Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0066581 Helianthus annuus HOM05D003357 ORTHO05D003779 1.9e-63 245.7 128 100.0
Lsat_1_v5_gn_9_116201 Lactuca sativa HOM05D003357 ORTHO05D003779 1.5e-52 209.5 128 81.2
HanXRQChr10g0300241 Helianthus annuus HOM05D003357 ORTHO05D003779 5.5e-47 191.0 128 73.4
ECA234G2199 Erigeron canadensis HOM05D003357 ORTHO05D003779 2.7e-46 188.7 128 71.9
Lsat_1_v5_gn_7_78341 Lactuca sativa HOM05D003357 ORTHO05D003779 4.6e-46 188.0 128 71.9
Lsat_1_v5_gn_5_107641 Lactuca sativa HOM05D003357 ORTHO05D003779 1.3e-45 186.4 128 71.1
HanXRQChr11g0337561 Helianthus annuus HOM05D003357 ORTHO05D003779 2.3e-45 185.7 128 70.3
Nitab4.5_0003615g0040 Nicotiana tabacum HOM05D003357 ORTHO05D003779 3.9e-45 184.9 128 69.5
Hma1.2p1_0704F.1_g206850 Hydrangea macrophylla HOM05D003357 ORTHO05D003779 5.1e-45 184.5 128 71.1
CSS0046968 Camellia sinensis var. sinensis HOM05D003357 ORTHO05D003779 6.7e-45 184.1 128 71.9
HanXRQChr16g0514191 Helianthus annuus HOM05D003357 ORTHO05D003779 8.7e-45 183.7 128 69.5
Nitab4.5_0003071g0080 Nicotiana tabacum HOM05D003357 ORTHO05D003779 1.1e-44 183.3 128 71.1
Dinv19344 Davidia involucrata HOM05D003357 ORTHO05D003779 1.5e-44 183.0 128 69.5
Actinidia39063 Actinidia chinensis HOM05D003357 ORTHO05D003779 3.3e-44 181.8 128 71.1
Nitab4.5_0009907g0030 Nicotiana tabacum HOM05D003357 ORTHO05D003779 4.3e-44 181.4 128 70.3
CAN.G1352.13 Capsicum annuum HOM05D003357 ORTHO05D003779 9.7e-44 180.3 128 69.5
Lj9A312T45 Lonicera japonica HOM05D003357 ORTHO05D003779 9.7e-44 180.3 128 70.3
Dinv24254 Davidia involucrata HOM05D003357 ORTHO05D003779 1.3e-43 179.9 128 68.8
unitig_26.g9557 Utricularia gibba HOM05D003357 ORTHO05D003779 2.2e-43 179.1 128 65.6
Gohir.D02G232200 Gossypium hirsutum HOM05D003357 ORTHO05D003779 3.7e-43 178.3 128 68.0
Gorai.005G260000 Gossypium raimondii HOM05D003357 ORTHO05D003779 3.7e-43 178.3 128 68.0
Ciclev10002130m.g Citrus clementina HOM05D003357 ORTHO05D003779 4.8e-43 177.9 128 68.0
Peaxi162Scf00011g00031 Petunia axillaris HOM05D003357 ORTHO05D003779 4.8e-43 177.9 128 68.0
Duzib248G1129 Durio zibethinus HOM05D003357 ORTHO05D003779 6.3e-43 177.6 128 68.8
Solyc01g104580.3 Solanum lycopersicum HOM05D003357 ORTHO05D003779 8.2e-43 177.2 128 68.8
Sopen01g047090 Solanum pennellii HOM05D003357 ORTHO05D003779 8.2e-43 177.2 128 68.8
PGSC0003DMG400029777 Solanum tuberosum HOM05D003357 ORTHO05D003779 8.2e-43 177.2 128 68.8
TAR197G0001 Trochodendron aralioides HOM05D003357 ORTHO05D003779 8.2e-43 177.2 128 68.0
ECA236G2437 Erigeron canadensis HOM05D003357 ORTHO05D003779 1.1e-42 176.8 128 67.2
Peaxi162Scf00003g03752 Petunia axillaris HOM05D003357 ORTHO05D003779 1.4e-42 176.4 125 68.0
Thecc.02G042200 Theobroma cacao HOM05D003357 ORTHO05D003779 1.4e-42 176.4 128 68.0
Atru.chr6.1007 Acer truncatum HOM05D003357 ORTHO05D003779 1.8e-42 176.0 128 65.6
Gohir.A03G210600 Gossypium hirsutum HOM05D003357 ORTHO05D003779 1.8e-42 176.0 128 66.4
