Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 9.8e-282 973.0 567 100.0
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 1.4e-251 872.8 576 86.3
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 1.5e-168 597.0 581 63.9
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 1.1e-158 564.3 583 55.1
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 3.2e-131 473.0 579 53.9
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 3.7e-127 459.5 580 47.8
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 2.6e-125 453.4 565 47.4
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 6.5e-124 448.7 561 46.9
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 6.5e-124 448.7 557 47.0
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 2.5e-123 446.8 557 53.5
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 8.7e-121 438.3 551 47.9
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 5.7e-120 435.6 555 49.7
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 1.6e-119 434.1 564 44.7
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 3.7e-119 433.0 555 47.6
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 5.0e-116 422.5 578 45.7
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 3.0e-113 413.3 542 45.2
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 3.3e-112 409.8 564 44.5
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 3.3e-112 409.8 558 45.5
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 6.3e-111 405.6 572 44.4
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 1.2e-109 401.4 570 42.3
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 2.0e-109 400.6 577 43.7
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 1.0e-108 398.3 570 42.5
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 1.0e-108 398.3 569 40.9
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 1.3e-108 397.9 571 44.3
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 1.3e-108 397.9 555 44.7
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 2.2e-108 397.1 535 43.2
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 2.2e-108 397.1 570 46.1
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.8e-108 396.4 569 44.1
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.1e-107 394.8 547 49.9
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 1.9e-107 394.0 578 42.2
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 2.3e-105 387.1 563 42.5
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 6.7e-105 385.6 572 43.5
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 8.8e-105 385.2 555 44.1
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 3.3e-104 383.3 563 42.8
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.2e-103 380.6 539 44.7
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 1.8e-102 377.5 569 41.7
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 3.1e-102 376.7 564 40.6
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 9.1e-102 375.2 564 40.2
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 9.1e-102 375.2 558 41.4
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 5.9e-101 372.5 571 41.0
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 7.7e-101 372.1 566 42.6
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 2.2e-100 370.5 569 41.7
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 2.2e-100 370.5 567 41.8
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 5.0e-100 369.4 543 41.3
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 5.0e-100 369.4 543 41.3
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 1.1e-99 368.2 581 43.7
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 3.2e-99 366.7 571 40.3
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 4.2e-99 366.3 561 40.5
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 1.6e-98 364.4 533 47.1
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 4.7e-98 362.8 567 39.5
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 7.9e-98 362.1 546 41.8
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 1.0e-97 361.7 551 40.3
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 1.4e-97 361.3 554 45.3
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.8e-97 360.9 567 39.2
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 3.9e-97 359.8 544 40.6
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 5.1e-97 359.4 569 39.5
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 1.5e-96 357.8 564 39.0
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 3.3e-96 356.7 578 38.8
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 1.3e-95 354.8 541 39.2
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 1.3e-95 354.8 539 39.7
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 2.2e-95 354.0 526 40.9
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 1.1e-94 351.7 543 38.9
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 1.1e-94 351.7 577 39.9
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.4e-94 351.3 579 39.2
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 1.4e-94 351.3 569 39.9
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.4e-94 351.3 569 39.9
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 1.4e-94 351.3 572 40.0
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 2.4e-94 350.5 574 39.5
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 2.6e-93 347.1 572 39.9
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 3.5e-93 346.7 642 37.7
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 4.5e-93 346.3 541 38.1
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 1.0e-92 345.1 543 39.0
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 1.0e-92 345.1 574 39.2
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 2.9e-92 343.6 573 39.1
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 5.0e-92 342.8 568 39.6
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 1.5e-91 341.3 572 39.3
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 1.9e-91 340.9 576 37.8
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.2e-91 340.1 569 39.5
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 4.2e-91 339.7 569 38.1
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 5.5e-91 339.3 499 42.1
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 9.4e-91 338.6 568 38.6
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 1.2e-90 338.2 558 39.6
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.1e-90 337.4 571 39.8
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 1.0e-89 335.1 576 38.0
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 4.0e-89 333.2 551 39.4
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 6.7e-89 332.4 568 38.2
