Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0066301 Helianthus annuus HOM05D004507 ORTHO05D004874 1.9e-84 315.8 167 100.0
HanXRQChr09g0245171 Helianthus annuus HOM05D004507 ORTHO05D004874 2.4e-66 255.8 162 83.3
Lsat_1_v5_gn_7_51920 Lactuca sativa HOM05D004507 ORTHO05D004874 4.2e-55 218.4 169 71.6
ECA240G1410 Erigeron canadensis HOM05D004507 ORTHO05D004874 4.0e-50 201.8 157 71.3
Lsat_1_v5_gn_8_64381 Lactuca sativa HOM05D004507 ORTHO05D004874 9.7e-44 180.6 161 63.4
HanXRQChr10g0306471 Helianthus annuus HOM05D004507 ORTHO05D004874 1.8e-42 176.4 159 63.5
HanXRQChr12g0358031 Helianthus annuus HOM05D004507 ORTHO05D004874 1.8e-42 176.4 155 65.2
Lsat_1_v5_gn_5_87560 Lactuca sativa HOM05D004507 ORTHO05D004874 1.5e-41 173.3 158 60.1
ECA234G3792 Erigeron canadensis HOM05D004507 ORTHO05D004874 9.3e-39 164.1 168 58.9
Potri.006G177000 Populus trichocarpa HOM05D004507 ORTHO05D004874 7.4e-36 154.5 158 58.2
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 9.7e-36 154.1 161 53.4
Sabra06G0135200 Salix brachista HOM05D004507 ORTHO05D004874 1.7e-35 153.3 160 60.0
Potri.018G099100 Populus trichocarpa HOM05D004507 ORTHO05D004874 4.8e-35 151.8 160 58.1
TAR626G0275 Trochodendron aralioides HOM05D004507 ORTHO05D004874 8.2e-35 151.0 161 55.9
Peaxi162Scf00525g00089 Petunia axillaris HOM05D004507 ORTHO05D004874 6.9e-34 147.9 161 53.4
Dinv41307 Davidia involucrata HOM05D004507 ORTHO05D004874 1.2e-33 147.1 163 55.8
QL02p095594 Quercus lobata HOM05D004507 ORTHO05D004874 1.2e-33 147.1 162 53.1
Oeu045661.2 Olea europaea HOM05D004507 ORTHO05D004874 1.5e-33 146.7 154 54.5
Atru.chr7.491 Acer truncatum HOM05D004507 ORTHO05D004874 3.4e-33 145.6 165 52.1
Duzib150G1659 Durio zibethinus HOM05D004507 ORTHO05D004874 7.7e-33 144.4 162 52.5
Nitab4.5_0002587g0090 Nicotiana tabacum HOM05D004507 ORTHO05D004874 7.7e-33 144.4 163 54.0
Thecc.09G160500 Theobroma cacao HOM05D004507 ORTHO05D004874 7.7e-33 144.4 162 51.9
Duzib187G0534 Durio zibethinus HOM05D004507 ORTHO05D004874 2.9e-32 142.5 160 51.2
Nn8g40236 Nelumbo nucifera HOM05D004507 ORTHO05D004874 6.5e-32 141.4 157 51.6
Sabra18G0085600 Salix brachista HOM05D004507 ORTHO05D004874 1.1e-31 140.6 158 53.8
TAR383G0901 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.4e-31 140.2 161 55.3
TAR625G0362 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.4e-31 140.2 160 52.5
Dinv42787 Davidia involucrata HOM05D004507 ORTHO05D004874 3.2e-31 139.0 163 52.1
Dinv43314 Davidia involucrata HOM05D004507 ORTHO05D004874 3.2e-31 139.0 163 52.1
Duzib168G0769 Durio zibethinus HOM05D004507 ORTHO05D004874 5.5e-31 138.3 164 51.2
Nitab4.5_0001427g0130 Nicotiana tabacum HOM05D004507 ORTHO05D004874 2.1e-30 136.3 182 45.6
PGSC0003DMG400011171 Solanum tuberosum HOM05D004507 ORTHO05D004874 2.7e-30 136.0 157 51.0
Rhsim01G0012400 Rhododendron simsii HOM05D004507 ORTHO05D004874 7.9e-30 134.4 156 53.2
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 1.0e-29 134.0 161 47.8
Oeu031854.1 Olea europaea HOM05D004507 ORTHO05D004874 1.4e-29 133.7 155 51.6
Nitab4.5_0007380g0020 Nicotiana tabacum HOM05D004507 ORTHO05D004874 3.0e-29 132.5 166 55.4
Sopen07g002400 Solanum pennellii HOM05D004507 ORTHO05D004874 3.9e-29 132.1 159 50.3
Manes.14G147700 Manihot esculenta HOM05D004507 ORTHO05D004874 5.1e-29 131.7 158 52.5
