Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0064551 Helianthus annuus HOM05D002291 ORTHO05D002496 2.9e-51 204.9 100 100.0
Lsat_1_v5_gn_7_47820 Lactuca sativa HOM05D002291 ORTHO05D002496 4.2e-26 121.3 89 66.3
HanXRQChr09g0243231 Helianthus annuus HOM05D002291 ORTHO05D002496 1.2e-25 119.8 93 67.7
ECA240G4705 Erigeron canadensis HOM05D002291 ORTHO05D002496 5.8e-20 100.9 85 62.4
HanXRQChr06g0182051 Helianthus annuus HOM05D002291 ORTHO05D002496 7.6e-20 100.5 77 64.9
Dinv43189 Davidia involucrata HOM05D002291 ORTHO05D002496 7.1e-18 94.0 81 61.7
HanXRQChr05g0143211 Helianthus annuus HOM05D002291 ORTHO05D002496 9.3e-18 93.6 80 60.0
Lsat_1_v5_gn_8_60480 Lactuca sativa HOM05D002291 ORTHO05D002496 9.3e-18 93.6 71 63.4
Oeu052182.1 Olea europaea HOM05D002291 ORTHO05D002496 9.3e-18 93.6 100 55.0
Hma1.2p1_0182F.1_g080570 Hydrangea macrophylla HOM05D002291 ORTHO05D002496 4.6e-17 91.3 99 55.6
Lsat_1_v5_gn_8_60440 Lactuca sativa HOM05D002291 ORTHO05D002496 7.9e-17 90.5 82 56.1
PGSC0003DMG400030741 Solanum tuberosum HOM05D002291 ORTHO05D002496 1.0e-16 90.1 95 53.7
PGSC0003DMG400030742 Solanum tuberosum HOM05D002291 ORTHO05D002496 1.0e-16 90.1 95 53.7
Migut.K00368 Erythranthe guttata HOM05D002291 ORTHO05D002496 1.3e-16 89.7 82 57.3
ECA236G2080 Erigeron canadensis HOM05D002291 ORTHO05D002496 2.3e-16 89.0 83 55.4
Solyc07g007050.1 Solanum lycopersicum HOM05D002291 ORTHO05D002496 3.9e-16 88.2 95 52.6
Migut.J01277 Erythranthe guttata HOM05D002291 ORTHO05D002496 6.7e-16 87.4 89 52.8
Sopen07g003120 Solanum pennellii HOM05D002291 ORTHO05D002496 1.1e-15 86.7 95 52.6
Nitab4.5_0001151g0070 Nicotiana tabacum HOM05D002291 ORTHO05D002496 2.5e-15 85.5 81 59.3
Thecc.09G142300 Theobroma cacao HOM05D002291 ORTHO05D002496 2.5e-15 85.5 84 54.8
Oeu061127.1 Olea europaea HOM05D002291 ORTHO05D002496 4.3e-15 84.7 83 55.4
Oeu040780.1 Olea europaea HOM05D002291 ORTHO05D002496 7.4e-15 84.0 100 49.0
Peaxi162Scf00177g00073 Petunia axillaris HOM05D002291 ORTHO05D002496 9.6e-15 83.6 85 55.3
CSS0043235 Camellia sinensis var. sinensis HOM05D002291 ORTHO05D002496 1.3e-14 83.2 99 48.5
Oeu038253.1 Olea europaea HOM05D002291 ORTHO05D002496 1.3e-14 83.2 95 52.6
Duzib187G0257 Durio zibethinus HOM05D002291 ORTHO05D002496 1.6e-14 82.8 84 53.6
Nitab4.5_0005330g0060 Nicotiana tabacum HOM05D002291 ORTHO05D002496 1.6e-14 82.8 84 56.0
CSS0042018 Camellia sinensis var. sinensis HOM05D002291 ORTHO05D002496 2.1e-14 82.4 99 48.5
Duzib150G1435 Durio zibethinus HOM05D002291 ORTHO05D002496 2.1e-14 82.4 83 53.0
