Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0063441 Helianthus annuus HOM05D005369 ORTHO05D006955 6.2e-58 227.3 115 100.0
HanXRQChr14g0430991 Helianthus annuus HOM05D005369 ORTHO05D006955 2.2e-15 85.9 54 85.2
HanXRQChr02g0043381 Helianthus annuus HOM05D005369 ORTHO05D006955 9.4e-14 80.5 55 80.0
HanXRQChr17g0551311 Helianthus annuus HOM05D005369 ORTHO05D006955 1.4e-12 76.6 55 74.5
Sabra08G0087600 Salix brachista HOM05D005369 ORTHO05D006955 1.4e-12 76.6 55 74.5
ECA246G2775 Erigeron canadensis HOM05D005369 ORTHO05D006955 5.1e-12 74.7 55 74.5
Potri.010G130300 Populus trichocarpa HOM05D005369 ORTHO05D006955 5.1e-12 74.7 55 72.7
Lj3A1020T60 Lonicera japonica HOM05D005369 ORTHO05D006955 1.1e-11 73.6 55 72.7
CDE08G0426 Ceratophyllum demersum HOM05D005369 ORTHO05D006955 1.5e-11 73.2 55 72.7
CDE09G0148 Ceratophyllum demersum HOM05D005369 ORTHO05D009095 1.5e-11 73.2 55 72.7
Dinv05803 Davidia involucrata HOM05D005369 ORTHO05D006955 1.5e-11 73.2 55 70.9
Cc11_g10670 Coffea canephora HOM05D005369 ORTHO05D006955 2.0e-11 72.8 55 70.9
Manes.14G096800 Manihot esculenta HOM05D005369 ORTHO05D006955 2.0e-11 72.8 55 70.9
Nn4g23711 Nelumbo nucifera HOM05D005369 ORTHO05D006955 2.5e-11 72.4 55 70.9
Potri.008G115700 Populus trichocarpa HOM05D005369 ORTHO05D006955 2.5e-11 72.4 55 69.1
CSS0041757 Camellia sinensis var. sinensis HOM05D005369 ORTHO05D006955 4.3e-11 71.6 55 69.1
Cfa018636 Carpinus fangiana HOM05D005369 ORTHO05D006955 4.3e-11 71.6 55 70.9
Haze_17433 Corylus avellana HOM05D005369 ORTHO05D006955 4.3e-11 71.6 55 70.9
MD13G1047300 Malus domestica HOM05D005369 ORTHO05D006955 4.3e-11 71.6 55 70.9
TWI31G0309 Tripterygium wilfordii HOM05D005369 ORTHO05D006955 4.3e-11 71.6 55 70.9
Cpa.g.sc53.119 Carica papaya HOM05D005369 ORTHO05D006955 5.7e-11 71.2 55 69.1
DCAR_030087 Daucus carota HOM05D005369 ORTHO05D006955 5.7e-11 71.2 55 67.3
Eucgr.G02355 Eucalyptus grandis HOM05D005369 ORTHO05D006955 5.7e-11 71.2 55 69.1
Hund05770 Selenicereus undatus HOM05D005369 ORTHO05D006955 5.7e-11 71.2 55 69.1
Solyc05g009910.3 Solanum lycopersicum HOM05D005369 ORTHO05D006955 5.7e-11 71.2 55 67.3
Sopen05g005710 Solanum pennellii HOM05D005369 ORTHO05D006955 5.7e-11 71.2 55 67.3
PGSC0003DMG400000806 Solanum tuberosum HOM05D005369 ORTHO05D006955 5.7e-11 71.2 55 67.3
Ca_10520_v3 Cicer arietinum L. HOM05D005369 ORTHO05D006955 7.4e-11 70.9 55 69.1
Medtr1g093770 Medicago truncatula HOM05D005369 ORTHO05D006955 7.4e-11 70.9 55 69.1
Sc11g0003050 Simmondsia chinensis HOM05D005369 ORTHO05D006955 7.4e-11 70.9 55 69.1
