Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0064341 Helianthus annuus HOM05D003696 ORTHO05D020192 7.4e-28 126.3 57 100.0
ECA248G0710 Erigeron canadensis HOM05D003696 ORTHO05D005158 5.1e-13 77.0 33 97.0
HanXRQChr01g0006891 Helianthus annuus HOM05D003696 ORTHO05D005158 5.1e-13 77.0 33 97.0
HanXRQChr06g0177911 Helianthus annuus HOM05D003696 ORTHO05D005158 6.7e-13 76.6 33 93.9
COL.COLO4_06092 Corchorus olitorius HOM05D003696 ORTHO05D005158 5.7e-12 73.6 37 86.5
TAR365G0099 Trochodendron aralioides HOM05D003696 ORTHO05D005158 1.3e-11 72.4 48 68.8
Cc01_g18910 Coffea canephora HOM05D003696 ORTHO05D005158 2.2e-11 71.6 33 90.9
Eucgr.B01485 Eucalyptus grandis HOM05D003696 ORTHO05D005158 3.7e-11 70.9 33 87.9
Nitab4.5_0004899g0140 Nicotiana tabacum HOM05D003696 ORTHO05D005158 3.7e-11 70.9 33 87.9
PGR119G0829 Punica granatum HOM05D003696 ORTHO05D005158 3.7e-11 70.9 33 87.9
Solyc06g084080.4 Solanum lycopersicum HOM05D003696 ORTHO05D005158 3.7e-11 70.9 33 87.9
PGSC0003DMG400020060 Solanum tuberosum HOM05D003696 ORTHO05D005158 3.7e-11 70.9 33 87.9
Duzib138G0212 Durio zibethinus HOM05D003696 ORTHO05D005158 4.8e-11 70.5 33 90.9
Migut.D00342 Erythranthe guttata HOM05D003696 ORTHO05D005158 4.8e-11 70.5 33 84.8
FAN20G1369 Fragaria x ananassa HOM05D003696 ORTHO05D005158 4.8e-11 70.5 33 90.9
Gohir.A11G126500 Gossypium hirsutum HOM05D003696 ORTHO05D005158 4.8e-11 70.5 33 87.9
Gohir.D11G132000 Gossypium hirsutum HOM05D003696 ORTHO05D005158 4.8e-11 70.5 33 87.9
Gorai.007G141200 Gossypium raimondii HOM05D003696 ORTHO05D005158 4.8e-11 70.5 33 87.9
Lj2C1161G6 Lonicera japonica HOM05D003696 ORTHO05D005158 4.8e-11 70.5 33 90.9
Potri.002G046000 Populus trichocarpa HOM05D003696 ORTHO05D005158 4.8e-11 70.5 33 90.9
Rhsim13G0030400 Rhododendron simsii HOM05D003696 ORTHO05D005158 4.8e-11 70.5 33 90.9
RcHm_v2.0_Chr6g0289661 Rosa chinensis HOM05D003696 ORTHO05D005158 4.8e-11 70.5 33 90.9
Sabra02G0037000 Salix brachista HOM05D003696 ORTHO05D005158 4.8e-11 70.5 33 90.9
GSVIVG01000711001 Vitis vinifera HOM05D003696 ORTHO05D005158 4.8e-11 70.5 33 90.9
arahy.Tifrunner.gnm1.ann1.PHA4NK Arachis hypogaea HOM05D003696 ORTHO05D005158 6.3e-11 70.1 33 87.9
arahy.Tifrunner.gnm1.ann1.R5NTZZ Arachis hypogaea HOM05D003696 ORTHO05D005158 6.3e-11 70.1 33 87.9
Cpa.g.sc52.105 Carica papaya HOM05D003696 ORTHO05D020192 6.3e-11 70.1 33 87.9
FvH4_2g22730 Fragaria vesca HOM05D003696 ORTHO05D005158 6.3e-11 70.1 33 87.9