Cfa005555 Carpinus fangiana HOM05D003357 ORTHO05D003779 2.4e-42 175.6 128 68.8
Migut.N01027 Erythranthe guttata HOM05D003357 ORTHO05D003779 3.1e-42 175.3 128 66.4
unitig_749.g13510 Utricularia gibba HOM05D000349 ORTHO05D003779 3.1e-42 175.3 128 64.1
Nitab4.5_0000078g0390 Nicotiana tabacum HOM05D003357 ORTHO05D003779 4.1e-42 174.9 140 63.6
CiPaw.06G149700 Carya illinoinensis HOM05D003357 ORTHO05D003779 5.3e-42 174.5 128 68.8
Gohir.A01G001200 Gossypium hirsutum HOM05D003357 ORTHO05D003779 5.3e-42 174.5 128 66.4
Gohir.D01G000900 Gossypium hirsutum HOM05D003357 ORTHO05D003779 5.3e-42 174.5 128 66.4
Gorai.002G001400 Gossypium raimondii HOM05D003357 ORTHO05D003779 5.3e-42 174.5 128 66.4
TWI23G0276 Tripterygium wilfordii HOM05D003357 ORTHO05D003779 9.0e-42 173.7 128 68.0
CiPaw.05G042100 Carya illinoinensis HOM05D003357 ORTHO05D003779 1.2e-41 173.3 128 67.2
SalBow5G0183 Salvia bowleyana HOM05D003357 ORTHO05D003779 1.2e-41 173.3 128 66.4
Potri.003G021934 Populus trichocarpa HOM05D003357 ORTHO05D003779 2.0e-41 172.6 128 66.4
MSTRG.16542 Avicennia marina HOM05D003357 ORTHO05D003779 2.6e-41 172.2 128 64.1
SGA_v2.0_scaffold1G00338 Striga asiatica HOM05D003357 ORTHO05D003779 2.6e-41 172.2 137 65.0
Duzib052G0578 Durio zibethinus HOM05D003357 ORTHO05D003779 3.4e-41 171.8 128 68.0
Sc02g0001800 Simmondsia chinensis HOM05D003357 ORTHO05D003779 4.5e-41 171.4 127 68.5
QL11p019146 Quercus lobata HOM05D003357 ORTHO05D003779 7.7e-41 170.6 127 66.9
THA.LOC104805045 Tarenaya hassleriana HOM05D003357 ORTHO05D003779 7.7e-41 170.6 128 65.6
FvH4_5g29780 Fragaria vesca HOM05D003357 ORTHO05D003779 1.0e-40 170.2 128 65.6
FAN08G0651 Fragaria x ananassa HOM05D003357 ORTHO05D003779 1.0e-40 170.2 128 65.6
FAN18G4337 Fragaria x ananassa HOM05D003357 ORTHO05D003779 1.0e-40 170.2 128 65.6
Cpa.g.sc2.31 Carica papaya HOM05D003357 ORTHO05D003779 1.3e-40 169.9 128 64.8
MELO3C012699.2 Cucumis melo HOM05D003357 ORTHO05D003779 1.7e-40 169.5 128 64.1
CsaV3_7G022210 Cucumis sativus L. HOM05D003357 ORTHO05D003779 1.7e-40 169.5 128 64.1
Migut.B00658 Erythranthe guttata HOM05D003357 ORTHO05D003779 1.7e-40 169.5 128 63.3
Ca_29933_v3 Cicer arietinum L. HOM05D003357 ORTHO05D003779 2.2e-40 169.1 128 64.8
ClCG05G009890 Citrullus lanatus HOM05D003357 ORTHO05D003779 2.2e-40 169.1 128 63.3
CsaV3_3G018700 Cucumis sativus L. HOM05D003357 ORTHO05D003779 2.2e-40 169.1 128 63.3
FAN13G0157 Fragaria x ananassa HOM05D003357 ORTHO05D003779 2.2e-40 169.1 128 65.6
RcHm_v2.0_Chr7g0223311 Rosa chinensis HOM05D003357 ORTHO05D003779 2.2e-40 169.1 128 64.8
ClCG00G003530 Citrullus lanatus HOM05D003357 ORTHO05D003779 2.9e-40 168.7 128 64.1
ClCG09G014530 Citrullus lanatus HOM05D003357 ORTHO05D003779 2.9e-40 168.7 128 64.1
MD08G1227400 Malus domestica HOM05D003357 ORTHO05D003779 2.9e-40 168.7 128 64.8
TWI14G1244 Tripterygium wilfordii HOM05D003357 ORTHO05D003779 2.9e-40 168.7 128 65.6
Thhalv10001009m.g Eutrema salsugineum HOM05D003357 ORTHO05D003779 6.5e-40 167.5 128 64.8
