Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 9.9e-95 350.1 180 100.0
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 1.1e-69 266.9 168 85.1
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 7.7e-55 217.6 170 71.8
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 2.2e-54 216.1 168 70.8
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 3.0e-51 205.7 168 66.7
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 3.9e-51 205.3 163 69.3
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 1.3e-49 200.3 108 96.3
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 1.7e-49 199.9 104 99.0
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 1.2e-39 167.2 173 52.6
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 1.6e-39 166.8 170 55.9
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 1.0e-38 164.1 173 52.6
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 1.0e-38 164.1 172 52.9
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 3.2e-37 159.1 173 50.9
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 3.2e-37 159.1 173 52.6
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 4.2e-37 158.7 167 51.5
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 4.2e-37 158.7 173 52.6
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 7.2e-37 157.9 173 51.4
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 1.6e-36 156.8 173 50.9
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 8.0e-36 154.5 173 49.1
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 8.0e-36 154.5 167 50.9
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 2.3e-35 152.9 167 50.9
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 3.0e-35 152.5 167 50.9
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 8.8e-35 151.0 170 50.0
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 1.2e-34 150.6 173 47.4
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 2.6e-34 149.4 173 49.7
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 2.6e-34 149.4 173 50.9
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 3.4e-34 149.1 167 50.3
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 3.4e-34 149.1 167 50.9
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 4.4e-34 148.7 174 50.0
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 5.7e-34 148.3 173 48.0
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 5.7e-34 148.3 167 50.3
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 7.5e-34 147.9 167 47.9
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 9.8e-34 147.5 167 47.9
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 1.3e-33 147.1 167 51.5
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 2.8e-33 146.0 173 50.3
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 2.8e-33 146.0 173 49.1
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 2.8e-33 146.0 169 47.9
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 4.8e-33 145.2 166 51.2
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 4.8e-33 145.2 173 46.2
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 6.3e-33 144.8 167 49.7
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 6.3e-33 144.8 173 49.7
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.8e-32 143.3 173 48.0
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 1.8e-32 143.3 173 49.1
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 1.8e-32 143.3 173 47.4
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 1.8e-32 143.3 173 49.1
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 2.4e-32 142.9 173 49.1
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 5.4e-32 141.7 173 48.0
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 7.0e-32 141.4 174 47.1
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 3.5e-31 139.0 172 48.3
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 5.9e-31 138.3 173 48.0
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 5.9e-31 138.3 176 46.6
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.0e-30 137.5 175 46.9
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 3.8e-30 135.6 175 45.1
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 6.5e-30 134.8 172 48.3
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 8.6e-30 134.4 167 47.9
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 1.1e-29 134.0 173 46.2
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 5.5e-29 131.7 177 43.5
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 7.2e-29 131.3 167 49.7
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 7.2e-29 131.3 181 43.6
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 9.5e-29 131.0 165 44.8
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 1.2e-28 130.6 130 53.1
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.2e-28 130.6 173 43.9
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 1.6e-28 130.2 167 45.5
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 1.6e-28 130.2 172 44.2
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 1.6e-28 130.2 173 42.2
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 1.6e-28 130.2 167 48.5
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 2.1e-28 129.8 167 46.1
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 4.7e-28 128.6 173 45.7
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 4.7e-28 128.6 175 44.6
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 6.1e-28 128.3 173 45.7
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 6.1e-28 128.3 166 47.0
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 1.4e-27 127.1 144 49.3
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 1.4e-27 127.1 161 46.6
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 1.4e-27 127.1 161 46.6
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 2.3e-27 126.3 167 44.9
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 3.0e-27 125.9 166 44.0
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 5.2e-27 125.2 173 45.7
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 6.8e-27 124.8 177 44.6
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 6.8e-27 124.8 177 44.6
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 6.8e-27 124.8 177 44.6
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 6.8e-27 124.8 175 44.6
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 6.8e-27 124.8 173 44.5
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 8.8e-27 124.4 118 54.2
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 8.8e-27 124.4 167 44.3
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 8.8e-27 124.4 119 56.3
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 1.2e-26 124.0 173 44.5
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 1.2e-26 124.0 173 45.1
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 1.5e-26 123.6 178 42.7
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 1.5e-26 123.6 178 41.6
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 1.5e-26 123.6 167 46.7
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 2.0e-26 123.2 167 45.5
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.4e-26 122.5 161 42.2
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 1.3e-25 120.6 165 44.2
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 1.3e-25 120.6 178 40.4
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 1.7e-25 120.2 208 40.4
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.7e-25 119.0 175 43.4
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 3.7e-25 119.0 167 44.9
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 3.7e-25 119.0 171 42.7
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 4.9e-25 118.6 166 42.8
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 6.3e-25 118.2 173 43.4
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 8.3e-25 117.9 173 39.9
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 1.1e-24 117.5 175 39.4
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 1.4e-24 117.1 167 46.1
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 5.4e-24 115.2 174 40.2
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 5.4e-24 115.2 172 39.5
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 1.2e-23 114.0 166 37.3
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.0e-23 113.2 173 41.0
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 2.7e-23 112.8 166 36.7
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 3.5e-23 112.5 173 41.0
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 1.0e-22 110.9 165 41.2
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.3e-22 110.5 173 40.5
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 1.7e-22 110.2 170 42.4
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 3.8e-22 109.0 170 39.4
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 6.6e-22 108.2 169 40.2
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 1.1e-21 107.5 169 40.2
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 2.5e-21 106.3 169 39.1
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 3.3e-21 105.9 155 42.6
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 5.6e-21 105.1 167 41.9
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 2.8e-20 102.8 167 41.3
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 2.8e-20 102.8 164 40.9
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 6.1e-20 101.7 169 39.6
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 6.1e-20 101.7 169 40.2
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 8.0e-20 101.3 102 55.9
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 3.0e-19 99.4 165 41.8
ECA232G0388 Erigeron canadensis HOM05D003640 ORTHO05D004439 1.2e-18 97.4 72 70.8
ECA233G3458 Erigeron canadensis HOM05D000153 ORTHO05D002648 1.5e-18 97.1 71 71.8
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 2.0e-18 96.7 173 36.4
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.3e-17 94.0 160 36.9
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 2.2e-17 93.2 173 38.7
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 2.4e-16 89.7 146 36.3
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 5.4e-16 88.6 94 53.2
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 3.9e-14 82.4 77 55.8
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 5.0e-14 82.0 102 47.1
ECA234G0451 Erigeron canadensis HOM05D003640 ORTHO05D004439 8.6e-14 81.3 78 57.7
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 9.5e-13 77.8 172 36.6
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 1.1e-11 74.3 149 37.6
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 1.1e-11 74.3 65 58.5
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 2.3e-11 73.2 149 36.9
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 2.3e-11 73.2 149 36.9
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 2.2e-09 66.6 65 52.3
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 6.4e-09 65.1 157 29.3
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 2.4e-08 63.2 184 28.3
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 5.4e-08 62.0 149 34.9
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 5.4e-08 62.0 149 34.9
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 1.6e-07 60.5 149 32.9
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 1.6e-07 60.5 188 28.2
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 1.0e-06 57.8 58 55.2
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 3.9e-06 55.8 126 35.7


User provided reference genes

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