Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 2.3e-37 158.3 74 100.0
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 2.8e-27 124.8 78 82.1
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 3.1e-26 121.3 77 79.2
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 9.0e-26 119.8 77 77.9
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 5.8e-25 117.1 77 75.3
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 1.7e-21 105.5 77 71.4
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 2.5e-12 75.1 52 67.3
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 3.3e-12 74.7 41 73.2
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.3e-12 74.7 85 44.7
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 4.3e-12 74.3 44 70.5
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 7.4e-12 73.6 40 80.0
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 7.4e-12 73.6 40 80.0
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 9.6e-12 73.2 44 68.2
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 9.6e-12 73.2 46 69.6
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 1.3e-11 72.8 35 88.6
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 1.3e-11 72.8 35 88.6
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 1.3e-11 72.8 35 88.6
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 1.3e-11 72.8 35 88.6
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 1.3e-11 72.8 35 88.6
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 1.3e-11 72.8 35 88.6
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 1.3e-11 72.8 41 73.2
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 2.1e-11 72.0 36 80.6
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 2.1e-11 72.0 33 90.9
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 2.1e-11 72.0 39 79.5
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 2.8e-11 71.6 47 68.1
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 2.8e-11 71.6 33 87.9
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 2.8e-11 71.6 36 83.3
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 2.8e-11 71.6 33 87.9
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 2.8e-11 71.6 36 80.6
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 3.7e-11 71.2 35 82.9
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 3.7e-11 71.2 35 82.9
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 4.8e-11 70.9 36 80.6
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 4.8e-11 70.9 36 80.6
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 4.8e-11 70.9 36 80.6
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 4.8e-11 70.9 36 80.6
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 4.8e-11 70.9 36 80.6
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 6.2e-11 70.5 35 82.9
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 6.2e-11 70.5 36 77.8
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 6.2e-11 70.5 33 84.8
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 8.1e-11 70.1 84 42.9
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 8.1e-11 70.1 33 90.9
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 8.1e-11 70.1 44 68.2
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 8.1e-11 70.1 44 65.9
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 8.1e-11 70.1 48 60.4
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.1e-10 69.7 91 42.9
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.1e-10 69.7 57 63.2
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.1e-10 69.7 33 84.8
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 1.1e-10 69.7 33 84.8
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.4e-10 69.3 42 64.3
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.4e-10 69.3 33 84.8
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.4e-10 69.3 37 75.7
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 1.4e-10 69.3 37 75.7
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 1.8e-10 68.9 33 84.8
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.8e-10 68.9 41 65.9
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.8e-10 68.9 41 65.9
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.4e-10 68.6 70 48.6
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 2.4e-10 68.6 41 73.2
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 3.1e-10 68.2 71 50.7
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 3.1e-10 68.2 36 77.8
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.1e-10 68.2 62 53.2