CANSAT11G1252 Cannabis sativa HOM05D003357 ORTHO05D003779 8.5e-40 167.2 128 64.1
DCAR_021821 Daucus carota HOM05D003357 ORTHO05D003779 8.5e-40 167.2 128 64.1
Manes.07G012600 Manihot esculenta HOM05D003357 ORTHO05D003779 8.5e-40 167.2 128 64.8
Psat1g219760 Pisum sativum HOM05D003357 ORTHO05D003779 8.5e-40 167.2 128 64.8
TPR.G19716 Trifolium pratense HOM05D003357 ORTHO05D003779 8.5e-40 167.2 128 64.1
arahy.Tifrunner.gnm1.ann1.11V3F3 Arachis hypogaea HOM05D003357 ORTHO05D003779 1.1e-39 166.8 128 64.1
arahy.Tifrunner.gnm1.ann1.I2CYKQ Arachis hypogaea HOM05D003357 ORTHO05D003779 1.1e-39 166.8 128 64.1
CSS0006159 Camellia sinensis var. sinensis HOM05D003357 ORTHO05D003779 1.1e-39 166.8 106 79.2
Eucgr.I02708 Eucalyptus grandis HOM05D003357 ORTHO05D003779 1.1e-39 166.8 128 64.1
MD15G1419800 Malus domestica HOM05D003357 ORTHO05D003779 1.4e-39 166.4 128 64.1
Prupe.1G564500 Prunus persica HOM05D003357 ORTHO05D003779 1.4e-39 166.4 128 64.1
PSO017G4220 Papaver somniferum HOM05D003357 ORTHO05D003779 2.5e-39 165.6 128 64.1
Sp2g12550 Schrenkiella parvula HOM05D003357 ORTHO05D003779 2.5e-39 165.6 128 64.1
Sed0024772 Sechium edule HOM05D003357 ORTHO05D003779 2.5e-39 165.6 128 63.3
AL5G10030 Arabidopsis lyrata HOM05D003357 ORTHO05D003779 3.2e-39 165.2 128 64.8
Lalb_Chr20g0123351 Lupinus albus HOM05D003357 ORTHO05D003779 3.2e-39 165.2 128 62.5
Sed0004213 Sechium edule HOM05D003357 ORTHO05D003779 4.2e-39 164.9 128 63.3
A02p31650 Brassica napus HOM05D003357 ORTHO05D003779 5.5e-39 164.5 128 63.3
C02p48990 Brassica napus HOM05D003357 ORTHO05D003779 5.5e-39 164.5 128 63.3
BolC2t10993H Brassica oleracea HOM05D003357 ORTHO05D003779 5.5e-39 164.5 128 63.3
BraA02t08168Z Brassica rapa HOM05D003357 ORTHO05D003779 5.5e-39 164.5 128 63.3
Carub.0005s0007 Capsella rubella HOM05D003357 ORTHO05D003779 5.5e-39 164.5 128 64.1
Glyma.08G184000 Glycine max HOM05D003357 ORTHO05D003779 5.5e-39 164.5 128 62.5
AT2G01080 Arabidopsis thaliana HOM05D003357 ORTHO05D003779 7.2e-39 164.1 128 64.1
Glyma.15G048800 Glycine max HOM05D003357 ORTHO05D003779 7.2e-39 164.1 128 62.5
Manes.10G133000 Manihot esculenta HOM05D003357 ORTHO05D003779 7.2e-39 164.1 128 64.1
Potri.001G208000 Populus trichocarpa HOM05D003357 ORTHO05D003779 7.2e-39 164.1 128 64.1
Medtr2g007830 Medicago truncatula HOM05D003357 ORTHO05D003779 9.4e-39 163.7 128 62.5
CARHR143630 Cardamine hirsuta HOM05D003357 ORTHO05D003779 1.2e-38 163.3 128 63.3
HanXRQChr03g0066491 Helianthus annuus HOM05D003357 ORTHO05D003779 1.2e-38 163.3 96 87.5
PGR142G3651 Punica granatum HOM05D003357 ORTHO05D003779 1.2e-38 163.3 128 63.3
Phvul.006G211600 Phaseolus vulgaris HOM05D003357 ORTHO05D003779 1.6e-38 162.9 128 61.7
VMungo0540G1809 Vigna mungo HOM05D003357 ORTHO05D003779 2.1e-38 162.5 128 62.5
Aa31LG2G8800 Aethionema arabicum HOM05D003357 ORTHO05D003779 3.6e-38 161.8 128 61.7
Lj6g0024688 Lotus japonicus HOM05D003357 ORTHO05D003779 3.6e-38 161.8 128 61.7
