Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0066491 Helianthus annuus HOM05D003357 ORTHO05D003779 8.2e-78 293.9 176 100.0
Lsat_1_v5_gn_9_116201 Lactuca sativa HOM05D003357 ORTHO05D003779 1.2e-39 167.2 143 61.5
HanXRQChr03g0066581 Helianthus annuus HOM05D003357 ORTHO05D003779 1.3e-38 163.7 96 87.5
Actinidia39063 Actinidia chinensis HOM05D003357 ORTHO05D003779 2.1e-36 156.4 176 51.1
CSS0044852 Camellia sinensis var. sinensis HOM05D003357 ORTHO05D003779 3.5e-36 155.6 141 61.0
Hma1.2p1_0704F.1_g206850 Hydrangea macrophylla HOM05D003357 ORTHO05D003779 6.0e-36 154.8 139 59.7
HanXRQChr10g0300241 Helianthus annuus HOM05D003357 ORTHO05D003779 3.9e-35 152.1 140 56.4
MSTRG.5244 Avicennia marina HOM05D003357 ORTHO05D003779 6.6e-35 151.4 135 58.5
Nitab4.5_0003071g0080 Nicotiana tabacum HOM05D003357 ORTHO05D003779 6.6e-35 151.4 139 58.3
Dinv24254 Davidia involucrata HOM05D003357 ORTHO05D003779 4.3e-34 148.7 137 57.7
Lj9A312T45 Lonicera japonica HOM05D003357 ORTHO05D003779 4.3e-34 148.7 135 58.5
CAN.G1352.13 Capsicum annuum HOM05D003357 ORTHO05D003779 5.6e-34 148.3 137 57.7
Lsat_1_v5_gn_7_78341 Lactuca sativa HOM05D003357 ORTHO05D003779 5.6e-34 148.3 135 57.0
Lj5C246T11 Lonicera japonica HOM05D003357 ORTHO05D003779 7.3e-34 147.9 138 57.2
Nitab4.5_0009907g0030 Nicotiana tabacum HOM05D003357 ORTHO05D003779 9.5e-34 147.5 137 57.7
Nitab4.5_0003615g0040 Nicotiana tabacum HOM05D003357 ORTHO05D003779 1.2e-33 147.1 139 54.7
vmacro01792 Vaccinium macrocarpon HOM05D003357 ORTHO05D003779 1.2e-33 147.1 151 53.0
CSS0046968 Camellia sinensis var. sinensis HOM05D003357 ORTHO05D003779 1.6e-33 146.7 132 58.3
HanXRQChr11g0337561 Helianthus annuus HOM05D003357 ORTHO05D003779 1.6e-33 146.7 132 57.6
Solyc01g104580.3 Solanum lycopersicum HOM05D003357 ORTHO05D003779 1.6e-33 146.7 138 57.2
Sopen01g047090 Solanum pennellii HOM05D003357 ORTHO05D003779 1.6e-33 146.7 138 57.2
PGSC0003DMG400029777 Solanum tuberosum HOM05D003357 ORTHO05D003779 1.6e-33 146.7 138 57.2
Lsat_1_v5_gn_5_107641 Lactuca sativa HOM05D003357 ORTHO05D003779 2.1e-33 146.4 143 52.4
Oeu041075.1 Olea europaea HOM05D003357 ORTHO05D003779 3.6e-33 145.6 134 56.0
Nitab4.5_0000078g0390 Nicotiana tabacum HOM05D003357 ORTHO05D003779 4.7e-33 145.2 140 54.3
TAR197G0001 Trochodendron aralioides HOM05D003357 ORTHO05D003779 4.7e-33 145.2 138 55.8
HanXRQChr16g0514191 Helianthus annuus HOM05D003357 ORTHO05D003779 6.2e-33 144.8 150 52.0
MSTRG.16542 Avicennia marina HOM05D003357 ORTHO05D003779 1.1e-32 144.1 133 58.6
SGA_v2.0_scaffold1G00338 Striga asiatica HOM05D003357 ORTHO05D003779 1.1e-32 144.1 133 57.1
Dinv19344 Davidia involucrata HOM05D003357 ORTHO05D003779 3.1e-32 142.5 141 53.9
THA.LOC104805045 Tarenaya hassleriana HOM05D003357 ORTHO05D003779 3.1e-32 142.5 165 59.4