FAN15G1876 Fragaria x ananassa HOM05D003696 ORTHO05D005158 6.3e-11 70.1 33 87.9
FAN24G1113 Fragaria x ananassa HOM05D003696 ORTHO05D005158 6.3e-11 70.1 33 87.9
FAN27G2942 Fragaria x ananassa HOM05D003696 ORTHO05D005158 6.3e-11 70.1 33 87.9
Lsat_1_v5_gn_5_186821 Lactuca sativa HOM05D003696 ORTHO05D005158 6.3e-11 70.1 33 84.8
Lalb_Chr01g0019921 Lupinus albus HOM05D003696 ORTHO05D005158 6.3e-11 70.1 33 87.9
MD03G1255900 Malus domestica HOM05D003696 ORTHO05D005158 6.3e-11 70.1 33 87.9
Prupe.8G233000 Prunus persica HOM05D003696 ORTHO05D005158 6.3e-11 70.1 33 87.9
Thecc.01G268800 Theobroma cacao HOM05D003696 ORTHO05D005158 6.3e-11 70.1 33 90.9
Lalb_Chr06g0162701 Lupinus albus HOM05D003696 ORTHO05D005158 1.1e-10 69.3 33 87.9
Peaxi162Scf00049g02229 Petunia axillaris HOM05D003696 ORTHO05D005158 1.1e-10 69.3 33 87.9
Hund22719 Selenicereus undatus HOM05D003696 ORTHO05D005158 1.1e-10 69.3 33 84.8
Solyc09g065810.3 Solanum lycopersicum HOM05D003696 ORTHO05D005158 1.1e-10 69.3 33 87.9
Sopen06g035470 Solanum pennellii HOM05D003696 ORTHO05D005158 1.1e-10 69.3 33 84.8
Sopen09g027590 Solanum pennellii HOM05D003696 ORTHO05D005158 1.1e-10 69.3 33 87.9
CANSAT25G2047 Cannabis sativa HOM05D003696 ORTHO05D005158 1.4e-10 68.9 33 84.8
CiPaw.03G256800 Carya illinoinensis HOM05D003696 ORTHO05D005158 1.4e-10 68.9 33 87.9
Ciclev10019381m.g Citrus clementina HOM05D003696 ORTHO05D005158 1.4e-10 68.9 33 84.8
Duzib133G0262 Durio zibethinus HOM05D003696 ORTHO05D005158 1.4e-10 68.9 33 87.9
Lj5g0013019 Lotus japonicus HOM05D003696 ORTHO05D005158 1.4e-10 68.9 33 87.9
Manes.01G202600 Manihot esculenta HOM05D003696 ORTHO05D005158 1.4e-10 68.9 33 84.8
Nitab4.5_0000187g0140 Nicotiana tabacum HOM05D003696 ORTHO05D005158 1.4e-10 68.9 33 87.9
Nitab4.5_0003053g0040 Nicotiana tabacum HOM05D003696 ORTHO05D005158 1.4e-10 68.9 33 87.9
Oeu011521.4 Olea europaea HOM05D003696 ORTHO05D005158 1.4e-10 68.9 33 87.9
QL12p042578 Quercus lobata HOM05D003696 ORTHO05D005158 1.4e-10 68.9 33 87.9
THA.LOC104804694 Tarenaya hassleriana HOM05D003696 ORTHO05D005158 1.4e-10 68.9 33 84.8
CSS0026583 Camellia sinensis var. sinensis HOM05D003696 ORTHO05D005158 1.8e-10 68.6 33 87.9
CAN.G1488.3 Capsicum annuum HOM05D003696 ORTHO05D005158 1.8e-10 68.6 33 87.9
Manes.05G083700 Manihot esculenta HOM05D003696 ORTHO05D005158 1.8e-10 68.6 33 87.9
Potri.005G217300 Populus trichocarpa HOM05D003696 ORTHO05D005158 1.8e-10 68.6 33 87.9
SalBow4G1850 Salvia bowleyana HOM05D003696 ORTHO05D005158 1.8e-10 68.6 33 81.8