CiPaw.15G002800 Carya illinoinensis HOM05D005369 ORTHO05D006955 9.7e-11 70.5 55 69.1
PGR119G0805 Punica granatum HOM05D005369 ORTHO05D006955 9.7e-11 70.5 55 67.3
TAR374G1244 Trochodendron aralioides HOM05D005369 ORTHO05D006955 9.7e-11 70.5 55 70.9
Atru.chr11.1367 Acer truncatum HOM05D005369 ORTHO05D006955 1.3e-10 70.1 55 69.1
CAN.G184.84 Capsicum annuum HOM05D005369 ORTHO05D006955 1.3e-10 70.1 55 65.5
Duzib251G0390 Durio zibethinus HOM05D005369 ORTHO05D006955 1.3e-10 70.1 55 69.1
Gohir.A12G171800 Gossypium hirsutum HOM05D005369 ORTHO05D006955 1.3e-10 70.1 55 69.1
Gohir.D12G174200 Gossypium hirsutum HOM05D005369 ORTHO05D006955 1.3e-10 70.1 55 69.1
Gorai.008G186900 Gossypium raimondii HOM05D005369 ORTHO05D006955 1.3e-10 70.1 55 69.1
MD16G1049100 Malus domestica HOM05D005369 ORTHO05D006955 1.3e-10 70.1 55 69.1
Thecc.02G362000 Theobroma cacao HOM05D005369 ORTHO05D006955 1.3e-10 70.1 55 69.1
Actinidia14846 Actinidia chinensis HOM05D005369 ORTHO05D006955 1.7e-10 69.7 55 67.3
DCAR_007223 Daucus carota HOM05D005369 ORTHO05D006955 1.7e-10 69.7 55 65.5
Glyma.01G089100 Glycine max HOM05D005369 ORTHO05D006955 1.7e-10 69.7 55 67.3
Phvul.001G005600 Phaseolus vulgaris HOM05D005369 ORTHO05D006955 1.7e-10 69.7 55 69.1
Phvul.003G026300 Phaseolus vulgaris HOM05D005369 ORTHO05D006955 1.7e-10 69.7 55 69.1
TPR.G18699 Trifolium pratense HOM05D005369 ORTHO05D006955 1.7e-10 69.7 55 67.3
GSVIVG01011963001 Vitis vinifera HOM05D000398 ORTHO05D000551 1.7e-10 69.7 55 69.1
Aqoxy5G00581 Aquilegia oxysepala HOM05D005369 ORTHO05D006955 2.2e-10 69.3 55 67.3
Prupe.1G304600 Prunus persica HOM05D005369 ORTHO05D006955 2.2e-10 69.3 55 70.9
Nitab4.5_0005803g0060 Nicotiana tabacum HOM05D005369 ORTHO05D006955 2.8e-10 68.9 55 65.5
Peaxi162Scf00367g00088 Petunia axillaris HOM05D005369 ORTHO05D006955 2.8e-10 68.9 55 65.5
TAR374G0397 Trochodendron aralioides HOM05D005369 ORTHO05D006955 2.8e-10 68.9 55 69.1
Actinidia16612 Actinidia chinensis HOM05D005369 ORTHO05D006955 3.7e-10 68.6 55 65.5
COL.COLO4_07861 Corchorus olitorius HOM05D005369 ORTHO05D006955 3.7e-10 68.6 55 67.3
FvH4_1g20000 Fragaria vesca HOM05D005369 ORTHO05D006955 3.7e-10 68.6 55 65.5
FAN19G0967 Fragaria x ananassa HOM05D002945 ORTHO05D003314 3.7e-10 68.6 55 65.5
FAN26G1965 Fragaria x ananassa HOM05D005369 ORTHO05D006955 3.7e-10 68.6 55 65.5
Glyma.02G100900 Glycine max HOM05D005369 ORTHO05D006955 3.7e-10 68.6 55 65.5
QL01p001045 Quercus lobata HOM05D005369 ORTHO05D006955 3.7e-10 68.6 55 67.3
VMungo1215G0010 Vigna mungo HOM05D005369 ORTHO05D006955 3.7e-10 68.6 55 67.3