unitig_749.g13510 Utricularia gibba HOM05D000349 ORTHO05D003779 5.2e-32 141.7 131 55.0
MELO3C012699.2 Cucumis melo HOM05D003357 ORTHO05D003779 1.5e-31 140.2 166 57.8
Peaxi162Scf00003g03752 Petunia axillaris HOM05D003357 ORTHO05D003779 1.5e-31 140.2 138 52.9
Peaxi162Scf00011g00031 Petunia axillaris HOM05D003357 ORTHO05D003779 2.0e-31 139.8 143 51.0
Gohir.D02G232200 Gossypium hirsutum HOM05D003357 ORTHO05D003779 3.4e-31 139.0 133 54.1
MELO3C031692.2 Cucumis melo HOM05D003357 ORTHO05D003779 5.8e-31 138.3 177 55.9
SalBow5G0183 Salvia bowleyana HOM05D003357 ORTHO05D003779 7.6e-31 137.9 133 55.6
SalBow5G2536 Salvia bowleyana HOM05D003357 ORTHO05D003779 7.6e-31 137.9 133 55.6
Gorai.005G260000 Gossypium raimondii HOM05D003357 ORTHO05D003779 9.9e-31 137.5 132 53.8
Migut.B00658 Erythranthe guttata HOM05D003357 ORTHO05D003779 1.3e-30 137.1 133 54.1
Migut.N01027 Erythranthe guttata HOM05D003357 ORTHO05D003779 1.3e-30 137.1 138 53.6
ClCG00G003530 Citrullus lanatus HOM05D003357 ORTHO05D003779 1.7e-30 136.7 166 57.8
ClCG09G014530 Citrullus lanatus HOM05D003357 ORTHO05D003779 1.7e-30 136.7 166 57.8
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 1.7e-30 136.7 135 53.3
CsaV3_7G022210 Cucumis sativus L. HOM05D003357 ORTHO05D003779 1.7e-30 136.7 166 56.6
Ciclev10002130m.g Citrus clementina HOM05D003357 ORTHO05D003779 3.8e-30 135.6 133 52.6
SGA_v2.0_scaffold110G31275 Striga asiatica HOM05D003357 ORTHO05D003779 3.8e-30 135.6 131 54.2
Cpa.g.sc2.31 Carica papaya HOM05D003357 ORTHO05D003779 6.4e-30 134.8 130 53.8
ClCG05G009890 Citrullus lanatus HOM05D003357 ORTHO05D003779 6.4e-30 134.8 140 52.1
Gohir.A03G210600 Gossypium hirsutum HOM05D003357 ORTHO05D003779 6.4e-30 134.8 132 52.3
CiPaw.06G149700 Carya illinoinensis HOM05D003357 ORTHO05D003779 8.4e-30 134.4 130 55.4
Potri.003G021934 Populus trichocarpa HOM05D003357 ORTHO05D003779 8.4e-30 134.4 135 51.9
Haze_01610 Corylus avellana HOM05D003357 ORTHO05D003779 1.1e-29 134.0 130 56.2
Haze_01612 Corylus avellana HOM05D003357 ORTHO05D003779 1.1e-29 134.0 130 56.2
Atru.chr6.1007 Acer truncatum HOM05D003357 ORTHO05D003779 1.4e-29 133.7 130 51.5
arahy.Tifrunner.gnm1.ann1.11V3F3 Arachis hypogaea HOM05D003357 ORTHO05D003779 1.4e-29 133.7 124 55.6
arahy.Tifrunner.gnm1.ann1.I2CYKQ Arachis hypogaea HOM05D003357 ORTHO05D003779 1.4e-29 133.7 124 55.6
Cfa005555 Carpinus fangiana HOM05D003357 ORTHO05D003779 1.4e-29 133.7 130 55.4
Duzib248G1129 Durio zibethinus HOM05D003357 ORTHO05D003779 1.4e-29 133.7 133 52.6
TWI23G0276 Tripterygium wilfordii HOM05D003357 ORTHO05D003779 1.9e-29 133.3 130 55.4
Sc02g0001800 Simmondsia chinensis HOM05D003357 ORTHO05D003779 3.2e-29 132.5 133 53.4
Thecc.02G042200 Theobroma cacao HOM05D003357 ORTHO05D003779 3.2e-29 132.5 133 52.6
PSO017G4220 Papaver somniferum HOM05D003357 ORTHO05D003779 4.1e-29 132.1 176 51.1