MBI06_g01047_MAGBIO Magnolia biondii HOM05D003357 ORTHO05D003779 4.6e-38 161.4 128 66.4
BcaC06g34220 Brassica carinata HOM05D003357 ORTHO05D003779 6.1e-38 161.0 128 61.7
A06p44690 Brassica napus HOM05D003357 ORTHO05D003779 6.1e-38 161.0 128 61.7
BolC7t43694H Brassica oleracea HOM05D003357 ORTHO05D003779 6.1e-38 161.0 128 61.7
BraA06t27342Z Brassica rapa HOM05D003357 ORTHO05D003779 6.1e-38 161.0 128 61.7
Aqoxy5G02480 Aquilegia oxysepala HOM05D003357 ORTHO05D003779 8.8e-37 157.1 128 60.9
Cc02_g22170 Coffea canephora HOM05D003357 ORTHO05D003779 1.5e-36 156.4 106 72.6
CDE06G1413 Ceratophyllum demersum HOM05D003357 ORTHO05D003779 3.3e-36 155.2 125 63.2
CDE06G2726 Ceratophyllum demersum HOM05D003357 ORTHO05D003779 3.3e-36 155.2 125 62.4
SGA_v2.0_scaffold110G31275 Striga asiatica HOM05D003357 ORTHO05D003779 9.7e-36 153.7 147 55.1
GSVIVG01029690001 Vitis vinifera HOM05D003357 ORTHO05D003779 1.7e-35 152.9 106 69.8
CSS0044852 Camellia sinensis var. sinensis HOM05D003357 ORTHO05D003779 3.7e-35 151.8 101 75.2
Rhsim11G0132500 Rhododendron simsii HOM05D003357 ORTHO05D003779 1.5e-33 146.4 102 70.6
Os03g0262700 Oryza sativa ssp. japonica HOM05D003357 ORTHO05D003779 3.4e-33 145.2 128 57.8
Zm00001eb011530 Zea mays HOM05D003357 ORTHO05D003779 4.5e-33 144.8 128 57.0
vmacro01792 Vaccinium macrocarpon HOM05D003357 ORTHO05D003779 5.9e-33 144.4 100 70.0
arahy.Tifrunner.gnm1.ann1.S31UIX Arachis hypogaea HOM05D003357 ORTHO05D003779 1.7e-32 142.9 129 56.6
MSTRG.5244 Avicennia marina HOM05D003357 ORTHO05D003779 2.9e-32 142.1 100 68.0
HPP92_011155 Vanilla planifolia HOM05D003357 ORTHO05D003779 2.9e-32 142.1 128 60.2
Oeu041075.1 Olea europaea HOM05D003357 ORTHO05D003779 1.1e-31 140.2 101 67.3
SEGI_11822 Sequoiadendron giganteum HOM05D003357 ORTHO05D003779 1.6e-30 136.3 125 54.4
Lj5C246T11 Lonicera japonica HOM05D003357 ORTHO05D003779 2.1e-30 136.0 100 66.0
ATR0121G007 Amborella trichopoda HOM05D003357 ORTHO05D003779 6.1e-30 134.4 128 56.2
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 7.9e-30 134.0 101 64.4
Haze_01610 Corylus avellana HOM05D003357 ORTHO05D003779 1.4e-29 133.3 101 66.3
Haze_01612 Corylus avellana HOM05D003357 ORTHO05D003779 1.4e-29 133.3 101 66.3
SalBow5G2536 Salvia bowleyana HOM05D003357 ORTHO05D003779 8.8e-29 130.6 99 64.6
MELO3C031692.2 Cucumis melo HOM05D003357 ORTHO05D003779 5.7e-28 127.9 100 60.0
PSO170G2411 Papaver somniferum HOM05D003357 ORTHO05D003779 6.3e-27 124.4 99 60.6
Peaxi162Scf00018g00081 Petunia axillaris HOM05D003357 ORTHO05D003779 6.3e-27 124.4 108 57.4
Ca_00094_v3 Cicer arietinum L. HOM05D003357 ORTHO05D003779 1.1e-26 123.6 100 60.0
Sabra03G0013900 Salix brachista HOM05D003357 ORTHO05D003779 1.4e-26 123.2 99 59.6
Nn5g27960 Nelumbo nucifera HOM05D003357 ORTHO05D003779 1.8e-26 122.9 101 63.4
Manes.12G086500 Manihot esculenta HOM05D003357 ORTHO05D003779 2.0e-25 119.4 101 58.4
HPP92_027206 Vanilla planifolia HOM05D003357 ORTHO05D003779 4.5e-25 118.2 126 52.4
