Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0062071 Helianthus annuus HOM05D007420 ORTHO05D009353 4.2e-37 157.5 80 100.0
ECA240G1805 Erigeron canadensis HOM05D007420 ORTHO05D009353 1.1e-29 132.9 83 88.0
Cc06_g08970 Coffea canephora HOM05D007420 ORTHO05D009353 1.8e-24 115.5 71 78.9
Gohir.A06G058200 Gossypium hirsutum HOM05D007420 ORTHO05D009353 2.4e-24 115.2 77 74.0
Gohir.D06G056500 Gossypium hirsutum HOM05D007420 ORTHO05D009353 2.4e-24 115.2 77 74.0
Lalb_Chr13g0302091 Lupinus albus HOM05D007420 ORTHO05D009353 1.2e-23 112.8 77 72.7
SalBow1G2150 Salvia bowleyana HOM05D007420 ORTHO05D009353 2.0e-23 112.1 63 84.1
Migut.L01525 Erythranthe guttata HOM05D007420 ORTHO05D009353 2.6e-23 111.7 65 81.5
Thhalv10019233m.g Eutrema salsugineum HOM05D007420 ORTHO05D009353 7.7e-23 110.2 77 74.0
Oeu021594.1 Olea europaea HOM05D007420 ORTHO05D009353 7.7e-23 110.2 77 72.7
THA.LOC104809007 Tarenaya hassleriana HOM05D007420 ORTHO05D009353 7.7e-23 110.2 80 68.8
Psat4g040560 Pisum sativum HOM05D007420 ORTHO05D009353 1.0e-22 109.8 79 70.9
Phvul.003G161000 Phaseolus vulgaris HOM05D007420 ORTHO05D009353 1.3e-22 109.4 77 67.5
AL2G27600 Arabidopsis lyrata HOM05D007420 ORTHO05D009353 2.2e-22 108.6 77 72.7
Sp5g23780 Schrenkiella parvula HOM05D007420 ORTHO05D009353 2.2e-22 108.6 77 72.7
TPR.G9078 Trifolium pratense HOM05D007420 ORTHO05D009353 2.9e-22 108.2 73 75.3
Atru.chr7.1239 Acer truncatum HOM05D007420 ORTHO05D009353 3.8e-22 107.8 77 67.5
AT1G68680 Arabidopsis thaliana HOM05D007420 ORTHO05D009353 3.8e-22 107.8 77 72.7
Eucgr.C01109 Eucalyptus grandis HOM05D007420 ORTHO05D009353 5.0e-22 107.5 77 68.8
BolC6t38847H Brassica oleracea HOM05D007420 ORTHO05D009353 6.5e-22 107.1 77 72.7
Nn2g11931 Nelumbo nucifera HOM05D007420 ORTHO05D009353 6.5e-22 107.1 77 68.8
TWI32G1185 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 6.5e-22 107.1 80 66.2
Potri.011G024500 Populus trichocarpa HOM05D007420 ORTHO05D009353 1.1e-21 106.3 79 69.6
RcHm_v2.0_Chr2g0089401 Rosa chinensis HOM05D007420 ORTHO05D009353 1.1e-21 106.3 77 72.7
PGR102G0502 Punica granatum HOM05D007420 ORTHO05D009353 1.4e-21 105.9 78 65.4
Thecc.09G120400 Theobroma cacao HOM05D007420 ORTHO05D009353 1.4e-21 105.9 67 74.6
CDE01G0426 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 1.9e-21 105.5 76 68.4
CARHR061490 Cardamine hirsuta HOM05D007420 ORTHO05D009353 2.5e-21 105.1 77 70.1
CDE03G0079 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 2.5e-21 105.1 76 69.7
Manes.06G052500 Manihot esculenta HOM05D007420 ORTHO05D009353 3.2e-21 104.8 77 67.5
TWI34G1269 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 4.2e-21 104.4 63 77.8
CAN.G1424.4 Capsicum annuum HOM05D007420 ORTHO05D009353 7.2e-21 103.6 73 69.9
CANSAT56G4260 Cannabis sativa HOM05D007420 ORTHO05D009353 1.2e-20 102.8 77 67.5
Carub.0002s1522 Capsella rubella HOM05D007420 ORTHO05D009353 1.2e-20 102.8 77 70.1