Zm00001eb431600 Zea mays HOM05D005369 ORTHO05D006955 4.8e-10 68.2 55 65.5
TAR622G0781 Trochodendron aralioides HOM05D005369 ORTHO05D006955 6.3e-10 67.8 55 67.3
TAR622G1222 Trochodendron aralioides HOM05D005369 ORTHO05D006955 6.3e-10 67.8 55 67.3
FvH4_4g28180 Fragaria vesca HOM05D005369 ORTHO05D006955 8.2e-10 67.4 55 65.5
FAN07G1070 Fragaria x ananassa HOM05D005369 ORTHO05D006955 8.2e-10 67.4 55 65.5
FAN12G2281 Fragaria x ananassa HOM05D005369 ORTHO05D006955 8.2e-10 67.4 55 65.5
FAN22G1382 Fragaria x ananassa HOM05D005369 ORTHO05D006955 8.2e-10 67.4 55 65.5
Lalb_Chr02g0151791 Lupinus albus HOM05D005369 ORTHO05D006955 8.2e-10 67.4 55 63.6
Psat6g179520 Pisum sativum HOM05D005369 ORTHO05D006955 8.2e-10 67.4 55 65.5
RcHm_v2.0_Chr4g0435941 Rosa chinensis HOM05D005369 ORTHO05D006955 8.2e-10 67.4 55 65.5
THA.LOC104800064 Tarenaya hassleriana HOM05D005369 ORTHO05D006955 8.2e-10 67.4 55 65.5
arahy.Tifrunner.gnm1.ann1.1BLX98 Arachis hypogaea HOM05D005369 ORTHO05D006955 1.1e-09 67.0 55 65.5
arahy.Tifrunner.gnm1.ann1.DD8P8M Arachis hypogaea HOM05D005369 ORTHO05D006955 1.1e-09 67.0 55 65.5
ClCG05G023060 Citrullus lanatus HOM05D005369 ORTHO05D006955 1.1e-09 67.0 55 63.6
MELO3C012211.2 Cucumis melo HOM05D005369 ORTHO05D006955 1.1e-09 67.0 55 63.6
Duzib248G0106 Durio zibethinus HOM05D005369 ORTHO05D006955 1.1e-09 67.0 55 67.3
Lalb_Chr21g0313361 Lupinus albus HOM05D005369 ORTHO05D006955 1.1e-09 67.0 55 63.6
Os02g0324300 Oryza sativa ssp. japonica HOM05D005369 ORTHO05D006955 1.1e-09 67.0 55 63.6
Sed0002723 Sechium edule HOM05D005369 ORTHO05D006955 1.1e-09 67.0 55 63.6
HPP92_005307 Vanilla planifolia HOM05D005369 ORTHO05D006955 1.1e-09 67.0 55 65.5
ATR0681G333 Amborella trichopoda HOM05D005369 ORTHO05D006955 1.4e-09 66.6 55 65.5
EL10Ac6g14509 Beta vulgaris HOM05D005369 ORTHO05D006955 1.4e-09 66.6 55 63.6
Lsat_1_v5_gn_3_58161 Lactuca sativa HOM05D005369 ORTHO05D006955 1.4e-09 66.6 55 65.5
PSO063G4132 Papaver somniferum HOM05D005369 ORTHO05D006955 1.4e-09 66.6 55 65.5
PSO782G4917 Papaver somniferum HOM05D005369 ORTHO05D006955 1.4e-09 66.6 55 65.5
Ciclev10032187m.g Citrus clementina HOM05D005369 ORTHO05D006955 2.4e-09 65.9 55 63.6
FAN28G2319 Fragaria x ananassa HOM05D005369 ORTHO05D006955 2.4e-09 65.9 54 64.8
vmacro11462 Vaccinium macrocarpon HOM05D005369 ORTHO05D006955 3.1e-09 65.5 55 65.5
BolC5t31214H Brassica oleracea HOM05D005369 ORTHO05D006955 4.1e-09 65.1 55 65.5
CANSAT64G0649 Cannabis sativa HOM05D005369 ORTHO05D006955 4.1e-09 65.1 55 61.8
Rhsim09G0113000 Rhododendron simsii HOM05D005369 ORTHO05D006955 4.1e-09 65.1 55 63.6