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 3.1e-10 68.2 62 53.2
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 4.0e-10 67.8 89 39.3
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 4.0e-10 67.8 32 87.5
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 4.0e-10 67.8 42 69.0
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 4.0e-10 67.8 42 69.0
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 4.0e-10 67.8 33 81.8
Eucgr.A02353 Eucalyptus grandis HOM05D003654 ORTHO05D004176 5.3e-10 67.4 31 90.3
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 5.3e-10 67.4 33 84.8
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 5.3e-10 67.4 33 84.8
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 5.3e-10 67.4 33 84.8
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 6.9e-10 67.0 72 43.1
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 6.9e-10 67.0 32 84.4
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 6.9e-10 67.0 33 87.9
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 6.9e-10 67.0 37 70.3
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 6.9e-10 67.0 32 84.4
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 9.0e-10 66.6 36 72.2
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 9.0e-10 66.6 33 81.8
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 9.0e-10 66.6 36 77.8
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.5e-09 65.9 36 72.2
Prupe.7G061500 Prunus persica HOM05D003654 ORTHO05D004176 1.5e-09 65.9 89 42.7
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 1.5e-09 65.9 37 70.3
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.5e-09 65.9 37 70.3
Zm00001eb215460 Zea mays HOM05D003654 ORTHO05D004176 1.5e-09 65.9 33 81.8
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 2.0e-09 65.5 31 83.9
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 2.0e-09 65.5 37 73.0
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 2.0e-09 65.5 86 43.0
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 2.6e-09 65.1 32 81.2
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 2.6e-09 65.1 33 75.8
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 2.6e-09 65.1 33 75.8
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 3.4e-09 64.7 33 75.8
Ca_08602_v3 Cicer arietinum L. HOM05D003654 ORTHO05D004176 3.4e-09 64.7 44 68.2
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 3.4e-09 64.7 37 73.0
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 3.4e-09 64.7 35 74.3
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 4.5e-09 64.3 39 71.8
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 4.5e-09 64.3 33 78.8
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 4.5e-09 64.3 41 65.9
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 4.5e-09 64.3 41 65.9
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 4.5e-09 64.3 32 84.4
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 5.8e-09 63.9 35 74.3
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 5.8e-09 63.9 33 75.8
Sed0002974 Sechium edule HOM05D003654 ORTHO05D004176 5.8e-09 63.9 36 72.2
Thecc.01G407700 Theobroma cacao HOM05D003654 ORTHO05D004176 5.8e-09 63.9 30 90.0
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 7.6e-09 63.5 31 83.9
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 7.6e-09 63.5 33 75.8
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 7.6e-09 63.5 32 81.2
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 7.6e-09 63.5 75 46.7
Nn2g15256 Nelumbo nucifera HOM05D003654 ORTHO05D004176 7.6e-09 63.5 33 78.8
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 7.6e-09 63.5 33 72.7
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 1.0e-08 63.2 33 78.8
Eucgr.A02351 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.0e-08 63.2 30 86.7
Manes.07G007900 Manihot esculenta HOM05D003654 ORTHO05D004176 1.0e-08 63.2 30 86.7
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 1.3e-08 62.8 32 81.2
BcaB02g08316 Brassica carinata HOM05D003654 ORTHO05D004176 1.7e-08 62.4 30 86.7
Migut.B01278 Erythranthe guttata HOM05D003654 ORTHO05D004176 1.7e-08 62.4 46 58.7
Os03g0734500 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 2.2e-08 62.0 32 78.1
SalBow6G0563 Salvia bowleyana HOM05D003654 ORTHO05D004176 2.2e-08 62.0 29 89.7
Aqoxy7G00798 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 2.9e-08 61.6 32 78.1
AT3G57450 Arabidopsis thaliana HOM05D003654 ORTHO05D004176 2.9e-08 61.6 30 83.3
AUR62009401 Chenopodium quinoa HOM05D003654 ORTHO05D004176 2.9e-08 61.6 31 80.6