THA.LOC104824177 Tarenaya hassleriana HOM05D003696 ORTHO05D005158 1.8e-10 68.6 33 81.8
TWI18G1352 Tripterygium wilfordii HOM05D003696 ORTHO05D005158 1.8e-10 68.6 33 87.9
Dinv22488 Davidia involucrata HOM05D003696 ORTHO05D005158 2.4e-10 68.2 33 87.9
Glyma.02G143000 Glycine max HOM05D003696 ORTHO05D005158 2.4e-10 68.2 33 84.8
Glyma.10G031400 Glycine max HOM05D003696 ORTHO05D005158 2.4e-10 68.2 33 84.8
arahy.Tifrunner.gnm1.ann1.RW1UC5 Arachis hypogaea HOM05D003696 ORTHO05D005158 3.1e-10 67.8 33 87.9
arahy.Tifrunner.gnm1.ann1.YF2GLB Arachis hypogaea HOM05D003696 ORTHO05D005158 3.1e-10 67.8 33 87.9
Lj1g0000304 Lotus japonicus HOM05D003696 ORTHO05D005158 3.1e-10 67.8 33 84.8
PSO210G6865 Papaver somniferum HOM05D003696 ORTHO05D005158 3.1e-10 67.8 33 81.8
PSO832G3077 Papaver somniferum HOM05D003696 ORTHO05D005158 3.1e-10 67.8 33 81.8
Phvul.007G176200 Phaseolus vulgaris HOM05D003696 ORTHO05D005158 3.1e-10 67.8 33 81.8
TPR.G19113 Trifolium pratense HOM05D003696 ORTHO05D005158 3.1e-10 67.8 33 84.8
VMungo0720G2873 Vigna mungo HOM05D003696 ORTHO05D005158 3.1e-10 67.8 33 81.8
Ca_08640_v3 Cicer arietinum L. HOM05D003696 ORTHO05D005158 4.1e-10 67.4 33 81.8
Medtr7g096020 Medicago truncatula HOM05D003696 ORTHO05D005158 4.1e-10 67.4 33 81.8
Psat3g060760 Pisum sativum HOM05D003696 ORTHO05D005158 4.1e-10 67.4 33 81.8
TWI75G1072 Tripterygium wilfordii HOM05D003696 ORTHO05D005158 4.1e-10 67.4 33 84.8
unitig_22.g5276 Utricularia gibba HOM05D003696 ORTHO05D005158 4.1e-10 67.4 33 78.8
vmacro02623 Vaccinium macrocarpon HOM05D003696 ORTHO05D005158 4.1e-10 67.4 33 84.8
Aqoxy2G03500 Aquilegia oxysepala HOM05D003696 ORTHO05D005158 5.3e-10 67.0 33 84.8
MSTRG.18280 Avicennia marina HOM05D003696 ORTHO05D005158 5.3e-10 67.0 33 81.8
Nn1g02525 Nelumbo nucifera HOM05D003696 ORTHO05D005158 5.3e-10 67.0 33 81.8
Atru.chr5.1552 Acer truncatum HOM05D003696 ORTHO05D005158 6.9e-10 66.6 33 78.8
Actinidia04660 Actinidia chinensis HOM05D003696 ORTHO05D005158 6.9e-10 66.6 33 84.8
Actinidia21150 Actinidia chinensis HOM05D003696 ORTHO05D005158 6.9e-10 66.6 33 84.8
CDE07G1976 Ceratophyllum demersum HOM05D003696 ORTHO05D005158 6.9e-10 66.6 33 81.8
Gohir.A07G208500 Gossypium hirsutum HOM05D003696 ORTHO05D005158 6.9e-10 66.6 33 81.8
Gohir.D07G214400 Gossypium hirsutum HOM05D003696 ORTHO05D005158 6.9e-10 66.6 33 81.8
Gorai.001G242400 Gossypium raimondii HOM05D003696 ORTHO05D005158 6.9e-10 66.6 33 81.8