CiPaw.08G040400 Carya illinoinensis HOM05D004507 ORTHO05D004874 6.7e-29 131.3 151 49.0
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 1.5e-28 130.2 158 51.3
COL.COLO4_24287 Corchorus olitorius HOM05D004507 ORTHO05D004874 2.6e-28 129.4 167 52.1
Hma1.2p1_0156F.1_g068730 Hydrangea macrophylla HOM05D004507 ORTHO05D004874 3.3e-28 129.0 163 49.7
Nn2g12545 Nelumbo nucifera HOM05D004507 ORTHO05D004874 5.7e-28 128.3 150 53.3
Cfa013550 Carpinus fangiana HOM05D004507 ORTHO05D004874 7.4e-28 127.9 158 46.2
Gohir.D08G097200 Gossypium hirsutum HOM05D004507 ORTHO05D004874 7.4e-28 127.9 160 48.8
MBI15_g25682_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 9.7e-28 127.5 161 50.9
Aqoxy7G03243 Aquilegia oxysepala HOM05D004507 ORTHO05D004874 1.7e-27 126.7 157 51.6
Cpa.g.sc75.20 Carica papaya HOM05D004507 ORTHO05D004874 2.2e-27 126.3 162 48.8
Gorai.004G104000 Gossypium raimondii HOM05D004507 ORTHO05D004874 3.7e-27 125.6 160 48.1
PGR142G2563 Punica granatum HOM05D004507 ORTHO05D004874 4.8e-27 125.2 156 51.3
TAR636G1916 Trochodendron aralioides HOM05D004507 ORTHO05D004874 4.8e-27 125.2 158 49.4
Eucgr.C00212 Eucalyptus grandis HOM05D004507 ORTHO05D004874 6.3e-27 124.8 163 47.2
MD16G1262200 Malus domestica HOM05D004507 ORTHO05D004874 1.8e-26 123.2 166 50.6
VMungo1215G3417 Vigna mungo HOM05D004507 ORTHO05D004874 1.8e-26 123.2 161 44.1
Haze_22171 Corylus avellana HOM05D004507 ORTHO05D004874 6.9e-26 121.3 160 46.2
MBI14_g08083_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 1.2e-25 120.6 161 49.1
Migut.K00276 Erythranthe guttata HOM05D004507 ORTHO05D004874 2.6e-25 119.4 161 42.9
Phvul.003G151300 Phaseolus vulgaris HOM05D004507 ORTHO05D004874 5.9e-25 118.2 160 45.6
Lalb_Chr12g0199041 Lupinus albus HOM05D004507 ORTHO05D004874 7.7e-25 117.9 161 44.7
AUR62039753 Chenopodium quinoa HOM05D004507 ORTHO05D004874 2.9e-24 115.9 159 46.5
MD13G1260000 Malus domestica HOM05D004507 ORTHO05D004874 3.8e-24 115.5 173 48.0
Prupe.1G097600 Prunus persica HOM05D004507 ORTHO05D004874 3.8e-24 115.5 162 49.4
DCAR_017942 Daucus carota HOM05D004507 ORTHO05D004874 1.4e-23 113.6 166 44.6
Glyma.13G091500 Glycine max HOM05D004507 ORTHO05D004874 1.4e-23 113.6 159 42.8
AUR62028409 Chenopodium quinoa HOM05D004507 ORTHO05D004874 2.5e-23 112.8 162 46.9
TWI34G1692 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 4.2e-23 112.1 165 46.1
SGA_v2.0_scaffold66G22517 Striga asiatica HOM05D004507 ORTHO05D004874 7.2e-23 111.3 162 45.1
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 9.4e-23 110.9 158 44.3
PSO782G3560 Papaver somniferum HOM05D004507 ORTHO05D004874 9.4e-23 110.9 165 46.7
MSTRG.10721 Avicennia marina HOM05D004507 ORTHO05D004874 2.1e-22 109.8 154 47.4
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 3.6e-22 109.0 156 42.3
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 3.6e-22 109.0 157 48.4
Sed0016542 Sechium edule HOM05D004507 ORTHO05D004874 3.6e-22 109.0 153 46.4
CDE05G1486 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 4.7e-22 108.6 159 42.1
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 1.8e-21 106.7 154 44.8
MSTRG.19674 Avicennia marina HOM05D004507 ORTHO05D004874 2.3e-21 106.3 160 49.4
ClCG06G012890 Citrullus lanatus HOM05D004507 ORTHO05D004874 3.0e-21 105.9 153 45.8
