Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0061421 Helianthus annuus HOM05D004971 ORTHO05D006289 2.1e-143 512.3 247 100.0
HanXRQChr09g0239411 Helianthus annuus HOM05D004971 ORTHO05D006289 5.7e-117 424.5 245 84.1
ECA240G1764 Erigeron canadensis HOM05D004971 ORTHO05D006289 1.5e-109 399.8 245 79.2
Lsat_1_v5_gn_7_41360 Lactuca sativa HOM05D004971 ORTHO05D006289 7.7e-98 360.9 245 72.7
Dinv41645 Davidia involucrata HOM05D004971 ORTHO05D006289 1.2e-85 320.5 251 60.2
Rhsim03G0239000 Rhododendron simsii HOM05D004971 ORTHO05D006289 1.7e-81 306.6 245 59.2
Migut.J01131 Erythranthe guttata HOM05D004971 ORTHO05D006289 2.9e-81 305.8 245 58.8
Lalb_Chr05g0223101 Lupinus albus HOM05D004971 ORTHO05D006289 8.6e-81 304.3 252 58.7
Oeu000366.2 Olea europaea HOM05D004971 ORTHO05D006289 2.5e-80 302.8 249 60.6
Glyma.08G035500 Glycine max HOM05D004971 ORTHO05D006289 4.2e-80 302.0 254 58.7
CSS0031404 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 7.2e-80 301.2 251 57.0
CiPaw.03G227700 Carya illinoinensis HOM05D004971 ORTHO05D006289 9.5e-80 300.8 251 58.6
MSTRG.19566 Avicennia marina HOM05D004971 ORTHO05D006289 1.6e-79 300.1 251 57.8
Phvul.002G310900 Phaseolus vulgaris HOM05D004971 ORTHO05D006289 1.6e-79 300.1 253 56.9
VMungo0251G3379 Vigna mungo HOM05D004971 ORTHO05D006289 2.1e-79 299.7 253 57.7
Cc06_g10130 Coffea canephora HOM05D004971 ORTHO05D006289 1.0e-78 297.4 245 59.2
PGR102G0147 Punica granatum HOM05D004971 ORTHO05D006289 6.8e-78 294.7 251 56.6
Oeu017816.1 Olea europaea HOM05D004971 ORTHO05D006289 8.9e-78 294.3 241 59.8
Prupe.7G224700 Prunus persica HOM05D004971 ORTHO05D006289 1.5e-77 293.5 249 55.4
GSVIVG01015340001 Vitis vinifera HOM05D004971 ORTHO05D006289 1.5e-77 293.5 252 57.9
CANSAT56G2306 Cannabis sativa HOM05D004971 ORTHO05D006289 2.0e-77 293.1 251 56.6
CAN.G399.3 Capsicum annuum HOM05D004971 ORTHO05D006289 2.0e-77 293.1 247 57.9
CARHR256940 Cardamine hirsuta HOM05D004971 ORTHO05D006289 3.4e-77 292.4 245 55.1
SGA_v2.0_scaffold20G09148 Striga asiatica HOM05D004971 ORTHO05D006289 5.7e-77 291.6 245 55.1
Atru.chr7.1418 Acer truncatum HOM05D004971 ORTHO05D006289 7.5e-77 291.2 252 57.1
SGA_v2.0_scaffold22G09903 Striga asiatica HOM05D004971 ORTHO05D006289 1.7e-76 290.0 250 54.8
AL8G25390 Arabidopsis lyrata HOM05D004971 ORTHO05D006289 2.2e-76 289.7 249 55.8
AT5G51130 Arabidopsis thaliana HOM05D004971 ORTHO05D006289 2.2e-76 289.7 249 55.8
CANSAT56G1645 Cannabis sativa HOM05D004971 ORTHO05D006289 2.2e-76 289.7 251 56.2
Lj4g0001585 Lotus japonicus HOM05D004971 ORTHO05D006289 2.2e-76 289.7 246 56.1
Nitab4.5_0000066g0130 Nicotiana tabacum HOM05D004971 ORTHO05D006289 2.2e-76 289.7 250 57.6
unitig_748.g8739 Utricularia gibba HOM05D004971 ORTHO05D006289 2.9e-76 289.3 245 55.1
Carub.0008s1117 Capsella rubella HOM05D004971 ORTHO05D006289 4.9e-76 288.5 248 54.4