Peaxi162Scf00347g00017 Petunia axillaris HOM05D002291 ORTHO05D002496 2.8e-14 82.0 91 52.7
COL.COLO4_24089 Corchorus olitorius HOM05D002291 ORTHO05D002496 3.7e-14 81.6 82 52.4
Oeu026098.1 Olea europaea HOM05D002291 ORTHO05D002496 3.7e-14 81.6 88 51.1
TWI34G1223 Tripterygium wilfordii HOM05D002291 ORTHO05D002496 4.8e-14 81.3 101 50.5
Nitab4.5_0001751g0020 Nicotiana tabacum HOM05D002291 ORTHO05D002496 6.2e-14 80.9 84 53.6
SalBow1G0319 Salvia bowleyana HOM05D002291 ORTHO05D002496 1.1e-13 80.1 72 52.8
CANSAT11G0551 Cannabis sativa HOM05D002291 ORTHO05D002496 1.4e-13 79.7 72 56.9
DCAR_020908 Daucus carota HOM05D002291 ORTHO05D002496 1.8e-13 79.3 69 59.4
Duzib168G2034 Durio zibethinus HOM05D002291 ORTHO05D002496 2.4e-13 79.0 84 53.6
Cpa.g.sc46.90 Carica papaya HOM05D002291 ORTHO05D002496 3.1e-13 78.6 74 54.1
MD15G1158600 Malus domestica HOM05D002291 ORTHO05D002496 3.1e-13 78.6 87 49.4
Prupe.7G253800 Prunus persica HOM05D002291 ORTHO05D002496 5.3e-13 77.8 70 55.7
Lalb_Chr13g0301181 Lupinus albus HOM05D002291 ORTHO05D002496 9.0e-13 77.0 71 53.5
Solyc12g010400.2 Solanum lycopersicum HOM05D002291 ORTHO05D002496 9.0e-13 77.0 88 52.3
Sopen12g005420 Solanum pennellii HOM05D002291 ORTHO05D002496 9.0e-13 77.0 88 52.3
MD02G1012800 Malus domestica HOM05D002291 ORTHO05D002496 1.5e-12 76.3 87 48.3
Potri.018G113700 Populus trichocarpa HOM05D002291 ORTHO05D002496 1.5e-12 76.3 89 51.7
Actinidia38701 Actinidia chinensis HOM05D002291 ORTHO05D002496 2.0e-12 75.9 74 58.1
DCAR_014930 Daucus carota HOM05D002291 ORTHO05D002496 2.6e-12 75.5 101 46.5
Lalb_Chr08g0233841 Lupinus albus HOM05D002291 ORTHO05D002496 2.6e-12 75.5 93 45.2
Manes.06G041100 Manihot esculenta HOM05D002291 ORTHO05D002496 2.6e-12 75.5 70 58.6
QL02p091382 Quercus lobata HOM05D002291 ORTHO05D002496 2.6e-12 75.5 93 51.6
DCAR_017763 Daucus carota HOM05D002291 ORTHO05D002496 3.4e-12 75.1 77 51.9
ATR0629G115 Amborella trichopoda HOM05D002291 ORTHO05D002496 5.8e-12 74.3 98 42.9
Lalb_Chr07g0179531 Lupinus albus HOM05D002291 ORTHO05D002496 5.8e-12 74.3 69 53.6
Manes.14G139400 Manihot esculenta HOM05D002291 ORTHO05D002496 5.8e-12 74.3 102 45.1
Glyma.13G157000 Glycine max HOM05D002291 ORTHO05D002496 7.6e-12 73.9 104 44.2
Gohir.A13G203400 Gossypium hirsutum HOM05D002291 ORTHO05D002496 1.0e-11 73.6 86 48.8
Potri.006G189600 Populus trichocarpa HOM05D002291 ORTHO05D002496 1.0e-11 73.6 87 51.7
Phvul.009G209300 Phaseolus vulgaris HOM05D002291 ORTHO05D002496 1.3e-11 73.2 85 48.2
Gohir.D13G208700 Gossypium hirsutum HOM05D002291 ORTHO05D002496 1.7e-11 72.8 86 48.8