Hma1.2p1_0760F.1_g214220 Hydrangea macrophylla HOM05D003696 ORTHO05D005158 6.9e-10 66.6 33 84.8
SEGI_18155 Sequoiadendron giganteum HOM05D003696 ORTHO05D005158 6.9e-10 66.6 33 78.8
Aa31LG5G20830 Aethionema arabicum HOM05D003696 ORTHO05D005158 9.1e-10 66.2 33 78.8
BcaB01g03621 Brassica carinata HOM05D003696 ORTHO05D005158 9.1e-10 66.2 33 78.8
BcaC01g05515 Brassica carinata HOM05D003696 ORTHO05D005158 9.1e-10 66.2 33 78.8
A03p21680 Brassica napus HOM05D003696 ORTHO05D005158 9.1e-10 66.2 33 78.8
C03p25680 Brassica napus HOM05D003696 ORTHO05D005158 9.1e-10 66.2 33 78.8
BolC3t14954H Brassica oleracea HOM05D003696 ORTHO05D005158 9.1e-10 66.2 33 78.8
BraA03t11403Z Brassica rapa HOM05D003696 ORTHO05D005158 9.1e-10 66.2 33 78.8
ClCG09G007480 Citrullus lanatus HOM05D003696 ORTHO05D005158 9.1e-10 66.2 33 78.8
MELO3C015756.2 Cucumis melo HOM05D003696 ORTHO05D005158 9.1e-10 66.2 33 78.8
CsaV3_7G027640 Cucumis sativus L. HOM05D003696 ORTHO05D005158 9.1e-10 66.2 33 78.8
Thhalv10016535m.g Eutrema salsugineum HOM05D003696 ORTHO05D005158 9.1e-10 66.2 33 78.8
Sp4g21230 Schrenkiella parvula HOM05D003696 ORTHO05D005158 9.1e-10 66.2 33 78.8
Sed0021830 Sechium edule HOM05D003696 ORTHO05D005158 9.1e-10 66.2 33 78.8
arahy.Tifrunner.gnm1.ann1.IE214W Arachis hypogaea HOM05D001154 ORTHO05D010892 1.2e-09 65.9 38 68.4
DCAR_002690 Daucus carota HOM05D003696 ORTHO05D005158 1.2e-09 65.9 33 81.8
MD11G1276500 Malus domestica HOM05D003696 ORTHO05D005158 1.2e-09 65.9 33 81.8
Aqoxy5G00373 Aquilegia oxysepala HOM05D003696 ORTHO05D005158 1.5e-09 65.5 33 81.8
EL10Ac5g10463 Beta vulgaris HOM05D003696 ORTHO05D005158 1.5e-09 65.5 33 75.8
CAN.G771.13 Capsicum annuum HOM05D003696 ORTHO05D005158 1.5e-09 65.5 33 78.8
Haze_24522 Corylus avellana HOM05D003696 ORTHO05D005158 1.5e-09 65.5 33 84.8
Peaxi162Scf01311g00020 Petunia axillaris HOM05D003696 ORTHO05D005158 1.5e-09 65.5 33 75.8
TAR362G0028 Trochodendron aralioides HOM05D003696 ORTHO05D005158 1.5e-09 65.5 33 84.8
AUR62011954 Chenopodium quinoa HOM05D003696 ORTHO05D005158 2.0e-09 65.1 33 78.8
AUR62032267 Chenopodium quinoa HOM05D003696 ORTHO05D005158 2.0e-09 65.1 33 78.8
Os03g0796800 Oryza sativa ssp. japonica HOM05D003696 ORTHO05D005158 2.0e-09 65.1 33 78.8
SHI09972 Sapria himalayana HOM05D003696 ORTHO05D005158 2.0e-09 65.1 33 81.8
Zm00001eb060800 Zea mays HOM05D003696 ORTHO05D005158 2.0e-09 65.1 33 78.8
Zm00001eb060850 Zea mays HOM05D003696 ORTHO05D005158 2.0e-09 65.1 33 78.8