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 3.0e-21 105.9 154 44.8
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 3.0e-21 105.9 154 44.8
Lj4g0026981 Lotus japonicus HOM05D004507 ORTHO05D004874 3.0e-21 105.9 162 43.2
EL10Ac8g18870 Beta vulgaris HOM05D004507 ORTHO05D004874 5.2e-21 105.1 168 43.5
CDE02G1288 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 5.2e-21 105.1 159 42.1
SGA_v2.0_scaffold69G23313 Striga asiatica HOM05D004507 ORTHO05D004874 8.8e-21 104.4 167 44.9
MELO3C010170.2 Cucumis melo HOM05D004507 ORTHO05D004874 3.3e-20 102.4 153 44.4
MSTRG.6179 Avicennia marina HOM05D004507 ORTHO05D004874 5.7e-20 101.7 160 42.5
ATR0580G302 Amborella trichopoda HOM05D004507 ORTHO05D004874 9.7e-20 100.9 152 44.1
CsaV3_1G029460 Cucumis sativus L. HOM05D004507 ORTHO05D004874 1.7e-19 100.1 153 43.8
TPR.G5348 Trifolium pratense HOM05D004507 ORTHO05D004874 6.3e-19 98.2 162 38.9
THA.LOC104819987 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.1e-18 97.4 158 43.7
Psat0s1742g0040 Pisum sativum HOM05D004507 ORTHO05D004874 1.4e-18 97.1 157 40.8
THA.LOC104803518 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.4e-18 97.1 158 43.0
TWI32G0773 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 1.8e-18 96.7 160 41.9
CARHR238310 Cardamine hirsuta HOM05D004507 ORTHO05D004874 2.4e-18 96.3 157 42.7
Carub.0007s1019 Capsella rubella HOM05D004507 ORTHO05D004874 7.0e-18 94.7 160 42.5
Sed0015365 Sechium edule HOM05D004507 ORTHO05D004874 9.1e-18 94.4 154 40.9
THA.LOC104803927 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.6e-17 93.6 158 41.1
Sp7g28290 Schrenkiella parvula HOM05D004507 ORTHO05D004874 3.5e-17 92.4 158 41.8
AL7G21740 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 5.9e-17 91.7 157 42.7
Thhalv10026358m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 7.7e-17 91.3 158 41.8
AT4G30410 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 1.3e-16 90.5 154 41.6
arahy.Tifrunner.gnm1.ann1.RZ4SGF Arachis hypogaea HOM05D004507 ORTHO05D004874 3.8e-16 89.0 157 38.9
Medtr4g129560 Medicago truncatula HOM05D004507 ORTHO05D004874 3.8e-16 89.0 157 36.9
BcaB03g12646 Brassica carinata HOM05D004507 ORTHO05D004874 8.5e-16 87.8 160 41.2
BcaB03g12647 Brassica carinata HOM05D004507 ORTHO05D004874 8.5e-16 87.8 160 41.2
BcaNung02991 Brassica carinata HOM05D004507 ORTHO05D004874 8.5e-16 87.8 156 40.4
arahy.Tifrunner.gnm1.ann1.40EERC Arachis hypogaea HOM05D004507 ORTHO05D004874 1.1e-15 87.4 157 38.2
A08p19250 Brassica napus HOM05D004507 ORTHO05D004874 1.1e-15 87.4 156 41.0
BraA08t33886Z Brassica rapa HOM05D004507 ORTHO05D004874 1.1e-15 87.4 156 41.0
BcaC01g01152 Brassica carinata HOM05D004507 ORTHO05D004874 1.5e-15 87.0 160 41.2
C03p88720 Brassica napus HOM05D004507 ORTHO05D004874 1.5e-15 87.0 160 41.2
BolC3t21183H Brassica oleracea HOM05D004507 ORTHO05D004874 1.9e-15 86.7 160 41.2
C01p08650 Brassica napus HOM05D004507 ORTHO05D004874 3.2e-15 85.9 160 39.4
CSS0033256 Camellia sinensis var. sinensis HOM05D004507 ORTHO05D004874 5.5e-15 85.1 121 47.9
A01p07760 Brassica napus HOM05D004507 ORTHO05D004874 7.2e-15 84.7 160 38.8
BraA01t00720Z Brassica rapa HOM05D004507 ORTHO05D004874 7.2e-15 84.7 160 38.8
SEGI_26334 Sequoiadendron giganteum HOM05D000047 ORTHO05D000044 7.2e-15 84.7 157 37.6
MELO3C004096.2 Cucumis melo HOM05D004507 ORTHO05D004874 2.1e-14 83.2 155 40.0