Gorai.013G237800 Gossypium raimondii HOM05D002291 ORTHO05D002496 1.7e-11 72.8 86 48.8
Sabra18G0096600 Salix brachista HOM05D002291 ORTHO05D002496 1.7e-11 72.8 73 54.8
CAN.G518.9 Capsicum annuum HOM05D002291 ORTHO05D002496 2.2e-11 72.4 85 48.2
HanXRQChr03g0064541 Helianthus annuus HOM05D002291 ORTHO05D002496 2.2e-11 72.4 85 51.8
Atru.chr7.219 Acer truncatum HOM05D002291 ORTHO05D002496 2.9e-11 72.0 85 48.2
Lj5g0000889 Lotus japonicus HOM05D002291 ORTHO05D002496 2.9e-11 72.0 78 50.0
EL10Ac8g18812 Beta vulgaris HOM05D002291 ORTHO05D002496 3.8e-11 71.6 85 50.6
Cfa020885 Carpinus fangiana HOM05D002291 ORTHO05D002496 3.8e-11 71.6 80 50.0
unitig_748.g7183 Utricularia gibba HOM05D002291 ORTHO05D002496 3.8e-11 71.6 83 50.6
Aqoxy7G03977 Aquilegia oxysepala HOM05D002291 ORTHO05D002496 6.5e-11 70.9 103 45.6
AUR62011250 Chenopodium quinoa HOM05D002291 ORTHO05D002496 6.5e-11 70.9 75 50.7
PGSC0003DMG401007888 Solanum tuberosum HOM05D002291 ORTHO05D002496 6.5e-11 70.9 87 50.6
AUR62041454 Chenopodium quinoa HOM05D002291 ORTHO05D002496 8.4e-11 70.5 101 45.5
THA.LOC104815397 Tarenaya hassleriana HOM05D002291 ORTHO05D002496 1.1e-10 70.1 96 44.8
THA.LOC104826568 Tarenaya hassleriana HOM05D002291 ORTHO05D002496 1.1e-10 70.1 106 44.3
Gohir.A08G237300 Gossypium hirsutum HOM05D002291 ORTHO05D002496 1.4e-10 69.7 102 41.2
THA.LOC104808924 Tarenaya hassleriana HOM05D002291 ORTHO05D002496 1.9e-10 69.3 98 43.9
CsaV3_1G028530 Cucumis sativus L. HOM05D002291 ORTHO05D002496 2.5e-10 68.9 82 46.3
Lsat_1_v5_gn_7_47800 Lactuca sativa HOM05D002291 ORTHO05D002496 2.5e-10 68.9 96 49.0
Phvul.003G175100 Phaseolus vulgaris HOM05D002291 ORTHO05D002496 3.2e-10 68.6 71 50.7
Sabra06G0145800 Salix brachista HOM05D002291 ORTHO05D002496 3.2e-10 68.6 87 47.1
CARHR217180 Cardamine hirsuta HOM05D002291 ORTHO05D002496 4.2e-10 68.2 89 46.1
CiPaw.16G117500 Carya illinoinensis HOM05D002291 ORTHO05D002496 4.2e-10 68.2 72 51.4
Ca_13603_v3 Cicer arietinum L. HOM05D002291 ORTHO05D002496 4.2e-10 68.2 92 46.7
Ca_30444_v3 Cicer arietinum L. HOM05D002291 ORTHO05D002496 4.2e-10 68.2 92 46.7
Gorai.004G275000 Gossypium raimondii HOM05D002291 ORTHO05D002496 4.2e-10 68.2 102 41.2
Carub.0007s3090 Capsella rubella HOM05D002291 ORTHO05D002496 5.5e-10 67.8 85 48.2
MELO3C010261.2 Cucumis melo HOM05D002291 ORTHO05D002496 5.5e-10 67.8 71 50.7
Gohir.A06G049100 Gossypium hirsutum HOM05D002291 ORTHO05D002496 5.5e-10 67.8 85 51.8
CiPaw.15G181400 Carya illinoinensis HOM05D002291 ORTHO05D002496 7.1e-10 67.4 74 48.6
