Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 5.4e-187 657.5 335 100.0
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 3.1e-118 429.1 365 67.1
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 6.3e-111 404.8 349 67.3
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 1.7e-103 380.2 356 64.6
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 1.4e-89 334.0 374 55.6
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 4.7e-82 308.9 371 54.2
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 1.1e-81 307.8 376 53.2
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 1.4e-81 307.4 365 51.5
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 8.9e-81 304.7 379 52.5
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 1.2e-80 304.3 370 50.8
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 3.4e-80 302.8 379 52.2
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 4.9e-79 298.9 377 50.7
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 8.3e-79 298.1 380 49.5
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 6.0e-77 292.0 379 50.9
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 2.3e-76 290.0 388 49.5
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 3.9e-76 289.3 385 49.9
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 3.9e-76 289.3 385 50.4
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 8.6e-76 288.1 365 52.1
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 1.9e-75 287.0 384 49.2
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 4.3e-75 285.8 377 49.9
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 9.5e-75 284.6 331 54.7
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 1.2e-74 284.3 374 50.0
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 1.2e-74 284.3 374 50.0
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.2e-74 284.3 372 49.7
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 3.6e-74 282.7 374 50.5
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 8.9e-73 278.1 372 49.2
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 1.2e-72 277.7 373 50.7
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 1.5e-72 277.3 374 50.8
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 1.5e-72 277.3 373 50.7
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 1.1e-70 271.2 375 49.6
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 4.6e-69 265.8 366 47.5
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 6.0e-69 265.4 382 50.5
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 3.9e-68 262.7 370 47.3
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 3.1e-65 253.1 305 53.4
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 8.9e-65 251.5 374 47.9
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 1.2e-64 251.1 361 48.8
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 1.2e-64 251.1 382 46.6
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 1.2e-64 251.1 369 47.2
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 1.5e-64 250.8 379 44.3
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 4.4e-64 249.2 352 48.0
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 5.8e-64 248.8 400 44.5
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 9.9e-64 248.1 369 45.3
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 9.9e-64 248.1 347 47.6
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 1.3e-63 247.7 347 47.8
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 1.7e-63 247.3 375 46.4
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.7e-63 247.3 372 45.4
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 2.2e-63 246.9 372 45.7
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 2.9e-63 246.5 404 43.1
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 4.9e-63 245.7 379 45.6
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 4.9e-63 245.7 378 45.2
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 1.1e-62 244.6 386 46.1
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 1.9e-62 243.8 384 45.1
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 2.4e-62 243.4 373 47.7
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 7.1e-62 241.9 378 45.2
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 1.6e-61 240.7 406 42.1
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 2.1e-61 240.4 394 44.9
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 4.6e-61 239.2 380 43.4
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 7.8e-61 238.4 385 45.7
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 1.0e-60 238.0 364 47.3
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 1.3e-60 237.7 412 42.0
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 8.7e-60 235.0 376 46.3
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 1.1e-59 234.6 371 47.2
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 5.6e-59 232.3 406 41.6
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 2.1e-58 230.3 408 39.7
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 8.1e-58 228.4 378 43.7
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 3.1e-57 226.5 410 42.7
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 4.0e-57 226.1 417 40.8
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 5.2e-57 225.7 422 38.6
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 2.6e-56 223.4 377 44.3
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 2.6e-56 223.4 365 44.4
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 2.6e-56 223.4 377 45.1
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 3.4e-56 223.0 369 42.0
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 1.7e-55 220.7 362 43.1
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 8.4e-55 218.4 371 41.5
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 2.4e-54 216.9 388 41.2
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 2.4e-54 216.9 352 44.3
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 3.2e-54 216.5 331 45.6
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 4.2e-54 216.1 388 40.5
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 9.3e-54 214.9 417 39.3
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 9.3e-54 214.9 358 41.9
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 2.1e-53 213.8 364 42.6
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 2.7e-53 213.4 358 44.4
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 3.5e-53 213.0 416 38.9
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 7.8e-53 211.8 394 39.3
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 1.0e-52 211.5 391 40.7
