Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0066651 Helianthus annuus HOM05D005686 ORTHO05D006798 1.1e-159 566.6 282 100.0
Lsat_1_v5_gn_7_57081 Lactuca sativa HOM05D005686 ORTHO05D006798 1.5e-92 343.6 205 83.4
ECA240G1888 Erigeron canadensis HOM05D005686 ORTHO05D006798 3.6e-91 339.0 205 82.4
HanXRQChr09g0245301 Helianthus annuus HOM05D005686 ORTHO05D006798 8.0e-83 311.2 205 77.6
Nitab4.5_0004788g0010 Nicotiana tabacum HOM05D005686 ORTHO05D006798 8.6e-77 291.2 205 69.3
Nitab4.5_0000019g0070 Nicotiana tabacum HOM05D005686 ORTHO05D006798 7.2e-76 288.1 246 60.6
CSS0031712 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 4.4e-73 278.9 189 72.5
CSS0027001 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 5.7e-73 278.5 189 72.5
Hma1.2p1_0391F.1_g142870 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 4.9e-72 275.4 194 69.6
GSVIVG01034255001 Vitis vinifera HOM05D005686 ORTHO05D006798 4.9e-72 275.4 193 67.9
Cc06_g23520 Coffea canephora HOM05D005686 ORTHO05D006798 6.4e-72 275.0 206 65.5
ClCG03G011610 Citrullus lanatus HOM05D005686 ORTHO05D006798 1.8e-71 273.5 214 65.0
PSO063G6522 Papaver somniferum HOM05D005686 ORTHO05D006798 3.2e-71 272.7 189 70.9
Sc23g0005700 Simmondsia chinensis HOM05D005686 ORTHO05D006798 3.2e-71 272.7 192 69.3
Migut.J00862 Erythranthe guttata HOM05D005686 ORTHO05D006798 4.6e-70 268.9 188 70.2
PSO170G1777 Papaver somniferum HOM05D005686 ORTHO05D006798 4.6e-70 268.9 188 70.2
Peaxi162Scf00322g00914 Petunia axillaris HOM05D005686 ORTHO05D006798 4.6e-70 268.9 218 64.2
Cpa.g.sc46.112 Carica papaya HOM05D005686 ORTHO05D006798 5.9e-70 268.5 187 67.9
Oeu000268.1 Olea europaea HOM05D005686 ORTHO05D006798 7.8e-70 268.1 201 64.7
Sed0010250 Sechium edule HOM05D005686 ORTHO05D006798 7.8e-70 268.1 198 65.7
TAR383G0056 Trochodendron aralioides HOM05D005686 ORTHO05D006798 7.8e-70 268.1 195 68.7
Atru.chr7.1021 Acer truncatum HOM05D005686 ORTHO05D006798 1.7e-69 266.9 195 64.6
PGR142G1985 Punica granatum HOM05D005686 ORTHO05D006798 2.9e-69 266.2 198 66.2
EL10Ac2g03596 Beta vulgaris HOM05D005686 ORTHO05D006798 3.9e-69 265.8 188 68.6
Thecc.09G202000 Theobroma cacao HOM05D005686 ORTHO05D006798 3.9e-69 265.8 198 66.7
CiPaw.08G000400 Carya illinoinensis HOM05D005686 ORTHO05D006798 6.6e-69 265.0 187 68.4
MD04G1000800 Malus domestica HOM05D005686 ORTHO05D006798 6.6e-69 265.0 190 65.3
MSTRG.5975 Avicennia marina HOM05D005686 ORTHO05D006798 2.5e-68 263.1 200 65.0
Cfa012874 Carpinus fangiana HOM05D005686 ORTHO05D006798 2.5e-68 263.1 187 67.4
vmacro20730 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 3.3e-68 262.7 247 55.1
CANSAT80G2136 Cannabis sativa HOM05D005686 ORTHO05D006798 4.3e-68 262.3 207 60.4
AUR62020755 Chenopodium quinoa HOM05D005686 ORTHO05D006798 1.2e-67 260.8 188 66.5
Glyma.08G359900 Glycine max HOM05D005686 ORTHO05D006798 1.2e-67 260.8 187 64.2
DCAR_014582 Daucus carota HOM05D005686 ORTHO05D006798 1.6e-67 260.4 196 67.3