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.1e-88 331.6 568 37.5
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 1.5e-88 331.3 552 39.1
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 4.4e-88 329.7 565 38.2
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 4.4e-88 329.7 567 39.9
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 5.7e-88 329.3 564 37.8
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 1.3e-87 328.2 586 42.5
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 3.7e-87 326.6 544 37.5
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 8.2e-87 325.5 544 36.6
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.7e-85 320.5 457 44.9
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 4.5e-85 319.7 567 39.0
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 7.7e-85 318.9 555 35.5
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 2.9e-84 317.0 543 38.1
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 8.5e-84 315.5 585 36.8
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 6.1e-82 309.3 543 36.3
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 1.0e-81 308.5 578 34.6
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 1.8e-81 307.8 534 36.5
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 2.3e-81 307.4 578 34.3
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 1.7e-79 301.2 578 33.7
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 1.7e-79 301.2 578 33.6
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 8.3e-79 298.9 457 46.2
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 1.1e-78 298.5 578 33.4
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 1.4e-78 298.1 563 33.4
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 9.1e-78 295.4 465 41.5
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 2.9e-76 290.4 375 46.1
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 8.5e-76 288.9 541 38.1
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 8.5e-76 288.9 570 34.9
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 7.2e-75 285.8 565 35.2
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 3.0e-73 280.4 364 45.9
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 6.8e-73 279.3 390 41.0
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 4.9e-71 273.1 445 41.3
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 6.3e-71 272.7 428 41.6
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 6.3e-71 272.7 575 33.0
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 1.0e-68 265.4 584 33.9
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 8.6e-68 262.3 535 34.0
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 1.2e-64 251.9 474 36.3
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 4.9e-63 246.5 588 36.9
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 1.8e-62 244.6 239 54.0
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 5.4e-62 243.0 461 36.9
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 1.9e-59 234.6 473 35.5
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.8e-57 228.0 234 50.0
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 1.1e-49 202.2 543 28.9
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.3e-47 195.3 231 45.0
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.2e-45 188.7 327 38.8
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.5e-43 181.8 428 28.7
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 8.4e-39 166.0 233 38.6
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 2.5e-35 154.5 447 29.8
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 4.3e-35 153.7 152 55.3
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 7.3e-35 152.9 249 45.0
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 1.2e-34 152.1 154 53.9
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.6e-34 151.8 156 53.2
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.1e-34 151.4 156 52.6
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.9e-31 140.2 217 41.0
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.3e-28 132.1 373 29.5
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 1.3e-28 132.1 367 28.9
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 2.0e-24 118.2 137 43.1
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.7e-23 115.2 200 42.0
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 2.4e-22 111.3 147 36.7
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 4.2e-22 110.5 125 45.6
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 7.1e-22 109.8 531 25.0
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.0e-20 105.9 117 46.2
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 1.7e-20 105.1 163 38.7
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 4.3e-19 100.5 419 25.3
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 5.6e-19 100.1 546 22.0
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 8.1e-18 96.3 106 45.3
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.5e-16 92.0 122 40.2
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 9.9e-16 89.4 538 22.9
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.3e-15 89.0 213 33.3
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.7e-15 88.6 139 38.8
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 6.4e-15 86.7 105 46.7
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 6.4e-15 86.7 529 19.7
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 2.1e-13 81.6 59 67.8
GSVIVG01038756001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.7e-13 81.3 84 50.0
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 7.9e-13 79.7 575 20.7
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 4.3e-11 73.9 176 30.7
ATR0193G025 Amborella trichopoda HOM05D003578 ORTHO05D004021 9.6e-11 72.8 103 38.8
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.6e-10 72.0 72 50.0
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 8.1e-10 69.7 126 34.1
ATR0686G029 Amborella trichopoda HOM05D003578 ORTHO05D004021 2.4e-09 68.2 103 36.9
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 2.0e-08 65.1 38 73.7
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.6e-08 64.7 164 27.4
Atru.chr6.1018 Acer truncatum HOM05D003578 ORTHO05D004021 4.5e-08 63.9 116 34.5
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 2.2e-07 61.6 290 25.5
Aqoxy2G04053 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.9e-06 58.5 61 50.8
Aqoxy7G03366 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.9e-06 58.5 61 50.8
Nn7g38100 Nelumbo nucifera HOM05D003578 ORTHO05D004021 9.3e-06 56.2 97 36.1


User provided reference genes

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