Lalb_Chr23g0275801 Lupinus albus HOM05D002291 ORTHO05D002496 7.1e-10 67.4 67 47.8
RcHm_v2.0_Chr2g0086561 Rosa chinensis HOM05D002291 ORTHO05D002496 7.1e-10 67.4 77 46.8
Sed0006817 Sechium edule HOM05D002291 ORTHO05D002496 9.3e-10 67.0 82 48.8
CiPaw.15G181200 Carya illinoinensis HOM05D002291 ORTHO05D002496 1.2e-09 66.6 93 44.1
Glyma.09G094900 Glycine max HOM05D002291 ORTHO05D002496 1.2e-09 66.6 115 40.0
Gohir.D08G257900 Gossypium hirsutum HOM05D002291 ORTHO05D002496 1.2e-09 66.6 94 40.4
Sc14g0000090 Simmondsia chinensis HOM05D002291 ORTHO05D002496 1.2e-09 66.6 82 46.3
Glyma.17G104600 Glycine max HOM05D002291 ORTHO05D002496 1.6e-09 66.2 104 43.3
Nn2g12256 Nelumbo nucifera HOM05D002291 ORTHO05D002496 1.6e-09 66.2 107 42.1
Prupe.7G254200 Prunus persica HOM05D002291 ORTHO05D002496 1.6e-09 66.2 86 41.9
VMungo1309G2977 Vigna mungo HOM05D002291 ORTHO05D002496 1.6e-09 66.2 85 44.7
Lalb_Chr11g0072841 Lupinus albus HOM05D002291 ORTHO05D002496 2.1e-09 65.9 88 44.3
Aqoxy6G02828 Aquilegia oxysepala HOM05D002291 ORTHO05D002496 2.7e-09 65.5 87 49.4
AT5G35110 Arabidopsis thaliana HOM05D002291 ORTHO05D002496 2.7e-09 65.5 87 46.0
ClCG06G012060 Citrullus lanatus HOM05D002291 ORTHO05D002496 2.7e-09 65.5 86 44.2
TAR626G1664 Trochodendron aralioides HOM05D002291 ORTHO05D002496 3.5e-09 65.1 64 54.7
Sp7g07240 Schrenkiella parvula HOM05D002291 ORTHO05D002496 4.6e-09 64.7 80 45.0
A03p25670 Brassica napus HOM05D002291 ORTHO05D002496 6.0e-09 64.3 83 42.2
BraA03t11782Z Brassica rapa HOM05D002291 ORTHO05D002496 6.0e-09 64.3 83 42.2
Gohir.D06G048800 Gossypium hirsutum HOM05D002291 ORTHO05D002496 6.0e-09 64.3 85 49.4
CARHR141790 Cardamine hirsuta HOM05D002291 ORTHO05D002496 7.9e-09 63.9 97 41.2
Glyma.15G202600 Glycine max HOM05D002291 ORTHO05D002496 7.9e-09 63.9 85 43.5
AL7G43990 Arabidopsis lyrata HOM05D002291 ORTHO05D002496 1.0e-08 63.5 87 44.8
Gorai.010G055000 Gossypium raimondii HOM05D002291 ORTHO05D002496 1.0e-08 63.5 85 49.4
BcaC07g37675 Brassica carinata HOM05D002291 ORTHO05D002496 1.3e-08 63.2 80 45.0
BolC8t48047H Brassica oleracea HOM05D002291 ORTHO05D002496 1.3e-08 63.2 80 45.0
Ciclev10009990m.g Citrus clementina HOM05D002291 ORTHO05D002496 1.3e-08 63.2 103 38.8
Sed0005811 Sechium edule HOM05D002291 ORTHO05D002496 1.3e-08 63.2 84 42.9
ClCG02G017270 Citrullus lanatus HOM05D002291 ORTHO05D002496 1.8e-08 62.8 73 49.3
FvH4_1g01620 Fragaria vesca HOM05D002291 ORTHO05D002496 1.8e-08 62.8 101 37.6
Prupe.7G254000 Prunus persica HOM05D002291 ORTHO05D002496 1.8e-08 62.8 97 40.2