Manes.18G145300 Manihot esculenta HOM05D005686 ORTHO05D006798 1.6e-67 260.4 187 66.8
Gohir.A08G016700 Gossypium hirsutum HOM05D005686 ORTHO05D006798 2.1e-67 260.0 188 67.6
FvH4_4g00120 Fragaria vesca HOM05D005686 ORTHO05D006798 2.8e-67 259.6 197 62.9
FAN17G2251 Fragaria x ananassa HOM05D005686 ORTHO05D006798 3.6e-67 259.2 206 60.7
COL.COLO4_09003 Corchorus olitorius HOM05D005686 ORTHO05D006798 4.7e-67 258.8 200 66.0
Ciclev10009500m.g Citrus clementina HOM05D005686 ORTHO05D006798 8.0e-67 258.1 206 62.1
FAN22G1914 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.8e-66 256.9 206 60.7
Glyma.01G001000 Glycine max HOM05D005686 ORTHO05D006798 2.3e-66 256.5 196 62.8
TWI32G0912 Tripterygium wilfordii HOM05D005686 ORTHO05D006798 2.3e-66 256.5 193 64.8
RcHm_v2.0_Chr4g0384721 Rosa chinensis HOM05D005686 ORTHO05D006798 4.0e-66 255.8 205 60.0
unitig_699.g19254 Utricularia gibba HOM05D005686 ORTHO05D006798 5.2e-66 255.4 191 64.9
Gorai.004G024000 Gossypium raimondii HOM05D005686 ORTHO05D006798 6.8e-66 255.0 186 67.2
Potri.006G080900 Populus trichocarpa HOM05D005686 ORTHO05D006798 2.0e-65 253.4 208 62.5
Eucgr.C02152 Eucalyptus grandis HOM05D005686 ORTHO05D006798 2.6e-65 253.1 206 61.2
Ca_25642_v3 Cicer arietinum L. HOM05D005686 ORTHO05D006798 3.4e-65 252.7 187 64.2
AUR62027958 Chenopodium quinoa HOM05D005686 ORTHO05D006798 5.8e-65 251.9 188 64.9
Gohir.D08G027100 Gossypium hirsutum HOM05D005686 ORTHO05D006798 5.8e-65 251.9 186 66.1
SGA_v2.0_scaffold21G09585 Striga asiatica HOM05D005686 ORTHO05D006798 1.7e-64 250.4 213 59.6
Lj2g0013423 Lotus japonicus HOM05D005686 ORTHO05D006798 1.4e-63 247.3 187 65.2
ATR0626G256 Amborella trichopoda HOM05D005686 ORTHO05D006798 2.4e-63 246.5 200 62.0
Aqoxy7G02566 Aquilegia oxysepala HOM05D005686 ORTHO05D006798 2.4e-63 246.5 195 62.6
CARHR271940 Cardamine hirsuta HOM05D005686 ORTHO05D006798 4.1e-63 245.7 195 63.1
QL11p005743 Quercus lobata HOM05D005686 ORTHO05D006798 1.2e-62 244.2 246 53.7
BraA03t10552Z Brassica rapa HOM05D005686 ORTHO05D006798 2.0e-62 243.4 192 66.1
Sp6g19800 Schrenkiella parvula HOM05D005686 ORTHO05D006798 3.5e-62 242.7 195 64.1
AL8G34220 Arabidopsis lyrata HOM05D005686 ORTHO05D006798 6.0e-62 241.9 195 63.6
arahy.Tifrunner.gnm1.ann1.G6JDG7 Arachis hypogaea HOM05D005686 ORTHO05D006798 6.0e-62 241.9 193 63.7
arahy.Tifrunner.gnm1.ann1.1A52WD Arachis hypogaea HOM05D005686 ORTHO05D006798 7.8e-62 241.5 193 63.7
BcaB08g36164 Brassica carinata HOM05D005686 ORTHO05D006798 1.0e-61 241.1 192 65.1
A10p16070 Brassica napus HOM05D005686 ORTHO05D006798 1.0e-61 241.1 192 65.1
BraA10t43622Z Brassica rapa HOM05D005686 ORTHO05D006798 1.0e-61 241.1 192 65.1
A03p12400 Brassica napus HOM05D005686 ORTHO05D006798 1.3e-61 240.7 192 64.6
Thhalv10014732m.g Eutrema salsugineum HOM05D005686 ORTHO05D006798 1.3e-61 240.7 199 63.8
Potri.018G151500 Populus trichocarpa HOM05D005686 ORTHO05D006798 1.3e-61 240.7 186 64.0