Zm00001eb060900 Zea mays HOM05D003696 ORTHO05D020192 2.0e-09 65.1 33 78.8
ATR0665G388 Amborella trichopoda HOM05D003696 ORTHO05D005158 2.6e-09 64.7 33 78.8
BcaC02g07441 Brassica carinata HOM05D003696 ORTHO05D005158 2.6e-09 64.7 33 75.8
A04p29630 Brassica napus HOM05D003696 ORTHO05D005158 2.6e-09 64.7 33 75.8
C04p66920 Brassica napus HOM05D003696 ORTHO05D005158 2.6e-09 64.7 33 75.8
BraA04t18429Z Brassica rapa HOM05D003696 ORTHO05D005158 2.6e-09 64.7 33 75.8
Duzib211G0248 Durio zibethinus HOM05D003696 ORTHO05D020192 2.6e-09 64.7 33 84.8
Rhsim01G0270500 Rhododendron simsii HOM05D003696 ORTHO05D005158 2.6e-09 64.7 33 81.8
vmacro14880 Vaccinium macrocarpon HOM05D003696 ORTHO05D005158 2.6e-09 64.7 33 78.8
Zm00001eb301480 Zea mays HOM05D003696 ORTHO05D005158 2.6e-09 64.7 33 72.7
BcaC02g07336 Brassica carinata HOM05D001127 ORTHO05D002230 3.4e-09 64.3 33 75.8
CARHR133570 Cardamine hirsuta HOM05D003696 ORTHO05D005158 3.4e-09 64.3 33 75.8
Medtr1g070940 Medicago truncatula HOM05D003696 ORTHO05D005158 3.4e-09 64.3 33 84.8
TPR.G39048 Trifolium pratense HOM05D003696 ORTHO05D005158 3.4e-09 64.3 33 84.8
Os07g0181700 Oryza sativa ssp. japonica HOM05D003696 ORTHO05D005158 4.5e-09 63.9 33 69.7
SGA_v2.0_scaffold138G35289 Striga asiatica HOM05D003696 ORTHO05D005158 5.9e-09 63.5 33 75.8
AL4G36150 Arabidopsis lyrata HOM05D003696 ORTHO05D005158 7.7e-09 63.2 33 72.7
AT2G38840 Arabidopsis thaliana HOM05D003696 ORTHO05D005158 7.7e-09 63.2 33 72.7
Carub.0004s2087 Capsella rubella HOM05D003696 ORTHO05D005158 7.7e-09 63.2 33 72.7
CDE04G3179 Ceratophyllum demersum HOM05D003696 ORTHO05D005158 7.7e-09 63.2 33 75.8
arahy.Tifrunner.gnm1.ann1.VHR0A7 Arachis hypogaea HOM05D001154 ORTHO05D010892 1.0e-08 62.8 33 81.8
Mapoly0093s0035 Marchantia polymorpha HOM05D003696 ORTHO05D005158 2.2e-08 61.6 33 69.7
C04p68080 Brassica napus HOM05D003696 ORTHO05D020192 2.9e-08 61.2 33 72.7
BolC4t28313H Brassica oleracea HOM05D003696 ORTHO05D020192 2.9e-08 61.2 33 72.7
HPP92_012304 Vanilla planifolia HOM05D003696 ORTHO05D005158 3.8e-08 60.8 33 69.7
BolC4t28193H Brassica oleracea HOM05D003696 ORTHO05D005158 1.1e-07 59.3 33 72.7
SMO358G0641 Selaginella moellendorffii HOM05D003696 ORTHO05D005158 1.1e-07 59.3 33 72.7
Pp3c22_17680 Physcomitrium patens HOM05D003696 ORTHO05D005158 2.5e-07 58.2 56 48.2
BraA04t18522Z Brassica rapa HOM05D003696 ORTHO05D020192 3.2e-07 57.8 33 69.7


User provided reference genes

Program Settings