Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0064531 Helianthus annuus HOM05D005730 ORTHO05D007038 4.5e-38 160.6 73 100.0
HanXRQChr09g0243241 Helianthus annuus HOM05D005730 ORTHO05D007038 4.5e-38 160.6 73 100.0
Lsat_1_v5_gn_7_59680 Lactuca sativa HOM05D005730 ORTHO05D007038 1.3e-37 159.1 73 95.9
ECA240G4690 Erigeron canadensis HOM05D005730 ORTHO05D007038 2.5e-36 154.8 73 94.5
Phvul.004G177400 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 8.8e-34 146.4 71 90.1
Glyma.07G130200 Glycine max HOM05D005730 ORTHO05D007038 9.7e-33 142.9 71 88.7
Gohir.D03G138800 Gossypium hirsutum HOM05D005730 ORTHO05D007038 9.7e-33 142.9 71 87.3
Gorai.003G145600 Gossypium raimondii HOM05D005730 ORTHO05D007038 9.7e-33 142.9 71 87.3
TPR.G21357 Trifolium pratense HOM05D005730 ORTHO05D007038 9.7e-33 142.9 73 84.9
VMungo0464G0384 Vigna mungo HOM05D002151 ORTHO05D002142 9.7e-33 142.9 71 88.7
Gohir.A03G029700 Gossypium hirsutum HOM05D005730 ORTHO05D007038 1.7e-32 142.1 71 87.3
Phvul.010G060700 Phaseolus vulgaris HOM05D005730 ORTHO05D007038 4.8e-32 140.6 71 87.3
QL11p009271 Quercus lobata HOM05D005730 ORTHO05D007038 4.8e-32 140.6 71 85.9
Eucgr.D02622 Eucalyptus grandis HOM05D005730 ORTHO05D007038 6.3e-32 140.2 71 87.3
Cfa020734 Carpinus fangiana HOM05D005730 ORTHO05D007038 1.4e-31 139.0 71 83.1
MD16G1239700 Malus domestica HOM05D005730 ORTHO05D007038 1.4e-31 139.0 71 84.5
Psat1g051120 Pisum sativum HOM05D005730 ORTHO05D007038 1.4e-31 139.0 73 82.2
PGR142G0999 Punica granatum HOM05D005730 ORTHO05D007038 1.8e-31 138.7 71 85.9
Prupe.1G065800 Prunus persica HOM05D005730 ORTHO05D007038 2.4e-31 138.3 71 84.5
FvH4_4g06270 Fragaria vesca HOM05D005730 ORTHO05D007038 3.1e-31 137.9 71 83.1
FAN12G2290 Fragaria x ananassa HOM05D005730 ORTHO05D007038 3.1e-31 137.9 71 83.1
RcHm_v2.0_Chr4g0397991 Rosa chinensis HOM05D005730 ORTHO05D007038 3.1e-31 137.9 71 83.1
CiPaw.16G103100 Carya illinoinensis HOM05D005730 ORTHO05D007038 5.3e-31 137.1 71 85.9
Cc00_g00480 Coffea canephora HOM05D005730 ORTHO05D007038 5.3e-31 137.1 71 84.5
CsaV3_1G004610 Cucumis sativus L. HOM05D005730 ORTHO05D007038 5.3e-31 137.1 70 87.1
MD13G1234900 Malus domestica HOM05D005730 ORTHO05D007038 7.0e-31 136.7 71 83.1
THA.LOC104815318 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 7.0e-31 136.7 71 83.1
THA.LOC109116496 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 7.0e-31 136.7 71 83.1
THA.LOC109117265 Tarenaya hassleriana HOM05D005730 ORTHO05D007038 7.0e-31 136.7 71 83.1
Thecc.06G194900 Theobroma cacao HOM05D005730 ORTHO05D007038 7.0e-31 136.7 71 83.1
MELO3C017388.2 Cucumis melo HOM05D005730 ORTHO05D007038 9.1e-31 136.3 70 85.7
Aqoxy7G02690 Aquilegia oxysepala HOM05D005730 ORTHO05D007038 1.2e-30 136.0 71 80.3
CANSAT01G0847 Cannabis sativa HOM05D005730 ORTHO05D007038 1.2e-30 136.0 71 80.3
Atru.chr10.916 Acer truncatum HOM05D005730 ORTHO05D007038 2.0e-30 135.2 71 80.3
Atru.chr10.931 Acer truncatum HOM05D005730 ORTHO05D007038 2.0e-30 135.2 71 80.3