PSO170G5167 Papaver somniferum HOM05D007420 ORTHO05D009353 1.2e-20 102.8 61 78.7
CiPaw.03G239800 Carya illinoinensis HOM05D007420 ORTHO05D009353 2.1e-20 102.1 77 67.5
Eucgr.C01288 Eucalyptus grandis HOM05D007420 ORTHO05D009353 2.1e-20 102.1 66 74.2
Nn8g39361 Nelumbo nucifera HOM05D007420 ORTHO05D009353 2.7e-20 101.7 77 66.2
Sopen07g001360 Solanum pennellii HOM05D007420 ORTHO05D009353 2.7e-20 101.7 71 67.6
arahy.Tifrunner.gnm1.ann1.XPL4AE Arachis hypogaea HOM05D007420 ORTHO05D009353 6.1e-20 100.5 64 76.6
DCAR_014860 Daucus carota HOM05D007420 ORTHO05D009353 6.1e-20 100.5 71 73.2
Sed0006703 Sechium edule HOM05D007420 ORTHO05D009353 6.1e-20 100.5 76 63.2
Solyc07g005430.3 Solanum lycopersicum HOM05D007420 ORTHO05D009353 6.1e-20 100.5 71 66.2
ClCG11G002810 Citrullus lanatus HOM05D007420 ORTHO05D009353 7.9e-20 100.1 72 69.4
Duzib150G1214 Durio zibethinus HOM05D007420 ORTHO05D009353 1.0e-19 99.8 61 78.7
arahy.Tifrunner.gnm1.ann1.QR7ILI Arachis hypogaea HOM05D007420 ORTHO05D009353 1.4e-19 99.4 64 75.0
Gorai.010G066200 Gossypium raimondii HOM05D007420 ORTHO05D009353 1.8e-19 99.0 71 69.0
CsaV3_2G002630 Cucumis sativus L. HOM05D007420 ORTHO05D009353 2.3e-19 98.6 72 68.1
QL02p087339 Quercus lobata HOM05D007420 ORTHO05D009353 2.3e-19 98.6 68 72.1
Aa31sc12G90 Aethionema arabicum HOM05D007420 ORTHO05D009353 3.0e-19 98.2 74 67.6
MD15G1177800 Malus domestica HOM05D007420 ORTHO05D009353 3.0e-19 98.2 78 64.1
GSVIVG01015481001 Vitis vinifera HOM05D007420 ORTHO05D009353 3.0e-19 98.2 76 60.5
Glyma.05G010400 Glycine max HOM05D007420 ORTHO05D009353 8.8e-19 96.7 67 70.1
SalBow6G6280 Salvia bowleyana HOM05D007420 ORTHO05D009353 1.5e-18 95.9 69 73.9
Haze_25622 Corylus avellana HOM05D007420 ORTHO05D009353 3.3e-18 94.7 70 67.1
BraA07t30816Z Brassica rapa HOM05D007420 ORTHO05D009353 4.4e-18 94.4 69 72.5
EL10Ac8g18588 Beta vulgaris HOM05D007420 ORTHO05D009353 5.7e-18 94.0 62 74.2
C06p37440 Brassica napus HOM05D007420 ORTHO05D032647 7.4e-18 93.6 70 70.0
Lj4g0001906 Lotus japonicus HOM05D007420 ORTHO05D009353 7.4e-18 93.6 67 68.7
BcaB03g15440 Brassica carinata HOM05D007420 ORTHO05D009353 9.7e-18 93.2 68 73.5
BcaC08g45947 Brassica carinata HOM05D007420 ORTHO05D009353 9.7e-18 93.2 68 73.5
Ciclev10009973m.g Citrus clementina HOM05D007420 ORTHO05D009353 9.7e-18 93.2 73 64.4
Eucgr.L02717 Eucalyptus grandis HOM05D007420 ORTHO05D009353 9.7e-18 93.2 67 70.1
Actinidia22015 Actinidia chinensis HOM05D007420 ORTHO05D009353 1.3e-17 92.8 67 65.7
A07p31870 Brassica napus HOM05D007420 ORTHO05D009353 1.3e-17 92.8 72 69.4
CSS0016223 Camellia sinensis var. sinensis HOM05D007420 ORTHO05D009353 1.3e-17 92.8 67 65.7
Prupe.7G237700 Prunus persica HOM05D007420 ORTHO05D009353 1.3e-17 92.8 66 69.7
Cfa003340 Carpinus fangiana HOM05D007420 ORTHO05D009353 1.7e-17 92.4 70 67.1
Eucgr.C01298 Eucalyptus grandis HOM05D007420 ORTHO05D009353 2.2e-17 92.0 67 68.7
