.4e-100 369.8 209 83.7
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 1.9e-95 354.0 370 52.7
unitig_736.g22586 Utricularia gibba HOM05D004598 ORTHO05D005550 1.6e-94 350.9 270 60.7
Manes.07G140750 Manihot esculenta HOM05D004598 ORTHO05D005550 2.3e-93 347.1 279 63.8
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 4.0e-93 346.3 371 52.3
CSS0036727 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 5.8e-92 342.4 249 67.5
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 9.8e-84 315.1 343 50.7
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.9e-82 310.8 428 40.7
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 4.6e-81 306.2 416 41.8
Thhalv10015361m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 1.5e-79 301.2 234 64.5
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 1.2e-78 298.1 398 43.0
Nn2g12459 Nelumbo nucifera HOM05D004598 ORTHO05D005550 3.4e-68 263.5 149 81.9
Zm00001eb096280 Zea mays HOM05D004598 ORTHO05D005550 2.2e-67 260.8 218 57.3
CSS0012948 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 8.4e-67 258.8 182 71.4
MD10G1130600 Malus domestica HOM05D004598 ORTHO05D005550 8.4e-67 258.8 235 54.0
Cre14.g616200 Chlamydomonas reinhardtii HOM05D004598 ORTHO05D005550 7.8e-65 252.3 469 34.5
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 3.3e-63 246.9 355 42.0
Psat6g012400 Pisum sativum HOM05D004598 ORTHO05D005550 6.2e-62 242.7 168 68.5
BNapus_Darmor_BZH_scaffold_38p00840 Brassica napus HOM05D004598 ORTHO05D005550 6.4e-59 232.6 148 72.3
FAN24G1674 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.4e-58 231.5 148 72.3
MCO01G023 Micromonas commoda HOM05D004598 ORTHO05D005550 1.4e-58 231.5 434 35.7
TAR160G0002 Trochodendron aralioides HOM05D004598 ORTHO05D005550 1.5e-55 221.5 177 62.1
Cfa027243 Carpinus fangiana HOM05D004598 ORTHO05D005550 2.1e-54 217.6 398 35.7
MD10G1130700 Malus domestica HOM05D004598 ORTHO05D005550 1.2e-52 211.8 142 69.0
vmacro01928 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.3e-51 208.4 144 71.5
Dinv26897 Davidia involucrata HOM05D004598 ORTHO05D005550 8.4e-51 205.7 149 70.5
BolC9t58552H Brassica oleracea HOM05D004598 ORTHO05D005550 1.1e-50 205.3 252 48.0
Lj2E933T1 Lonicera japonica HOM05D004598 ORTHO05D005550 9.0e-45 185.7 111 76.6
BcaB01g04740 Brassica carinata HOM05D004598 ORTHO05D005550 2.5e-31 141.0 129 62.0
vmacro22736 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.2e-30 137.9 94 69.1
vmacro20475 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 3.7e-30 137.1 103 64.1
PRCOL_00005536 Prasinoderma coloniale HOM05D004598 ORTHO05D005550 1.9e-26 124.8 431 26.5
MELO3C010621.2 Cucumis melo HOM05D004598 ORTHO05D005550 2.1e-25 121.3 107 52.3
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 1.8e-21 108.2 62 80.6
SHI44717 Sapria himalayana HOM05D004598 ORTHO05D005550 5.7e-15 86.7 117 46.2
CAN.G890.17 Capsicum annuum HOM05D004598 ORTHO05D005550 2.2e-14 84.7 59 64.4
SHI43372 Sapria himalayana HOM05D004598 ORTHO05D005550 1.4e-13 82.0 324 24.4
SHI39035 Sapria himalayana HOM05D004598 ORTHO05D005550 5.0e-11 73.6 63 54.0
SHI47796 Sapria himalayana HOM05D004598 ORTHO05D005550 4.2e-10 70.5 55 56.4
Medtr6g051670 Medicago truncatula HOM05D004598 ORTHO05D005550 1.2e-09 68.9 43 62.8
SHI53813 Sapria himalayana HOM05D004598 ORTHO05D005550 1.4e-08 65.5 52 53.8
SHI39037 Sapria himalayana HOM05D004598 ORTHO05D005550 1.8e-08 65.1 52 53.8
SHI53927 Sapria himalayana HOM05D004598 ORTHO05D005550 1.8e-08 65.1 52 53.8


User provided reference genes

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