Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 0.0e+00 1758.0 876 100.0
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 0.0e+00 1392.9 931 75.7
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 0.0e+00 1268.8 913 72.1
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 0.0e+00 1193.7 887 67.9
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1167.1 928 64.4
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1162.5 927 63.8
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1149.8 925 64.8
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1147.9 925 63.6
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1144.4 928 63.4
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1140.9 928 62.9
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1139.0 912 64.7
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1138.3 926 62.3
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1128.6 903 63.6
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1128.6 919 64.0
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1125.5 933 62.3
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1124.4 927 62.4
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1122.8 920 62.2
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1117.4 940 62.2
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1117.4 920 61.8
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1117.4 894 63.8
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1116.3 927 62.2
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1114.8 920 61.6
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1112.8 931 62.2
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1112.4 970 60.1
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 0.0e+00 1111.3 960 61.4
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1110.1 967 59.6
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1107.8 938 61.0
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1104.7 944 61.8
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1102.4 921 61.5
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1100.5 916 62.7
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1099.7 915 63.2
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1097.4 941 61.7
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1096.6 928 61.6
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1096.3 928 60.9
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 0.0e+00 1095.1 955 61.2
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1094.7 932 61.5
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1094.7 932 61.8
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1092.8 908 62.1
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1092.0 904 63.3
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1091.3 894 63.0
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1089.3 905 62.8
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1088.9 901 62.3
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1087.8 942 61.1
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1087.8 941 61.5
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 0.0e+00 1087.0 911 62.3
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1085.5 936 60.8
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1085.1 909 62.8
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1079.7 968 58.9
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 0.0e+00 1078.9 942 59.7
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 6.0e-312 1074.7 895 61.6
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 6.0e-312 1074.3 921 60.4
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 6.0e-312 1073.5 922 59.7
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 1.2e-311 1072.8 921 59.7
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 2.4e-311 1072.0 907 60.6
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 7.2e-311 1070.5 926 60.6
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 1.2e-310 1069.7 986 57.9
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 1.6e-310 1069.3 915 60.7
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 2.0e-310 1068.9 986 58.0
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 2.0e-310 1068.9 910 60.7
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 2.0e-310 1068.9 915 59.3
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 2.6e-310 1068.5 910 60.7
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 2.6e-310 1068.5 910 60.7
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 4.6e-310 1067.8 920 60.8
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 5.9e-310 1067.4 913 60.5
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 5.9e-310 1067.4 917 60.2
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 5.9e-310 1067.4 927 59.4
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 1.0e-309 1066.6 918 60.3
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 1.7e-309 1065.8 893 61.9
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 2.2e-309 1065.4 986 57.7
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 3.2e-308 1061.6 903 59.9
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 3.2e-308 1061.6 903 59.9
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 3.2e-308 1061.6 921 60.6
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 9.5e-308 1060.1 920 58.7
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 1.6e-307 1059.3 919 58.5
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 2.1e-307 1058.9 920 58.9
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 2.7e-307 1058.5 926 59.2
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 2.7e-307 1058.5 918 60.0
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 6.8e-306 1053.9 918 60.9
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 2.6e-305 1052.0 913 60.2
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 5.7e-305 1050.8 936 58.9
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 7.5e-305 1050.4 925 59.4
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 2.8e-304 1048.5 912 59.5
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 2.4e-303 1045.4 912 60.5
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 7.0e-303 1043.9 949 59.1
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 5.9e-302 1040.8 864 63.3
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 1.0e-301 1040.0 924 59.6
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 2.5e-300 1035.4 1050 54.2
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 3.3e-300 1035.0 1015 55.6
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 7.3e-300 1033.9 851 63.8
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 7.3e-300 1033.9 863 62.6
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 4.7e-299 1031.2 850 62.2
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 4.0e-298 1028.1 935 56.8
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 8.3e-296 1020.4 955 56.4
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 1.8e-295 1019.2 875 59.2
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 9.2e-295 1016.9 932 59.0
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 5.2e-290 1001.1 919 57.0
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 2.4e-287 992.3 1036 53.7
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 1.3e-285 986.5 952 56.8
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 1.1e-284 983.4 945 56.4
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 9.5e-284 980.3 1009 53.9
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 4.4e-281 971.5 1148 49.5
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 1.3e-280 969.9 838 60.7
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 1.3e-280 969.9 923 56.3
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 2.2e-280 969.1 947 56.1
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 3.7e-280 968.4 899 57.7
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 8.3e-280 967.2 1031 51.7
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.4e-279 966.5 1026 53.7
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 4.1e-279 964.9 921 55.6
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 3.3e-276 955.3 843 59.1
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 7.3e-276 954.1 821 59.4
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 2.0e-273 946.0 813 60.0
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 1.4e-255 886.7 942 53.0
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 3.5e-254 882.1 894 53.2
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 2.8e-251 872.5 755 61.1
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 2.5e-244 849.4 800 55.0
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 1.3e-243 847.0 915 50.1
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 1.3e-240 837.0 869 50.3
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 1.5e-236 823.5 749 56.2
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 1.5e-233 813.5 672 62.9
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 6.9e-226 788.1 1129 40.5
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 1.2e-214 750.7 713 56.5
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 1.3e-195 687.6 617 58.5
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 3.2e-191 672.9 654 56.9
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 3.3e-183 646.4 417 74.6
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 1.2e-180 637.9 624 55.9
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 1.1e-162 578.2 746 45.8
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.9e-159 567.4 352 76.1
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.0e-156 557.4 400 69.8
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 3.2e-154 550.1 386 71.2
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 6.4e-131 472.6 553 50.6
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 3.9e-128 463.4 462 55.6
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 9.0e-125 452.2 299 72.9
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 1.3e-123 448.4 291 73.5
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 7.4e-119 432.6 296 70.6
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.3e-115 421.8 704 40.2
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 5.0e-115 419.9 544 48.7
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 1.2e-100 372.1 314 60.8
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 1.7e-99 368.2 345 53.0
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 2.7e-97 360.9 423 48.2
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 2.2e-83 314.7 214 70.1
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 2.1e-52 211.8 150 69.3
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.9e-50 205.3 139 66.9
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 2.4e-45 188.3 129 69.0
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.9e-37 162.2 208 46.2
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 4.0e-32 144.4 275 39.6
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.4e-29 136.0 107 61.7
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 5.4e-29 134.0 76 82.9
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 3.9e-27 127.9 130 53.1
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 5.6e-26 124.0 122 52.5
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 5.3e-24 117.5 86 59.3
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 2.0e-23 115.5 112 51.8
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 1.5e-15 89.4 66 66.7
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 2.0e-15 89.0 89 53.9
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 3.8e-14 84.7 160 35.6
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 2.3e-11 75.5 57 66.7
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 6.7e-11 73.9 68 55.9
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 6.7e-11 73.9 51 64.7
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 1.9e-10 72.4 134 32.1
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 9.6e-10 70.1 99 41.4
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 2.8e-09 68.6 62 56.5
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 4.8e-09 67.8 50 62.0
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 9.0e-08 63.5 53 54.7
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 9.0e-08 63.5 53 52.8
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 9.0e-08 63.5 53 52.8
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 2.0e-07 62.4 52 61.5
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 3.4e-07 61.6 48 56.2


User provided reference genes

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