Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 2.3e-173 612.1 298 100.0
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 7.5e-148 527.3 302 84.4
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 3.0e-144 515.4 289 84.4
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 4.4e-140 501.5 295 83.7
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 1.2e-129 466.8 298 77.9
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 1.9e-127 459.5 297 77.1
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 3.7e-123 445.3 286 75.2
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 4.9e-123 444.9 273 78.4
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 8.4e-123 444.1 270 77.4
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 4.1e-122 441.8 295 72.2
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 2.7e-121 439.1 263 79.8
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 6.0e-121 438.0 271 78.6
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 8.6e-120 434.1 283 72.8
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 1.9e-119 433.0 291 73.9
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 4.3e-119 431.8 272 75.4
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 1.6e-118 429.9 284 73.6
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 2.8e-118 429.1 297 70.7
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 2.8e-118 429.1 297 70.7
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 8.1e-118 427.6 288 72.2
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 8.1e-118 427.6 287 74.2
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 8.1e-118 427.6 286 73.1
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.1e-117 427.2 282 74.5
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 1.4e-117 426.8 284 74.6
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 1.4e-117 426.8 285 73.3
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.8e-117 426.4 255 79.6
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 3.1e-117 425.6 255 79.6
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 5.2e-117 424.9 289 71.6
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 8.9e-117 424.1 255 79.2
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 1.5e-116 423.3 290 70.0
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 2.0e-116 422.9 269 76.2
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 3.4e-116 422.2 287 73.2
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 4.4e-116 421.8 287 71.8
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 5.8e-116 421.4 279 73.1
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 7.6e-116 421.0 294 71.4
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 7.6e-116 421.0 279 72.8
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 7.6e-116 421.0 283 71.7
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 2.9e-115 419.1 284 71.1
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 2.9e-115 419.1 266 76.3
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 3.8e-115 418.7 296 69.3
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 8.4e-115 417.5 285 70.9
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 8.4e-115 417.5 280 71.8
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 1.1e-114 417.2 279 72.0
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 1.1e-114 417.2 286 69.9
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 1.4e-114 416.8 291 69.4
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 1.4e-114 416.8 287 70.7
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 1.9e-114 416.4 270 74.1
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.9e-114 416.4 287 72.8
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 2.4e-114 416.0 266 75.2
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 5.4e-114 414.8 272 75.0
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 5.4e-114 414.8 295 69.8
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 5.4e-114 414.8 294 71.1
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 7.1e-114 414.5 289 68.2
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 9.3e-114 414.1 287 68.3
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 1.6e-113 413.3 289 69.9
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.6e-113 413.3 294 70.7
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 3.5e-113 412.1 288 69.4
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 6.0e-113 411.4 291 68.7
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 1.7e-112 409.8 279 71.0
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 2.3e-112 409.5 281 72.6
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 1.1e-111 407.1 281 70.5
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 3.3e-111 405.6 287 67.6
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 5.6e-111 404.8 286 68.5
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 7.3e-111 404.4 295 68.8
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 9.6e-111 404.1 289 69.6
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 4.8e-110 401.7 286 68.2
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 6.2e-110 401.4 267 73.8
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 6.2e-110 401.4 288 69.4
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 5.3e-109 398.3 247 79.4
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 6.9e-109 397.9 303 67.7
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 9.0e-109 397.5 284 68.3
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 2.0e-108 396.4 238 80.3
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 3.4e-108 395.6 284 68.0
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 5.8e-108 394.8 280 68.2
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 7.6e-108 394.4 284 68.3
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 2.9e-107 392.5 222 81.5
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 6.4e-107 391.3 282 65.6
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 7.1e-106 387.9 300 67.7
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 2.7e-105 386.0 291 64.9
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 1.5e-103 380.2 255 69.8
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 4.3e-103 378.6 283 65.0
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 8.1e-102 374.4 287 67.9
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 2.9e-99 365.9 243 75.3
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 7.1e-98 361.3 263 65.0
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.2e-97 360.5 208 81.2
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 1.2e-97 360.5 253 66.0
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 2.1e-97 359.8 285 59.3
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 6.0e-97 358.2 275 64.7
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 1.9e-95 353.2 297 58.6
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 2.5e-95 352.8 277 65.3
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 2.1e-94 349.7 240 72.5
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 1.4e-93 347.1 289 58.1
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 2.6e-92 342.8 384 48.4
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 1.0e-91 340.9 296 55.1
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 1.4e-90 337.0 282 58.2
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 5.7e-87 325.1 232 66.4
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 1.6e-86 323.6 222 67.6
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 6.3e-86 321.6 279 56.6
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 1.1e-85 320.9 215 73.0
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 1.8e-85 320.1 269 58.0
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 3.1e-85 319.3 269 58.0
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 3.1e-85 319.3 269 58.0
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 3.1e-85 319.3 269 58.0
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 4.1e-85 318.9 270 57.8
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 6.9e-85 318.2 269 57.6
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 1.5e-84 317.0 269 57.2
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 1.7e-83 313.5 284 54.9
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 2.2e-83 313.2 273 58.2
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 3.2e-82 309.3 292 53.4
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 9.3e-82 307.8 270 56.3
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 1.6e-81 307.0 245 61.2
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 4.6e-81 305.4 266 55.6
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 2.3e-80 303.1 257 58.0
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 6.7e-80 301.6 204 72.1
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 3.4e-76 289.3 264 54.2
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 1.7e-75 287.0 229 58.5
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 1.9e-74 283.5 270 55.6
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 2.6e-68 263.1 203 60.6
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 2.2e-67 260.0 272 49.3
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 1.4e-64 250.8 235 53.6
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 1.7e-62 243.8 282 47.5
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 1.7e-59 233.8 143 76.2
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 1.6e-57 227.3 266 47.0
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 4.0e-56 222.6 230 48.7
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 4.5e-52 209.1 189 58.2
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 7.7e-44 181.8 149 61.7
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 3.4e-39 166.4 287 36.6
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 1.9e-34 150.6 127 55.9
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 1.0e-32 144.8 88 83.0
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 1.5e-26 124.4 212 34.0
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 1.9e-21 107.5 158 36.7
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 2.4e-21 107.1 75 66.7
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 3.5e-20 103.2 161 35.4
Ca_24194_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 6.6e-19 99.0 115 49.6
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 5.6e-18 95.9 55 76.4
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 7.3e-18 95.5 49 93.9
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 1.4e-13 81.3 43 81.4
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 1.9e-13 80.9 86 51.2
Cfa024351 Carpinus fangiana HOM05D005541 ORTHO05D124727 1.7e-06 57.8 224 26.3


User provided reference genes

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