PSO170G2411 Papaver somniferum HOM05D003357 ORTHO05D003779 4.1e-29 132.1 176 51.1
Duzib052G0578 Durio zibethinus HOM05D003357 ORTHO05D003779 5.4e-29 131.7 143 51.0
Thhalv10001009m.g Eutrema salsugineum HOM05D003357 ORTHO05D003779 5.4e-29 131.7 126 54.8
Nn5g27960 Nelumbo nucifera HOM05D003357 ORTHO05D003779 5.4e-29 131.7 123 56.9
TWI14G1244 Tripterygium wilfordii HOM05D003357 ORTHO05D003779 7.1e-29 131.3 130 54.6
Ca_00094_v3 Cicer arietinum L. HOM05D003357 ORTHO05D003779 9.2e-29 131.0 118 55.9
Ca_29933_v3 Cicer arietinum L. HOM05D003357 ORTHO05D003779 9.2e-29 131.0 118 55.9
TPR.G19716 Trifolium pratense HOM05D003357 ORTHO05D003779 9.2e-29 131.0 121 54.5
Sed0004213 Sechium edule HOM05D003357 ORTHO05D003779 1.2e-28 130.6 163 56.4
DCAR_021821 Daucus carota HOM05D003357 ORTHO05D003779 1.6e-28 130.2 137 49.6
AL5G10030 Arabidopsis lyrata HOM05D003357 ORTHO05D003779 2.1e-28 129.8 122 56.6
Sabra03G0013900 Salix brachista HOM05D003357 ORTHO05D003779 2.1e-28 129.8 154 45.5
Gohir.A01G001200 Gossypium hirsutum HOM05D003357 ORTHO05D003779 2.7e-28 129.4 135 49.6
Gohir.D01G000900 Gossypium hirsutum HOM05D003357 ORTHO05D003779 2.7e-28 129.4 135 49.6
Gorai.002G001400 Gossypium raimondii HOM05D003357 ORTHO05D003779 2.7e-28 129.4 135 49.6
Carub.0005s0007 Capsella rubella HOM05D003357 ORTHO05D003779 3.5e-28 129.0 122 55.7
QL11p019146 Quercus lobata HOM05D003357 ORTHO05D003779 3.5e-28 129.0 130 53.8
AT2G01080 Arabidopsis thaliana HOM05D003357 ORTHO05D003779 4.6e-28 128.6 122 55.7
MD08G1227400 Malus domestica HOM05D003357 ORTHO05D003779 4.6e-28 128.6 129 55.0
Lalb_Chr20g0123351 Lupinus albus HOM05D003357 ORTHO05D003779 6.0e-28 128.3 126 51.6
Medtr2g007830 Medicago truncatula HOM05D003357 ORTHO05D003779 6.0e-28 128.3 124 53.2
CARHR143630 Cardamine hirsuta HOM05D003357 ORTHO05D003779 7.8e-28 127.9 121 57.9
CsaV3_3G018700 Cucumis sativus L. HOM05D003357 ORTHO05D003779 7.8e-28 127.9 172 54.1
Manes.07G012600 Manihot esculenta HOM05D003357 ORTHO05D003779 7.8e-28 127.9 141 48.9
Sed0024772 Sechium edule HOM05D003357 ORTHO05D003779 7.8e-28 127.9 137 49.6
VMungo0540G1809 Vigna mungo HOM05D003357 ORTHO05D003779 7.8e-28 127.9 119 52.9
CDE06G1413 Ceratophyllum demersum HOM05D003357 ORTHO05D003779 1.0e-27 127.5 163 48.5
MBI06_g01047_MAGBIO Magnolia biondii HOM05D003357 ORTHO05D003779 1.0e-27 127.5 152 62.5
Phvul.006G211600 Phaseolus vulgaris HOM05D003357 ORTHO05D003779 1.7e-27 126.7 119 52.1
A02p31650 Brassica napus HOM05D003357 ORTHO05D003779 2.3e-27 126.3 126 52.4
C02p48990 Brassica napus HOM05D003357 ORTHO05D003779 2.3e-27 126.3 126 52.4
BolC2t10993H Brassica oleracea HOM05D003357 ORTHO05D003779 2.3e-27 126.3 126 52.4
BraA02t08168Z Brassica rapa HOM05D003357 ORTHO05D003779 2.3e-27 126.3 126 52.4