AT5G58110 Arabidopsis thaliana HOM05D005686 ORTHO05D006798 2.3e-61 240.0 198 63.6
BcaB01g04476 Brassica carinata HOM05D005686 ORTHO05D006798 5.0e-61 238.8 195 63.1
BcaC04g19906 Brassica carinata HOM05D005686 ORTHO05D006798 5.0e-61 238.8 192 64.6
BolC9t57855H Brassica oleracea HOM05D005686 ORTHO05D006798 5.0e-61 238.8 192 64.6
Carub.0008s1867 Capsella rubella HOM05D005686 ORTHO05D006798 5.0e-61 238.8 198 63.1
C09p50020 Brassica napus HOM05D005686 ORTHO05D006798 6.6e-61 238.4 186 66.1
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 8.6e-61 238.0 188 64.4
C03p14560 Brassica napus HOM05D005686 ORTHO05D006798 1.9e-60 236.9 193 64.8
Lalb_Chr24g0401731 Lupinus albus HOM05D005686 ORTHO05D006798 1.9e-60 236.9 200 57.0
MELO3C010013.2 Cucumis melo HOM05D005686 ORTHO05D006798 3.3e-60 236.1 278 48.6
THA.LOC104811843 Tarenaya hassleriana HOM05D005686 ORTHO05D006798 3.3e-60 236.1 197 62.4
vmacro20894 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 3.3e-60 236.1 305 44.6
BolC3t13898H Brassica oleracea HOM05D005686 ORTHO05D006798 7.3e-60 235.0 192 63.0
CDE04G0009 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 3.6e-59 232.6 196 60.2
Psat1g052000 Pisum sativum HOM05D005686 ORTHO05D006798 4.7e-59 232.3 192 60.4
HPP92_017040 Vanilla planifolia HOM05D005686 ORTHO05D006798 4.7e-59 232.3 196 61.2
Os06g0703800 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 8.1e-59 231.5 193 60.1
Oeu018307.1 Olea europaea HOM05D005686 ORTHO05D006798 3.1e-58 229.6 205 58.5
Zm00001eb232010 Zea mays HOM05D005686 ORTHO05D006798 2.6e-57 226.5 193 59.1
Oeu000956.1 Olea europaea HOM05D005686 ORTHO05D006798 9.8e-57 224.6 203 57.6
CsaV3_1G044180 Cucumis sativus L. HOM05D005686 ORTHO05D006798 2.9e-56 223.0 152 71.1
Os02g0139100 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 4.9e-56 222.2 195 59.0
BcaB01g04553 Brassica carinata HOM05D005686 ORTHO05D006798 1.4e-55 220.7 197 59.4
CAN.G357.2 Capsicum annuum HOM05D005686 ORTHO05D006798 5.4e-55 218.8 142 73.2
Dinv26497 Davidia involucrata HOM05D005686 ORTHO05D006798 1.6e-54 217.2 164 65.9
Rhsim01G0102500 Rhododendron simsii HOM05D005686 ORTHO05D006798 1.3e-53 214.2 341 40.2
unitig_899.g15184 Utricularia gibba HOM05D000036 ORTHO05D000095 2.3e-53 213.4 181 59.1
Medtr6g093220 Medicago truncatula HOM05D005686 ORTHO05D006798 3.9e-53 212.6 187 56.7
Duzib170G0214 Durio zibethinus HOM05D005686 ORTHO05D006798 1.9e-52 210.3 196 55.6
FAN12G3064 Fragaria x ananassa HOM05D005686 ORTHO05D006798 5.6e-52 208.8 153 63.4
Prupe.1G000800 Prunus persica HOM05D005686 ORTHO05D006798 6.8e-50 201.8 236 46.2
TPR.G21341 Trifolium pratense HOM05D005686 ORTHO05D006798 2.9e-48 196.4 187 53.5
Gorai.009G341500 Gossypium raimondii HOM05D005686 ORTHO05D006798 1.5e-44 184.1 152 60.5
Hma1.2p1_0394F.1_g143240 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 9.6e-44 181.4 123 70.7
Gohir.D05G318500 Gossypium hirsutum HOM05D005686 ORTHO05D006798 1.6e-43 180.6 146 61.6