BcaC09g51830 Brassica carinata HOM05D004507 ORTHO05D004874 2.7e-14 82.8 160 38.8
BolC1t00847H Brassica oleracea HOM05D004507 ORTHO05D004874 2.7e-14 82.8 160 38.8
Sp6g19460 Schrenkiella parvula HOM05D004507 ORTHO05D004874 3.6e-14 82.4 155 35.5
BcaB08g36143 Brassica carinata HOM05D004507 ORTHO05D004874 4.7e-14 82.0 157 38.9
Aa31LG2G20120 Aethionema arabicum HOM05D004507 ORTHO05D004874 6.1e-14 81.6 166 37.3
AT5G57780 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 6.1e-14 81.6 152 36.8
THA.LOC104817812 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 6.1e-14 81.6 154 38.3
CsaV3_2G007890 Cucumis sativus L. HOM05D004507 ORTHO05D004874 1.4e-13 80.5 155 39.4
unitig_62.g23492 Utricularia gibba HOM05D004507 ORTHO05D004874 5.2e-13 78.6 155 36.1
AL8G33810 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 1.5e-12 77.0 152 36.8
Carub.0008s1829 Capsella rubella HOM05D004507 ORTHO05D004874 2.0e-12 76.6 152 37.5
CARHR271510 Cardamine hirsuta HOM05D004507 ORTHO05D004874 5.7e-12 75.1 157 35.7
A10p15150 Brassica napus HOM05D004507 ORTHO05D004874 7.5e-12 74.7 157 35.7
BraA10t43598Z Brassica rapa HOM05D004507 ORTHO05D004874 7.5e-12 74.7 157 35.7
BcaC04g19929 Brassica carinata HOM05D004507 ORTHO05D004874 9.7e-12 74.3 157 35.7
BolC9t57818H Brassica oleracea HOM05D004507 ORTHO05D004874 9.7e-12 74.3 157 35.7
C09p49660 Brassica napus HOM05D004507 ORTHO05D004874 1.7e-11 73.6 157 35.7
Sed0016375 Sechium edule HOM05D004507 ORTHO05D004874 1.7e-11 73.6 153 34.0
Lalb_Chr07g0180071 Lupinus albus HOM05D004507 ORTHO05D004874 2.2e-11 73.2 157 32.5
Solyc07g006310.1 Solanum lycopersicum HOM05D004507 ORTHO05D004874 2.8e-11 72.8 47 74.5
Thhalv10014877m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 6.3e-11 71.6 160 33.8
SEGI_03314 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 1.8e-10 70.1 156 30.8
ClCG11G012600 Citrullus lanatus HOM05D004507 ORTHO05D004874 2.4e-10 69.7 149 38.3
Zm00001eb412560 Zea mays HOM05D004507 ORTHO05D004874 3.1e-10 69.3 171 30.4
SEGI_00160 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 4.1e-10 68.9 163 31.9
SHI49167 Sapria himalayana HOM05D004507 ORTHO05D004874 5.3e-10 68.6 47 70.2
Cc06_g14060 Coffea canephora HOM05D004507 ORTHO05D004874 7.7e-09 64.7 155 36.1
CANSAT11G0203 Cannabis sativa HOM05D004507 ORTHO05D004874 1.7e-08 63.5 154 32.5
SHI24759 Sapria himalayana HOM05D016562 ORTHO05D004874 2.9e-08 62.8 45 68.9
Os02g0791300 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 5.0e-08 62.0 156 31.4
Os02g0178700 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 6.5e-08 61.6 150 33.3
GSVIVG01023743001 Vitis vinifera HOM05D004507 ORTHO05D004874 1.1e-07 60.8 50 64.0
SEGI_25117 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 2.5e-07 59.7 159 34.0
Zm00001eb233860 Zea mays HOM05D004507 ORTHO05D004874 4.2e-07 58.9 53 52.8
SEGI_30051 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 1.6e-06 57.0 149 30.9
SEGI_10087 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 2.1e-06 56.6 164 30.5
SEGI_14977 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 4.7e-06 55.5 153 30.7
SEGI_39312 Sequoiadendron giganteum HOM05D004507 ORTHO05D004874 4.7e-06 55.5 164 29.3


User provided reference genes

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