Pp3c11_6600 Physcomitrium patens HOM05D007420 ORTHO05D009353 2.2e-17 92.0 63 68.3
unitig_85.g27256 Utricularia gibba HOM05D000953 ORTHO05D000231 3.7e-17 91.3 53 81.1
Peaxi162Scf00361g00611 Petunia axillaris HOM05D007420 ORTHO05D009353 8.2e-17 90.1 65 64.6
Dinv36572 Davidia involucrata HOM05D007420 ORTHO05D009353 1.1e-16 89.7 74 56.8
FvH4_1g03930 Fragaria vesca HOM05D007420 ORTHO05D009353 1.8e-16 89.0 72 62.5
Mapoly0048s0106 Marchantia polymorpha HOM05D007420 ORTHO05D009353 1.8e-16 89.0 79 58.2
BcaB03g15439 Brassica carinata HOM05D007420 ORTHO05D009353 4.1e-16 87.8 69 69.6
Zm00001eb283090 Zea mays HOM05D007420 ORTHO05D009353 4.1e-16 87.8 57 70.2
CBR_g3296 Chara braunii HOM05D007420 ORTHO05D009353 5.3e-16 87.4 80 53.8
Nitab4.5_0000750g0050 Nicotiana tabacum HOM05D007420 ORTHO05D009353 5.3e-16 87.4 63 66.7
Nitab4.5_0001193g0010 Nicotiana tabacum HOM05D007420 ORTHO05D009353 5.3e-16 87.4 63 66.7
Sc14g0000270 Simmondsia chinensis HOM05D007420 ORTHO05D009353 7.0e-16 87.0 65 67.7
Sabra11G0015300 Salix brachista HOM05D007420 ORTHO05D009353 1.6e-15 85.9 70 62.9
vmacro20648 Vaccinium macrocarpon HOM05D007420 ORTHO05D009353 2.0e-15 85.5 67 64.2
AagrBONN_evm.TU.Sc2ySwM_362.2614 Anthoceros agrestis HOM05D007420 ORTHO05D009353 2.6e-15 85.1 71 63.4
MELO3C004528.2 Cucumis melo HOM05D007420 ORTHO05D009353 2.6e-15 85.1 65 67.7
AUR62033448 Chenopodium quinoa HOM05D007420 ORTHO05D009353 3.5e-15 84.7 53 73.6
Hma1.2p1_0018F.1_g012820 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 3.5e-15 84.7 67 64.2
HPP92_024085 Vanilla planifolia HOM05D007420 ORTHO05D009353 3.5e-15 84.7 69 62.3
Hma1.2p1_0018F.1_g012830 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 1.3e-14 82.8 56 69.6
FAN23G1905 Fragaria x ananassa HOM05D007420 ORTHO05D009353 1.7e-14 82.4 67 64.2
FAN26G1322 Fragaria x ananassa HOM05D007420 ORTHO05D009353 1.7e-14 82.4 67 64.2
FAN28G1248 Fragaria x ananassa HOM05D007420 ORTHO05D009353 1.7e-14 82.4 67 64.2
MD02G1037600 Malus domestica HOM05D007420 ORTHO05D009353 1.7e-14 82.4 69 65.2
SHI28897 Sapria himalayana HOM05D007420 ORTHO05D009353 1.7e-14 82.4 71 54.9
FAN19G3121 Fragaria x ananassa HOM05D007420 ORTHO05D009353 5.0e-14 80.9 53 71.7
SEGI_24866 Sequoiadendron giganteum HOM05D007420 ORTHO05D009353 5.0e-14 80.9 69 63.8
FAN22G2307 Fragaria x ananassa HOM05D022909 ORTHO05D009353 6.5e-14 80.5 69 60.9
Hund09157 Selenicereus undatus HOM05D007420 ORTHO05D009353 1.9e-13 79.0 67 62.7
MBI01_g34140_MAGBIO Magnolia biondii HOM05D007420 ORTHO05D009353 1.4e-11 72.8 45 77.8
PGSC0003DMG401011174 Solanum tuberosum HOM05D007420 ORTHO05D009353 4.0e-11 71.2 92 47.8
Os05g0176600 Oryza sativa ssp. japonica HOM05D007420 ORTHO05D009353 3.3e-10 68.2 43 74.4
Glyma.13G033951 Glycine max HOM05D007420 ORTHO05D009353 1.8e-08 62.4 38 73.7
MCO15G341 Micromonas commoda HOM05D007420 ORTHO05D009353 4.5e-07 57.8 46 54.3


User provided reference genes

Program Settings