Actinidia38519 Actinidia chinensis HOM05D005730 ORTHO05D007038 2.0e-30 135.2 71 78.9
Ciclev10010105m.g Citrus clementina HOM05D005730 ORTHO05D007038 2.0e-30 135.2 71 78.9
ClCG06G014030 Citrullus lanatus HOM05D005730 ORTHO05D007038 2.7e-30 134.8 69 85.5
Duzib170G0040 Durio zibethinus HOM05D005730 ORTHO05D007038 4.5e-30 134.0 71 83.1
Duzib177G0654 Durio zibethinus HOM05D005730 ORTHO05D007038 4.5e-30 134.0 71 80.3
Thhalv10017500m.g Eutrema salsugineum HOM05D005730 ORTHO05D007038 4.5e-30 134.0 71 78.9
Sp4g13950 Schrenkiella parvula HOM05D005730 ORTHO05D007038 4.5e-30 134.0 71 78.9
Lalb_Chr14g0361711 Lupinus albus HOM05D005730 ORTHO05D007038 5.9e-30 133.7 71 81.7
AL4G26750 Arabidopsis lyrata HOM05D005730 ORTHO05D007038 7.7e-30 133.3 71 77.5
AT2G31490 Arabidopsis thaliana HOM05D005730 ORTHO05D007038 7.7e-30 133.3 71 77.5
BcaC02g07993 Brassica carinata HOM05D005730 ORTHO05D007038 7.7e-30 133.3 71 77.5
A03p17640 Brassica napus HOM05D005730 ORTHO05D007038 7.7e-30 133.3 71 77.5
A04p24230 Brassica napus HOM05D005730 ORTHO05D007038 7.7e-30 133.3 71 77.5
C03p20730 Brassica napus HOM05D005730 ORTHO05D007038 7.7e-30 133.3 71 77.5
BolC3t14450H Brassica oleracea HOM05D005730 ORTHO05D007038 7.7e-30 133.3 71 77.5
BolC4t23397H Brassica oleracea HOM05D005730 ORTHO05D007038 7.7e-30 133.3 71 77.5
BolC4t27587H Brassica oleracea HOM05D005730 ORTHO05D007038 7.7e-30 133.3 71 77.5
BraA03t11029Z Brassica rapa HOM05D005730 ORTHO05D007038 7.7e-30 133.3 71 77.5
Carub.0004s1281 Capsella rubella HOM05D005730 ORTHO05D007038 7.7e-30 133.3 71 77.5
CARHR125130 Cardamine hirsuta HOM05D005730 ORTHO05D007038 7.7e-30 133.3 71 77.5
arahy.Tifrunner.gnm1.ann1.YLZA1F Arachis hypogaea HOM05D005730 ORTHO05D007038 1.3e-29 132.5 71 81.7
RcHm_v2.0_Chr6g0293611 Rosa chinensis HOM05D005730 ORTHO05D007038 1.3e-29 132.5 71 78.9
Ah.10g033660 Amaranthus hybridus HOM05D005730 ORTHO05D007038 1.7e-29 132.1 71 76.1
Lj2g0002952 Lotus japonicus HOM05D005730 ORTHO05D007038 1.7e-29 132.1 71 81.7
arahy.Tifrunner.gnm1.ann1.8U1ME7 Arachis hypogaea HOM05D005730 ORTHO05D007038 2.2e-29 131.7 71 81.7
Aa31LG5G7440 Aethionema arabicum HOM05D005730 ORTHO05D007038 5.0e-29 130.6 71 74.6
Manes.11G087000 Manihot esculenta HOM05D005730 ORTHO05D007038 6.5e-29 130.2 71 76.1
Sc09g0007480 Simmondsia chinensis HOM05D005730 ORTHO05D007038 6.5e-29 130.2 71 77.5
Dinv06659 Davidia involucrata HOM05D005730 ORTHO05D007038 8.5e-29 129.8 71 76.1
Potri.006G077400 Populus trichocarpa HOM05D005730 ORTHO05D007038 1.1e-28 129.4 71 76.1
TAR383G0493 Trochodendron aralioides HOM05D005730 ORTHO05D007038 1.5e-28 129.0 71 74.6
GSVIVG01029731001 Vitis vinifera HOM05D005730 ORTHO05D007038 1.5e-28 129.0 71 77.5
CSS0014288 Camellia sinensis var. sinensis HOM05D005730 ORTHO05D007038 1.9e-28 128.6 71 77.5
Nn2g12785 Nelumbo nucifera HOM05D005730 ORTHO05D007038 2.5e-28 128.3 71 77.5
Manes.04G088600 Manihot esculenta HOM05D005730 ORTHO05D007038 7.2e-28 126.7 71 73.2