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 1.3e-52 211.1 373 40.2
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 1.7e-52 210.7 371 40.4
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 2.3e-52 210.3 331 44.4
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 8.7e-52 208.4 382 41.4
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 1.1e-51 208.0 386 39.4
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 1.1e-51 208.0 417 39.1
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 1.9e-51 207.2 383 38.1
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 1.9e-51 207.2 383 38.1
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 5.6e-51 205.7 383 38.1
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 9.6e-51 204.9 383 37.9
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.6e-50 204.1 370 41.1
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 1.1e-49 201.4 383 37.1
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 4.0e-49 199.5 383 36.8
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 9.0e-49 198.4 391 38.4
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 9.0e-49 198.4 311 43.4
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.5e-48 197.6 369 39.8
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.6e-48 196.8 262 47.3
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 4.9e-47 192.6 392 37.0
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 2.4e-46 190.3 392 37.0
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 7.1e-46 188.7 389 36.8
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 1.0e-44 184.9 393 39.2
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 1.8e-44 184.1 366 39.6
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 3.7e-42 176.4 366 36.9
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 1.1e-41 174.9 250 44.8
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 2.0e-40 170.6 387 35.4
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 2.6e-40 170.2 390 35.9
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 5.8e-40 169.1 387 35.9
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 7.6e-40 168.7 278 42.4
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 1.3e-39 167.9 219 46.6
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 4.6e-37 159.5 255 45.9
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 1.5e-35 154.5 268 41.8
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 9.6e-35 151.8 376 34.6
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 2.8e-34 150.2 383 36.8
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 1.8e-33 147.5 403 32.5
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 3.1e-33 146.7 340 35.0
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 1.2e-32 144.8 191 46.6
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 1.5e-32 144.4 229 43.7
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 8.4e-31 138.7 242 41.3
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 8.4e-31 138.7 225 42.7
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 1.1e-30 138.3 234 40.6
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 2.5e-30 137.1 370 32.2
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 1.6e-29 134.4 235 41.7
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 2.1e-29 134.0 245 40.8
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 2.1e-29 134.0 315 35.2
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 2.7e-29 133.7 234 40.6
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 1.0e-28 131.7 244 39.8
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.8e-28 131.0 249 37.8
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 3.0e-28 130.2 235 41.7
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 3.0e-28 130.2 233 39.5
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 3.9e-28 129.8 393 32.8
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 3.9e-28 129.8 233 41.6
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 8.7e-28 128.6 199 45.7
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 8.7e-28 128.6 227 42.3
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 1.9e-27 127.5 225 44.0
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 5.7e-27 125.9 325 35.4
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 7.4e-27 125.6 251 39.0
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 1.3e-26 124.8 239 40.2
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 1.3e-26 124.8 203 43.3
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 3.7e-26 123.2 214 39.3
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 1.1e-25 121.7 187 42.2
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.1e-25 121.7 233 39.5
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 1.8e-25 120.9 236 40.7
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 2.0e-24 117.5 247 37.7
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.5e-24 116.3 243 38.7
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 7.6e-24 115.5 251 37.8
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.3e-23 114.8 152 49.3
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 8.5e-23 112.1 229 38.4
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 2.1e-21 107.5 237 36.7
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 1.4e-20 104.8 243 35.8
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 6.7e-20 102.4 350 29.4
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 3.3e-19 100.1 240 36.2
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 3.4e-16 90.1 181 39.8
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 8.5e-15 85.5 143 44.8
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 8.5e-15 85.5 89 51.7
Rhsim01G0129600 Rhododendron simsii HOM05D004075 ORTHO05D004538 7.2e-14 82.4 121 45.5
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 4.7e-13 79.7 140 37.9
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 4.7e-13 79.7 140 37.9
BcaB01g00444 Brassica carinata HOM05D004075 ORTHO05D004538 6.1e-13 79.3 172 34.9
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 6.1e-13 79.3 140 39.3
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 5.1e-12 76.3 196 34.7
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 3.7e-10 70.1 271 28.0
CARHR117420 Cardamine hirsuta HOM05D001890 ORTHO05D004538 5.3e-09 66.2 114 43.0
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 2.0e-08 64.3 140 35.7
Lsat_1_v5_gn_7_68660 Lactuca sativa HOM05D002080 ORTHO05D002062 8.5e-07 58.9 40 75.0


User provided reference genes

Program Settings