Ciclev10006585m.g Citrus clementina HOM05D003654 ORTHO05D004176 2.9e-08 61.6 30 83.3
ECA248G2069 Erigeron canadensis HOM05D003654 ORTHO05D004176 2.9e-08 61.6 36 72.2
Nitab4.5_0000733g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 2.9e-08 61.6 39 64.1
Os10g0417300 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 2.9e-08 61.6 31 80.6
Phvul.003G066700 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 2.9e-08 61.6 63 46.0
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 2.9e-08 61.6 89 43.8
Migut.N01784 Erythranthe guttata HOM05D003654 ORTHO05D004176 3.8e-08 61.2 30 83.3
A04p03110 Brassica napus HOM05D003654 ORTHO05D004176 4.9e-08 60.8 30 83.3
BraA04t16034Z Brassica rapa HOM05D003654 ORTHO05D004176 4.9e-08 60.8 30 83.3
Glyma.05G150100 Glycine max HOM05D003654 ORTHO05D004176 4.9e-08 60.8 61 52.5
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 4.9e-08 60.8 43 67.4
Os07g0185900 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 4.9e-08 60.8 29 86.2
SalBow5G4200 Salvia bowleyana HOM05D003654 ORTHO05D004176 4.9e-08 60.8 33 75.8
SGA_v2.0_scaffold119G32750 Striga asiatica HOM05D003654 ORTHO05D004176 4.9e-08 60.8 33 75.8
Phvul.003G048800 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 6.5e-08 60.5 41 63.4
Sed0011402 Sechium edule HOM05D003654 ORTHO05D004176 6.5e-08 60.5 30 83.3
COL.COLO4_28276 Corchorus olitorius HOM05D003654 ORTHO05D004176 8.4e-08 60.1 30 80.0
Eucgr.G03361 Eucalyptus grandis HOM05D003654 ORTHO05D004176 8.4e-08 60.1 30 83.3
Glyma.08G106900 Glycine max HOM05D003654 ORTHO05D004176 8.4e-08 60.1 33 75.8
Lsat_1_v5_gn_4_31200 Lactuca sativa HOM05D003654 ORTHO05D004176 8.4e-08 60.1 36 72.2
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 8.4e-08 60.1 32 78.1
Solyc02g071460.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 8.4e-08 60.1 30 80.0
BcaB02g07603 Brassica carinata HOM05D003654 ORTHO05D004176 1.1e-07 59.7 30 80.0
BcaC08g44845 Brassica carinata HOM05D003654 ORTHO05D004176 1.1e-07 59.7 30 80.0
BolC6t37599H Brassica oleracea HOM05D003654 ORTHO05D004176 1.1e-07 59.7 30 80.0
Hma1.2p1_0493F.1_g164900 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.4e-07 59.3 33 72.7
Hma1.2p1_0493F.1_g164905 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.4e-07 59.3 33 72.7
Sed0005344 Sechium edule HOM05D003654 ORTHO05D004176 1.4e-07 59.3 39 59.0
Cpa.g.c30295 Carica papaya HOM05D003654 ORTHO05D004176 1.9e-07 58.9 30 80.0
Hma1.2p1_0589F.1_g184810 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.9e-07 58.9 33 72.7
Nn1g04367 Nelumbo nucifera HOM05D003654 ORTHO05D004176 3.2e-07 58.2 43 62.8
Cfa010801 Carpinus fangiana HOM05D003654 ORTHO05D004176 4.2e-07 57.8 30 80.0
DCAR_003222 Daucus carota HOM05D003654 ORTHO05D004176 4.2e-07 57.8 31 77.4
FAN02G2075 Fragaria x ananassa HOM05D003654 ORTHO05D004176 7.1e-07 57.0 30 76.7
RcHm_v2.0_Chr3g0482161 Rosa chinensis HOM05D003654 ORTHO05D004176 7.1e-07 57.0 30 76.7
Haze_03159 Corylus avellana HOM05D003654 ORTHO05D004176 9.3e-07 56.6 30 76.7
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 1.6e-06 55.8 33 72.7
Migut.J01761 Erythranthe guttata HOM05D003654 ORTHO05D004176 1.6e-06 55.8 30 76.7
Peaxi162Scf00138g00032 Petunia axillaris HOM05D003654 ORTHO05D004176 1.6e-06 55.8 39 59.0
VMungo0251G2538 Vigna mungo HOM05D003654 ORTHO05D004176 1.6e-06 55.8 33 72.7
Lsat_1_v5_gn_1_105600 Lactuca sativa HOM05D003654 ORTHO05D004176 2.1e-06 55.5 36 66.7
Lj3g0024349 Lotus japonicus HOM05D003654 ORTHO05D004176 2.1e-06 55.5 52 51.9
RcHm_v2.0_Chr3g0482181 Rosa chinensis HOM05D003654 ORTHO05D004176 2.1e-06 55.5 30 73.3
Lalb_Chr25g0282791 Lupinus albus HOM05D003654 ORTHO05D004176 2.7e-06 55.1 48 56.2
Potri.012G032500 Populus trichocarpa HOM05D003654 ORTHO05D004176 2.7e-06 55.1 35 71.4
Prupe.8G033700 Prunus persica HOM05D003654 ORTHO05D004176 3.5e-06 54.7 31 67.7
Manes.08G050800 Manihot esculenta HOM05D003654 ORTHO05D004176 4.6e-06 54.3 30 73.3
Lalb_Chr25g0282781 Lupinus albus HOM05D003654 ORTHO05D004176 6.0e-06 53.9 34 70.6
Nn7g36270 Nelumbo nucifera HOM05D003654 ORTHO05D004176 6.0e-06 53.9 33 72.7
Psat5g210480 Pisum sativum HOM05D003654 ORTHO05D004176 6.0e-06 53.9 41 53.7
Nitab4.5_0005680g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 7.9e-06 53.5 40 55.0
Potri.009G058500 Populus trichocarpa HOM05D003654 ORTHO05D004176 7.9e-06 53.5 32 71.9
Sopen08g013660 Solanum pennellii HOM05D003654 ORTHO05D004176 7.9e-06 53.5 73 34.2
TPR.G28386 Trifolium pratense HOM05D003654 ORTHO05D004176 7.9e-06 53.5 33 63.6


User provided reference genes

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