Eucgr.I02708 Eucalyptus grandis HOM05D003357 ORTHO05D003779 2.3e-27 126.3 137 50.4
Glyma.08G184000 Glycine max HOM05D003357 ORTHO05D003779 2.3e-27 126.3 119 52.1
BcaC06g34220 Brassica carinata HOM05D003357 ORTHO05D003779 5.1e-27 125.2 128 50.8
A06p44690 Brassica napus HOM05D003357 ORTHO05D003779 6.6e-27 124.8 127 51.2
BolC7t43694H Brassica oleracea HOM05D003357 ORTHO05D003779 6.6e-27 124.8 127 51.2
BraA06t27342Z Brassica rapa HOM05D003357 ORTHO05D003779 6.6e-27 124.8 127 51.2
Sp2g12550 Schrenkiella parvula HOM05D003357 ORTHO05D003779 6.6e-27 124.8 126 54.8
CiPaw.05G042100 Carya illinoinensis HOM05D003357 ORTHO05D003779 8.7e-27 124.4 134 52.2
CDE06G2726 Ceratophyllum demersum HOM05D003357 ORTHO05D003779 8.7e-27 124.4 163 47.9
Manes.10G133000 Manihot esculenta HOM05D003357 ORTHO05D003779 8.7e-27 124.4 136 48.5
FAN13G0157 Fragaria x ananassa HOM05D003357 ORTHO05D003779 1.9e-26 123.2 123 52.8
Lj6g0024688 Lotus japonicus HOM05D003357 ORTHO05D003779 1.9e-26 123.2 118 51.7
unitig_26.g9557 Utricularia gibba HOM05D003357 ORTHO05D003779 1.9e-26 123.2 112 55.4
FvH4_5g29780 Fragaria vesca HOM05D003357 ORTHO05D003779 2.5e-26 122.9 122 52.5
FAN18G4337 Fragaria x ananassa HOM05D003357 ORTHO05D003779 2.5e-26 122.9 122 52.5
arahy.Tifrunner.gnm1.ann1.GBW8AP Arachis hypogaea HOM05D003357 ORTHO05D003779 3.3e-26 122.5 134 47.8
arahy.Tifrunner.gnm1.ann1.S31UIX Arachis hypogaea HOM05D003357 ORTHO05D003779 3.3e-26 122.5 134 47.8
FAN08G0651 Fragaria x ananassa HOM05D003357 ORTHO05D003779 3.3e-26 122.5 123 52.0
Rhsim11G0132500 Rhododendron simsii HOM05D003357 ORTHO05D003779 5.6e-26 121.7 96 63.5
Glyma.15G048800 Glycine max HOM05D003357 ORTHO05D003779 7.3e-26 121.3 116 50.9
ECA236G2437 Erigeron canadensis HOM05D003357 ORTHO05D003779 9.6e-26 120.9 175 46.3
CANSAT11G1252 Cannabis sativa HOM05D003357 ORTHO05D003779 1.6e-25 120.2 138 47.8
Aa31LG2G8800 Aethionema arabicum HOM05D003357 ORTHO05D003779 2.8e-25 119.4 164 54.3
ECA234G2199 Erigeron canadensis HOM05D003357 ORTHO05D003779 2.8e-25 119.4 96 60.4
Potri.001G208000 Populus trichocarpa HOM05D003357 ORTHO05D003779 3.6e-25 119.0 135 47.4
PGR142G3651 Punica granatum HOM05D003357 ORTHO05D003779 4.7e-25 118.6 135 50.4
Manes.03G085403 Manihot esculenta HOM05D003357 ORTHO05D003779 6.2e-25 118.2 136 46.3
Manes.12G086500 Manihot esculenta HOM05D003357 ORTHO05D003779 6.2e-25 118.2 136 46.3
Manes.01G111900 Manihot esculenta HOM05D003357 ORTHO05D003779 8.1e-25 117.9 136 48.5
Manes.03G114750 Manihot esculenta HOM05D003357 ORTHO05D003779 1.4e-24 117.1 136 48.5
Prupe.1G564500 Prunus persica HOM05D003357 ORTHO05D003779 2.4e-24 116.3 133 47.4
Aqoxy5G02480 Aquilegia oxysepala HOM05D003357 ORTHO05D003779 4.0e-24 115.5 137 45.3
Manes.10G036100 Manihot esculenta HOM05D003357 ORTHO05D003779 6.9e-24 114.8 136 44.9