SGA_v2.0_scaffold143G35734 Striga asiatica HOM05D005730 ORTHO05D007038 7.2e-28 126.7 70 78.6
Sed0021240 Sechium edule HOM05D005730 ORTHO05D007038 9.4e-28 126.3 69 79.7
BcaB01g04043 Brassica carinata HOM05D005730 ORTHO05D007038 1.6e-27 125.6 67 77.6
BcaB02g10394 Brassica carinata HOM05D005730 ORTHO05D007038 1.6e-27 125.6 67 77.6
BcaB06g28537 Brassica carinata HOM05D005730 ORTHO05D007038 2.7e-27 124.8 67 76.1
Os01g0750800 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 2.7e-27 124.8 71 76.1
Zm00001eb368480 Zea mays HOM05D005730 ORTHO05D007038 6.1e-27 123.6 71 74.6
CDE06G0649 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 8.0e-27 123.2 71 77.5
Nitab4.5_0004188g0020 Nicotiana tabacum HOM05D005730 ORTHO05D007038 8.0e-27 123.2 73 71.2
Migut.L00209 Erythranthe guttata HOM05D005730 ORTHO05D007038 2.3e-26 121.7 70 72.9
unitig_26.g9132 Utricularia gibba HOM05D005730 ORTHO05D007038 2.3e-26 121.7 70 74.3
Sopen05g027690 Solanum pennellii HOM05D005730 ORTHO05D007038 3.0e-26 121.3 73 74.0
Migut.J00829 Erythranthe guttata HOM05D005730 ORTHO05D007038 4.0e-26 120.9 70 72.9
FAN07G1689 Fragaria x ananassa HOM05D005730 ORTHO05D007038 6.8e-26 120.2 106 55.7
FAN22G1024 Fragaria x ananassa HOM05D005730 ORTHO05D007038 6.8e-26 120.2 106 55.7
Os01g0732100 Oryza sativa ssp. japonica HOM05D005730 ORTHO05D007038 8.8e-26 119.8 71 73.2
RcHm_v2.0_Chr6g0293601 Rosa chinensis HOM05D005730 ORTHO05D007038 8.8e-26 119.8 67 76.1
PSO063G5181 Papaver somniferum HOM05D005730 ORTHO05D007038 1.5e-25 119.0 70 71.4
TWI63G0907 Tripterygium wilfordii HOM05D005730 ORTHO05D007038 1.5e-25 119.0 70 70.0
PSO170G3580 Papaver somniferum HOM05D005730 ORTHO05D007038 2.0e-25 118.6 70 71.4
vmacro20778 Vaccinium macrocarpon HOM05D005730 ORTHO05D007038 7.5e-25 116.7 68 75.0
HPP92_021358 Vanilla planifolia HOM05D005730 ORTHO05D007038 7.5e-25 116.7 71 74.6
HanXRQChr13g0388231 Helianthus annuus HOM05D005730 ORTHO05D007038 2.8e-24 114.8 56 94.6
Peaxi162Scf00320g00055 Petunia axillaris HOM05D005730 ORTHO05D007038 4.1e-23 110.9 61 77.0
Zm00001eb370910 Zea mays HOM05D005730 ORTHO05D007038 4.1e-23 110.9 71 70.4
COL.COLO4_33448 Corchorus olitorius HOM05D005730 ORTHO05D007038 9.1e-23 109.8 56 83.9
FAN17G1913 Fragaria x ananassa HOM05D005730 ORTHO05D007038 1.2e-22 109.4 57 80.7
FAN17G0140 Fragaria x ananassa HOM05D005730 ORTHO05D007038 1.6e-22 109.0 56 82.1
Cpa.g.sc115.33 Carica papaya HOM05D005730 ORTHO05D007038 2.7e-22 108.2 59 78.0
Ca_25629_v3 Cicer arietinum L. HOM05D005730 ORTHO05D007038 2.7e-22 108.2 57 80.7
SHI37948 Sapria himalayana HOM05D005730 ORTHO05D007038 2.7e-22 108.2 67 68.7
BraA05t20340Z Brassica rapa HOM05D000059 ORTHO05D000528 4.5e-22 107.5 56 78.6
AUR62020709 Chenopodium quinoa HOM05D005730 ORTHO05D007038 4.5e-22 107.5 56 80.4
AUR62028015 Chenopodium quinoa HOM05D005730 ORTHO05D007038 4.5e-22 107.5 56 80.4
Peaxi162Scf00204g00039 Petunia axillaris HOM05D005730 ORTHO05D007038 4.5e-22 107.5 71 64.8
BcaC02g11258 Brassica carinata HOM05D005730 ORTHO05D007038 1.0e-21 106.3 56 76.8