Mapoly0062s0098 Marchantia polymorpha HOM05D005686 ORTHO05D006798 2.8e-43 179.9 189 51.3
MBI13_g46510_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 6.2e-43 178.7 123 70.7
Pp3c16_2550 Physcomitrium patens HOM05D005686 ORTHO05D006798 4.4e-41 172.6 205 48.3
Pp3c5_4250 Physcomitrium patens HOM05D005686 ORTHO05D006798 7.6e-41 171.8 197 47.2
SMO164G0027 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 1.1e-39 167.9 188 47.9
Actinidia07538 Actinidia chinensis HOM05D005686 ORTHO05D006798 2.7e-38 163.3 109 71.6
Hund19347 Selenicereus undatus HOM05D005686 ORTHO05D006798 5.1e-37 159.1 188 47.9
SEGI_10084 Sequoiadendron giganteum HOM05D005686 ORTHO05D006798 9.6e-36 154.8 146 55.5
Nn8g41269 Nelumbo nucifera HOM05D005686 ORTHO05D006798 8.1e-35 151.8 109 68.8
Oeu021239.2 Olea europaea HOM05D005686 ORTHO05D006798 4.2e-31 139.4 205 41.5
Lju50E1T0 Lonicera japonica HOM05D005686 ORTHO05D006798 3.9e-29 132.9 97 61.9
VMungo0464G1575 Vigna mungo HOM05D005686 ORTHO05D006798 8.7e-29 131.7 239 36.8
Haze_21245 Corylus avellana HOM05D005686 ORTHO05D006798 9.6e-28 128.3 108 58.3
CDE07G1048 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 8.1e-27 125.2 121 56.2
MBI13_g08742_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 4.9e-24 115.9 136 50.0
SalBow6G6154 Salvia bowleyana HOM05D005686 ORTHO05D006798 1.3e-19 101.3 74 64.9
ClCG04G012860 Citrullus lanatus HOM05D005686 ORTHO05D006798 2.8e-19 100.1 87 58.6
SMO146G0036 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 1.8e-18 97.4 147 38.1
MBI13_g33582_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 2.4e-18 97.1 75 61.3
FAN25G3234 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.1e-14 84.0 89 44.9
MCO14G409 Micromonas commoda HOM05D005686 ORTHO05D006798 3.5e-14 83.2 146 36.3
Cre07.g321850 Chlamydomonas reinhardtii HOM05D005686 ORTHO05D006798 6.0e-14 82.4 188 31.4
FAN26G0690 Fragaria x ananassa HOM05D005686 ORTHO05D006798 6.0e-14 82.4 89 46.1
FvH4_1g23212 Fragaria vesca HOM05D005686 ORTHO05D006798 1.3e-13 81.3 90 44.4
FAN17G2013 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.8e-13 80.9 89 44.9
arahy.Tifrunner.gnm1.ann1.U8PUWG Arachis hypogaea HOM05D005611 ORTHO05D006852 9.6e-12 75.1 56 71.4
FvH4_7g03690 Fragaria vesca HOM05D005686 ORTHO05D006798 2.1e-11 73.9 54 63.0
arahy.Tifrunner.gnm1.ann1.11LFFZ Arachis hypogaea HOM05D005686 ORTHO05D006798 4.8e-11 72.8 57 66.7
FAN07G2653 Fragaria x ananassa HOM05D005686 ORTHO05D006798 5.3e-10 69.3 52 59.6
FAN23G2196 Fragaria x ananassa HOM05D005686 ORTHO05D006798 5.9e-09 65.9 49 63.3
FAN01G2054 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.2e-08 63.9 86 43.0
BcaC07g37307 Brassica carinata HOM05D005686 ORTHO05D006798 1.1e-07 61.6 54 61.1
C08p07420 Brassica napus HOM05D005686 ORTHO05D006798 1.1e-07 61.6 54 61.1
BolC8t47587H Brassica oleracea HOM05D005686 ORTHO05D006798 1.1e-07 61.6 54 61.1


User provided reference genes

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