Aqoxy6G00792 Aquilegia oxysepala HOM05D002291 ORTHO05D002496 2.3e-08 62.4 53 54.7
BcaB01g03214 Brassica carinata HOM05D002291 ORTHO05D002496 2.3e-08 62.4 82 39.0
BcaB04g18061 Brassica carinata HOM05D002291 ORTHO05D002496 2.3e-08 62.4 80 45.0
FAN19G2591 Fragaria x ananassa HOM05D002291 ORTHO05D002496 2.3e-08 62.4 101 37.6
Sed0001206 Sechium edule HOM05D002291 ORTHO05D002496 2.3e-08 62.4 87 48.3
Thhalv10005650m.g Eutrema salsugineum HOM05D002291 ORTHO05D002496 3.0e-08 62.0 92 42.4
FAN28G2341 Fragaria x ananassa HOM05D000118 ORTHO05D000098 3.0e-08 62.0 94 40.4
PGR142G0643 Punica granatum HOM05D002291 ORTHO05D002496 3.0e-08 62.0 75 49.3
Aqoxy7G03523 Aquilegia oxysepala HOM05D002291 ORTHO05D002496 3.9e-08 61.6 83 45.8
AL4G45830 Arabidopsis lyrata HOM05D002291 ORTHO05D002496 3.9e-08 61.6 94 38.3
AL4G45850 Arabidopsis lyrata HOM05D002291 ORTHO05D002496 3.9e-08 61.6 94 38.3
AL4G45870 Arabidopsis lyrata HOM05D002291 ORTHO05D002496 3.9e-08 61.6 94 38.3
AL4G45890 Arabidopsis lyrata HOM05D002291 ORTHO05D002496 3.9e-08 61.6 94 38.3
AT2G46490 Arabidopsis thaliana HOM05D002291 ORTHO05D002496 3.9e-08 61.6 94 38.3
A08p09600 Brassica napus HOM05D002291 ORTHO05D002496 3.9e-08 61.6 80 43.8
BraA08t32957Z Brassica rapa HOM05D002291 ORTHO05D002496 3.9e-08 61.6 80 43.8
Carub.0004s2917 Capsella rubella HOM05D002291 ORTHO05D002496 3.9e-08 61.6 94 39.4
FAN23G1691 Fragaria x ananassa HOM05D002291 ORTHO05D002496 3.9e-08 61.6 94 40.4
MBI15_g31410_MAGBIO Magnolia biondii HOM05D002291 ORTHO05D002496 3.9e-08 61.6 72 48.6
Prupe.1G525100 Prunus persica HOM05D002291 ORTHO05D002496 3.9e-08 61.6 96 39.6
PGR102G1132 Punica granatum HOM05D002291 ORTHO05D002496 3.9e-08 61.6 87 46.0
MELO3C004444.2 Cucumis melo HOM05D002291 ORTHO05D002496 5.1e-08 61.2 96 42.7
FAN19G0716 Fragaria x ananassa HOM05D002291 ORTHO05D002496 5.1e-08 61.2 94 40.4
CsaV3_2G003530 Cucumis sativus L. HOM05D007046 ORTHO05D008788 6.7e-08 60.8 73 47.9
Prupe.7G254100 Prunus persica HOM05D002291 ORTHO05D002496 6.7e-08 60.8 86 39.5
MBI14_g15652_MAGBIO Magnolia biondii HOM05D002291 ORTHO05D002496 8.7e-08 60.5 63 52.4
FvH4_1g01610 Fragaria vesca HOM05D002291 ORTHO05D002496 1.1e-07 60.1 95 38.9
FAN26G1319 Fragaria x ananassa HOM05D002291 ORTHO05D002496 1.1e-07 60.1 92 40.2
Haze_19315 Corylus avellana HOM05D002291 ORTHO05D002496 1.5e-07 59.7 60 46.7
Prupe.7G254300 Prunus persica HOM05D002291 ORTHO05D002496 1.9e-07 59.3 66 43.9
RcHm_v2.0_Chr2g0086601 Rosa chinensis HOM05D002291 ORTHO05D002496 1.9e-07 59.3 97 38.1
Sp4g28490 Schrenkiella parvula HOM05D002291 ORTHO05D002496 1.9e-07 59.3 89 39.3