FAN17G2107 Fragaria x ananassa HOM05D005369 ORTHO05D006955 5.3e-09 64.7 55 63.6
SalBow8G4109 Salvia bowleyana HOM05D005369 ORTHO05D006955 6.9e-09 64.3 55 61.8
BcaC05g26649 Brassica carinata HOM05D005369 ORTHO05D006955 9.1e-09 63.9 55 63.6
BcaNung06366 Brassica carinata HOM05D005369 ORTHO05D006955 9.1e-09 63.9 55 63.6
A08p27110 Brassica napus HOM05D005369 ORTHO05D006955 9.1e-09 63.9 55 63.6
A09p39670 Brassica napus HOM05D005369 ORTHO05D006955 9.1e-09 63.9 55 63.6
C03p72750 Brassica napus HOM05D005369 ORTHO05D006955 9.1e-09 63.9 55 63.6
C05p24850 Brassica napus HOM05D005369 ORTHO05D006955 9.1e-09 63.9 55 63.6
BolC3t19573H Brassica oleracea HOM05D005369 ORTHO05D006955 9.1e-09 63.9 55 63.6
BraA08t34656Z Brassica rapa HOM05D005369 ORTHO05D006955 9.1e-09 63.9 55 63.6
BraA09t39463Z Brassica rapa HOM05D005369 ORTHO05D006955 9.1e-09 63.9 55 63.6
Carub.0001s2489 Capsella rubella HOM05D005369 ORTHO05D006955 9.1e-09 63.9 55 63.6
CARHR025850 Cardamine hirsuta HOM05D005369 ORTHO05D006955 9.1e-09 63.9 55 63.6
Thhalv10008252m.g Eutrema salsugineum HOM05D005369 ORTHO05D006955 9.1e-09 63.9 55 63.6
AUR62002925 Chenopodium quinoa HOM05D005369 ORTHO05D006955 1.2e-08 63.5 55 61.8
AUR62035293 Chenopodium quinoa HOM05D005369 ORTHO05D006955 1.2e-08 63.5 55 61.8
Nitab4.5_0011812g0010 Nicotiana tabacum HOM05D005369 ORTHO05D006955 1.2e-08 63.5 61 60.7
Ah.03g137930 Amaranthus hybridus HOM05D005369 ORTHO05D006955 3.4e-08 62.0 55 60.0
CsaV3_5G033930 Cucumis sativus L. HOM05D005369 ORTHO05D006955 3.4e-08 62.0 55 60.0
SGA_v2.0_scaffold16G07883 Striga asiatica HOM05D005369 ORTHO05D006955 3.4e-08 62.0 55 60.0
Aa31LG7G8920 Aethionema arabicum HOM05D005369 ORTHO05D006955 4.5e-08 61.6 55 61.8
FAN23G0001 Fragaria x ananassa HOM05D002945 ORTHO05D003314 4.5e-08 61.6 55 60.0
Sp1g22610 Schrenkiella parvula HOM05D005369 ORTHO05D006955 4.5e-08 61.6 55 61.8
AL1G39700 Arabidopsis lyrata HOM05D005369 ORTHO05D006955 5.9e-08 61.2 55 60.0
AT1G25682 Arabidopsis thaliana HOM05D005369 ORTHO05D006955 5.9e-08 61.2 55 60.0
MSTRG.7694 Avicennia marina HOM05D005369 ORTHO05D006955 7.7e-08 60.8 55 60.0
SEGI_22738 Sequoiadendron giganteum HOM05D005369 ORTHO05D006955 7.7e-08 60.8 55 60.0
AT1G25988 Arabidopsis thaliana HOM05D005369 ORTHO05D006955 1.7e-07 59.7 55 58.2
Hma1.2p1_0862F.1_g229880 Hydrangea macrophylla HOM05D005369 ORTHO05D006955 1.7e-07 59.7 77 50.6
Lj2g0009483 Lotus japonicus HOM05D005369 ORTHO05D006955 1.7e-07 59.7 55 60.0
SalBow1G2449 Salvia bowleyana HOM05D001761 ORTHO05D001719 8.5e-07 57.4 54 53.7


User provided reference genes

Program Settings