EL10Ac9g22198 Beta vulgaris HOM05D003357 ORTHO05D003779 7.7e-25 117.5 125 52.8
Glyma.08G077900 Glycine max HOM05D003357 ORTHO05D003779 1.3e-24 116.7 119 49.6
Manes.01G111900 Manihot esculenta HOM05D003357 ORTHO05D003779 2.2e-24 115.9 102 55.9
SHI16610 Sapria himalayana HOM05D003357 ORTHO05D003779 2.9e-24 115.5 125 50.4
Manes.10G036100 Manihot esculenta HOM05D003357 ORTHO05D003779 5.0e-24 114.8 101 55.4
Manes.03G085403 Manihot esculenta HOM05D003357 ORTHO05D003779 6.5e-24 114.4 98 57.1
Manes.18G118000 Manihot esculenta HOM05D003357 ORTHO05D003779 4.2e-23 111.7 110 53.6
Manes.03G114750 Manihot esculenta HOM05D003357 ORTHO05D003779 1.6e-22 109.8 98 57.1
Lj6g0024689 Lotus japonicus HOM05D003357 ORTHO05D003779 4.7e-22 108.2 122 49.2
arahy.Tifrunner.gnm1.ann1.GBW8AP Arachis hypogaea HOM05D003357 ORTHO05D003779 3.0e-21 105.5 101 52.5
Zm00001eb398130 Zea mays HOM05D003357 ORTHO05D003779 5.2e-21 104.8 99 52.5
ECA240G3987 Erigeron canadensis HOM05D000003 ORTHO05D000004 3.3e-20 102.1 92 59.8
SEGI_24152 Sequoiadendron giganteum HOM05D003357 ORTHO05D003779 2.8e-19 99.0 123 40.7
Manes.17G088150 Manihot esculenta HOM05D003357 ORTHO05D003779 1.5e-15 86.7 72 56.9
HanXRQChr15g0467891 Helianthus annuus HOM05D003357 ORTHO05D003779 7.2e-15 84.3 79 59.5
Manes.07G113500 Manihot esculenta HOM05D003357 ORTHO05D003779 7.2e-15 84.3 72 55.6
SMO164G0048 Selaginella moellendorffii HOM05D003357 ORTHO05D003779 7.2e-15 84.3 121 38.8
HanXRQChr03g0073191 Helianthus annuus HOM05D003357 ORTHO05D003779 1.4e-13 80.1 60 68.3
AUR62027010 Chenopodium quinoa HOM05D003357 ORTHO05D003779 3.4e-12 75.5 102 44.1
AUR62030850 Chenopodium quinoa HOM05D000445 ORTHO05D000314 3.4e-12 75.5 102 44.1
ATR0317G009 Amborella trichopoda HOM05D003357 ORTHO05D003779 7.5e-12 74.3 106 35.8
MBI13_g01678_MAGBIO Magnolia biondii HOM05D003357 ORTHO05D003779 3.7e-11 72.0 107 35.5
AagrBONN_evm.TU.Sc2ySwM_228.3124 Anthoceros agrestis HOM05D003357 ORTHO05D003779 1.1e-10 70.5 115 31.3
Dinv37830 Davidia involucrata HOM05D003357 ORTHO05D003779 1.2e-09 67.0 119 32.8
Hma1.2p1_0090F.1_g045910 Hydrangea macrophylla HOM05D003357 ORTHO05D003779 2.0e-09 66.2 118 37.3
Manes.04G150000 Manihot esculenta HOM05D003357 ORTHO05D003779 3.5e-09 65.5 107 32.7
MD15G1282800 Malus domestica HOM05D003357 ORTHO05D003779 5.9e-09 64.7 69 46.4
Migut.I01123 Erythranthe guttata HOM05D003357 ORTHO05D003779 1.9e-07 59.7 112 33.9
Pp3c17_19100 Physcomitrium patens HOM05D003357 ORTHO05D003779 5.5e-07 58.2 117 29.9
CiPaw.02G132100 Carya illinoinensis HOM05D003357 ORTHO05D003779 1.2e-06 57.0 116 31.9
Gohir.A05G141100 Gossypium hirsutum HOM05D003357 ORTHO05D003779 3.6e-06 55.5 107 30.8
Sc15g0000760 Simmondsia chinensis HOM05D003357 ORTHO05D003779 4.7e-06 55.1 107 30.8
Gohir.D05G143300 Gossypium hirsutum HOM05D003357 ORTHO05D003779 6.1e-06 54.7 108 32.4


User provided reference genes

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