BcaC02g12525 Brassica carinata HOM05D002291 ORTHO05D002496 2.5e-07 58.9 84 38.1
BcaNung05602 Brassica carinata HOM05D002291 ORTHO05D002496 2.5e-07 58.9 96 37.5
A05p01310 Brassica napus HOM05D002291 ORTHO05D002496 2.5e-07 58.9 84 38.1
BolC4t21798H Brassica oleracea HOM05D002291 ORTHO05D002496 2.5e-07 58.9 84 38.1
BraA05t19129Z Brassica rapa HOM05D002291 ORTHO05D002496 2.5e-07 58.9 84 38.1
Migut.K00374 Erythranthe guttata HOM05D002291 ORTHO05D002496 2.5e-07 58.9 91 44.0
PSO832G3277 Papaver somniferum HOM05D002291 ORTHO05D002496 2.5e-07 58.9 70 44.3
C03p30620 Brassica napus HOM05D002291 ORTHO05D002496 3.3e-07 58.5 86 38.4
FvH4_1g01640 Fragaria vesca HOM05D002291 ORTHO05D002496 3.3e-07 58.5 103 35.9
FAN28G2256 Fragaria x ananassa HOM05D002291 ORTHO05D002496 3.3e-07 58.5 97 37.1
RcHm_v2.0_Chr2g0086581 Rosa chinensis HOM05D002291 ORTHO05D002496 3.3e-07 58.5 101 35.6
Potri.018G113901 Populus trichocarpa HOM05D002291 ORTHO05D002496 4.3e-07 58.2 65 47.7
Prupe.7G254400 Prunus persica HOM05D002291 ORTHO05D002496 4.3e-07 58.2 86 38.4
C04p01440 Brassica napus HOM05D002291 ORTHO05D002496 5.7e-07 57.8 84 36.9
FAN26G0066 Fragaria x ananassa HOM05D002291 ORTHO05D002496 7.4e-07 57.4 92 40.2
FAN28G1283 Fragaria x ananassa HOM05D002291 ORTHO05D002496 7.4e-07 57.4 90 36.7
BcaC01g05064 Brassica carinata HOM05D002291 ORTHO05D002496 9.6e-07 57.0 71 38.0
Sed0002205 Sechium edule HOM05D002291 ORTHO05D002496 9.6e-07 57.0 78 41.0
Haze_18941 Corylus avellana HOM05D002291 ORTHO05D002496 1.3e-06 56.6 80 41.2
FAN19G2875 Fragaria x ananassa HOM05D002291 ORTHO05D002496 1.3e-06 56.6 105 36.2
Nn8g39724 Nelumbo nucifera HOM05D002291 ORTHO05D002496 1.6e-06 56.2 71 45.1
BcaC01g05065 Brassica carinata HOM05D002291 ORTHO05D002496 2.1e-06 55.8 87 37.9
BolC3t15412H Brassica oleracea HOM05D002291 ORTHO05D002496 2.1e-06 55.8 87 37.9
FvH4_1g01630 Fragaria vesca HOM05D002291 ORTHO05D002496 2.1e-06 55.8 70 42.9
Nn2g12255 Nelumbo nucifera HOM05D002291 ORTHO05D002496 2.1e-06 55.8 98 40.8
Aqoxy7G03526 Aquilegia oxysepala HOM05D002291 ORTHO05D002496 2.8e-06 55.5 72 43.1
MD15G1159200 Malus domestica HOM05D002291 ORTHO05D002496 2.8e-06 55.5 92 35.9
RcHm_v2.0_Chr2g0086491 Rosa chinensis HOM05D002291 ORTHO05D002496 3.7e-06 55.1 89 37.1
FvH4_1g01670 Fragaria vesca HOM05D002291 ORTHO05D002496 6.2e-06 54.3 96 36.5
Migut.K00370 Erythranthe guttata HOM05D002291 ORTHO05D002496 8.2e-06 53.9 99 41.4


User provided reference genes

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