A05p14120 Brassica napus HOM05D005730 ORTHO05D007038 1.0e-21 106.3 56 78.6
C04p60960 Brassica napus HOM05D005730 ORTHO05D007038 1.0e-21 106.3 56 76.8
BraA04t17942Z Brassica rapa HOM05D000059 ORTHO05D000528 1.0e-21 106.3 56 76.8
DCAR_019791 Daucus carota HOM05D005730 ORTHO05D007038 1.0e-21 106.3 56 80.4
Medtr6g093010 Medicago truncatula HOM05D005730 ORTHO05D007038 1.0e-21 106.3 56 80.4
Sabra06G0058600 Salix brachista HOM05D005730 ORTHO05D007038 1.3e-21 105.9 114 46.5
Hund03236 Selenicereus undatus HOM05D005730 ORTHO05D007038 1.3e-21 105.9 56 80.4
EL10Ac2g03641 Beta vulgaris HOM05D005730 ORTHO05D007038 1.7e-21 105.5 56 78.6
FAN11G1086 Fragaria x ananassa HOM05D005730 ORTHO05D007038 1.7e-21 105.5 56 80.4
Nitab4.5_0000413g0090 Nicotiana tabacum HOM05D005730 ORTHO05D007038 2.3e-21 105.1 56 78.6
Nitab4.5_0005014g0020 Nicotiana tabacum HOM05D001912 ORTHO05D001975 2.3e-21 105.1 56 78.6
TAR626G1073 Trochodendron aralioides HOM05D005730 ORTHO05D007038 3.8e-21 104.4 56 78.6
Solyc05g046390.3 Solanum lycopersicum HOM05D005730 ORTHO05D007038 1.1e-20 102.8 56 82.1
Peaxi162Scf00906g00224 Petunia axillaris HOM05D005730 ORTHO05D007038 1.5e-20 102.4 56 76.8
PGSC0003DMG400013688 Solanum tuberosum HOM05D000482 ORTHO05D000349 5.5e-20 100.5 56 78.6
Pp3c25_300 Physcomitrium patens HOM05D005730 ORTHO05D007038 2.8e-19 98.2 71 62.0
Hma1.2p1_0314F.1_g121950 Hydrangea macrophylla HOM05D005730 ORTHO05D007038 4.7e-19 97.4 52 75.0
SEGI_08291 Sequoiadendron giganteum HOM05D005730 ORTHO05D007038 4.7e-19 97.4 56 71.4
ATR0568G059 Amborella trichopoda HOM05D005730 ORTHO05D007038 1.0e-18 96.3 56 75.0
SalBow6G6230 Salvia bowleyana HOM05D005730 ORTHO05D007038 1.8e-18 95.5 52 78.8
Pp3c16_220 Physcomitrium patens HOM05D005730 ORTHO05D007038 4.0e-18 94.4 71 59.2
FAN28G2060 Fragaria x ananassa HOM05D002523 ORTHO05D002951 5.2e-18 94.0 49 79.6
Migut.L00210 Erythranthe guttata HOM05D005730 ORTHO05D007038 6.8e-18 93.6 55 70.9
Lj5A722T6 Lonicera japonica HOM05D005730 ORTHO05D007038 7.5e-17 90.1 46 82.6
Solyc09g059220.1 Solanum lycopersicum HOM05D005730 ORTHO05D007038 5.4e-15 84.0 69 50.7
MELO3C019212.2 Cucumis melo HOM05D005730 ORTHO05D007038 7.0e-15 83.6 56 67.9
Migut.K01179 Erythranthe guttata HOM05D005730 ORTHO05D007038 1.7e-13 79.0 49 67.3
CBR_g40455 Chara braunii HOM05D005730 ORTHO05D007038 1.1e-12 76.3 67 49.3
CDE02G1938 Ceratophyllum demersum HOM05D005730 ORTHO05D007038 1.9e-12 75.5 41 82.9
Mapoly0005s0214 Marchantia polymorpha HOM05D005730 ORTHO05D007038 2.8e-11 71.6 71 43.7
MCO07G159 Micromonas commoda HOM05D005730 ORTHO05D007038 6.1e-11 70.5 65 46.2
SMO141G0046 Selaginella moellendorffii HOM05D005730 ORTHO05D007038 5.2e-10 67.4 71 42.3
Mapoly0005s0215 Marchantia polymorpha HOM05D005730 ORTHO05D007038 2.0e-09 65.5 56 48.2
SHI03111 Sapria himalayana HOM05D005730 ORTHO05D007038 2.0e-09 65.5 50 60.0
Medtr8g107150 Medicago truncatula HOM05D005730 ORTHO05D007038 6.0e-06 53.9 32 71.9


User provided reference genes

Program Settings