MD15G1419800 Malus domestica HOM05D003357 ORTHO05D003779 9.0e-24 114.4 127 47.2
Manes.18G118000 Manihot esculenta HOM05D003357 ORTHO05D003779 9.9e-23 110.9 146 43.2
Psat1g219760 Pisum sativum HOM05D003357 ORTHO05D003779 2.2e-22 109.8 91 58.2
RcHm_v2.0_Chr7g0223311 Rosa chinensis HOM05D003357 ORTHO05D003779 4.9e-22 108.6 91 57.1
Manes.07G113500 Manihot esculenta HOM05D003357 ORTHO05D003779 1.6e-20 103.6 126 43.7
Peaxi162Scf00018g00081 Petunia axillaris HOM05D003357 ORTHO05D003779 2.1e-20 103.2 96 52.1
Zm00001eb011530 Zea mays HOM05D003357 ORTHO05D003779 2.7e-20 102.8 140 42.1
Os03g0262700 Oryza sativa ssp. japonica HOM05D003357 ORTHO05D003779 4.6e-20 102.1 147 41.5
Zm00001eb398130 Zea mays HOM05D003357 ORTHO05D003779 1.7e-19 100.1 138 41.3
HPP92_011155 Vanilla planifolia HOM05D003357 ORTHO05D003779 2.3e-19 99.8 133 45.1
CSS0006159 Camellia sinensis var. sinensis HOM05D003357 ORTHO05D003779 5.1e-19 98.6 74 67.6
Manes.17G088150 Manihot esculenta HOM05D003357 ORTHO05D003779 2.5e-18 96.3 122 41.8
ATR0121G007 Amborella trichopoda HOM05D003357 ORTHO05D003779 7.3e-18 94.7 143 40.6
SEGI_11822 Sequoiadendron giganteum HOM05D003357 ORTHO05D003779 9.6e-18 94.4 157 36.3
SHI16610 Sapria himalayana HOM05D003357 ORTHO05D003779 6.2e-17 91.7 123 43.1
Cc02_g22170 Coffea canephora HOM05D003357 ORTHO05D003779 1.4e-16 90.5 74 59.5
GSVIVG01029690001 Vitis vinifera HOM05D003357 ORTHO05D003779 9.0e-16 87.8 60 66.7
Glyma.08G077900 Glycine max HOM05D003357 ORTHO05D003779 5.8e-15 85.1 138 36.2
HPP92_027206 Vanilla planifolia HOM05D003357 ORTHO05D003779 1.1e-13 80.9 174 42.5
SEGI_24152 Sequoiadendron giganteum HOM05D003357 ORTHO05D003779 1.4e-13 80.5 118 38.1
EL10Ac9g22198 Beta vulgaris HOM05D003357 ORTHO05D003779 1.9e-13 80.1 122 40.2
ECA240G3987 Erigeron canadensis HOM05D000003 ORTHO05D000004 9.3e-13 77.8 93 45.2
AUR62027010 Chenopodium quinoa HOM05D003357 ORTHO05D003779 1.0e-11 74.3 122 37.7
AUR62030850 Chenopodium quinoa HOM05D000445 ORTHO05D000314 1.0e-11 74.3 122 37.7
Lj6g0024689 Lotus japonicus HOM05D003357 ORTHO05D003779 6.7e-11 71.6 160 38.1
Manes.04G150000 Manihot esculenta HOM05D003357 ORTHO05D003779 9.6e-10 67.8 169 27.2
MBI13_g01678_MAGBIO Magnolia biondii HOM05D003357 ORTHO05D003779 1.1e-08 64.3 160 28.1
Hma1.2p1_0090F.1_g045910 Hydrangea macrophylla HOM05D003357 ORTHO05D003779 1.8e-08 63.5 118 32.2
ATR0317G009 Amborella trichopoda HOM05D003357 ORTHO05D003779 3.4e-07 59.3 122 29.5
HanXRQChr15g0467891 Helianthus annuus HOM05D003357 ORTHO05D003779 7.6e-07 58.2 74 47.3
Dinv37830 Davidia involucrata HOM05D003357 ORTHO05D003779 4.9e-06 55.5 151 26.5
MD15G1282800 Malus domestica HOM05D003357 ORTHO05D003779 8.4e-06 54.7 60 43.3


User provided reference genes

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