Thhalv10014188m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 4.9e-76 288.5 245 55.5
Medtr8g102950 Medicago truncatula HOM05D004971 ORTHO05D006289 1.8e-75 286.6 253 54.9
Nitab4.5_0003331g0010 Nicotiana tabacum HOM05D004971 ORTHO05D006289 3.2e-75 285.8 261 55.6
Solyc05g050000.3 Solanum lycopersicum HOM05D004971 ORTHO05D006289 4.1e-75 285.4 250 55.2
vmacro06238 Vaccinium macrocarpon HOM05D004971 ORTHO05D006289 7.0e-75 284.6 298 48.7
Sopen05g028390 Solanum pennellii HOM05D004971 ORTHO05D006289 9.2e-75 284.3 254 55.9
PGSC0003DMG400021659 Solanum tuberosum HOM05D004971 ORTHO05D006289 1.2e-74 283.9 254 56.3
THA.LOC104811095 Tarenaya hassleriana HOM05D004971 ORTHO05D006289 2.0e-74 283.1 252 57.5
RcHm_v2.0_Chr2g0091361 Rosa chinensis HOM05D004971 ORTHO05D006289 2.7e-74 282.7 251 53.0
TPR.G23453 Trifolium pratense HOM05D004971 ORTHO05D006289 3.5e-74 282.3 252 55.6
QL01p004043 Quercus lobata HOM05D004971 ORTHO05D006289 1.3e-73 280.4 247 55.5
MD15G1192600 Malus domestica HOM05D004971 ORTHO05D006289 2.9e-73 279.3 246 54.1
Thecc.09G104800 Theobroma cacao HOM05D004971 ORTHO05D006289 2.9e-73 279.3 250 55.6
arahy.Tifrunner.gnm1.ann1.050WC1 Arachis hypogaea HOM05D004971 ORTHO05D006289 5.0e-73 278.5 261 53.3
COL.COLO4_34800 Corchorus olitorius HOM05D004971 ORTHO05D006289 5.0e-73 278.5 246 56.1
Sp6g13340 Schrenkiella parvula HOM05D004971 ORTHO05D006289 5.0e-73 278.5 250 53.2
Aa31LG3G7640 Aethionema arabicum HOM05D004971 ORTHO05D006289 6.6e-73 278.1 245 53.5
BcaB05g24018 Brassica carinata HOM05D004971 ORTHO05D006289 6.6e-73 278.1 245 53.9
BcaC01g06076 Brassica carinata HOM05D004971 ORTHO05D006289 8.6e-73 277.7 245 53.5
BcaC03g14623 Brassica carinata HOM05D004971 ORTHO05D006289 1.1e-72 277.3 248 53.6
BolC2t08195H Brassica oleracea HOM05D004971 ORTHO05D006289 1.1e-72 277.3 248 53.6
A02p12480 Brassica napus HOM05D004971 ORTHO05D006289 2.5e-72 276.2 250 53.2
BraA02t06311Z Brassica rapa HOM05D004971 ORTHO05D006289 2.5e-72 276.2 250 53.2
C02p20580 Brassica napus HOM05D004971 ORTHO05D006289 3.3e-72 275.8 248 53.6
Eucgr.C03795 Eucalyptus grandis HOM05D004971 ORTHO05D006289 7.3e-72 274.6 252 54.4
Gohir.D07G007800 Gossypium hirsutum HOM05D004971 ORTHO05D006289 3.6e-71 272.3 248 54.4
Gorai.001G007500 Gossypium raimondii HOM05D004971 ORTHO05D006289 3.6e-71 272.3 248 54.4
TAR626G1908 Trochodendron aralioides HOM05D001382 ORTHO05D006289 3.6e-71 272.3 262 52.7
BcaC01g06098 Brassica carinata HOM05D004971 ORTHO05D006289 6.1e-71 271.6 246 53.7
BolC3t14306H Brassica oleracea HOM05D004971 ORTHO05D006289 6.1e-71 271.6 246 53.7
C03p19180 Brassica napus HOM05D004971 ORTHO05D006289 8.0e-71 271.2 246 53.7
TAR636G2606 Trochodendron aralioides HOM05D004971 ORTHO05D006289 8.0e-71 271.2 262 52.3
Lj7A659G31 Lonicera japonica HOM05D004971 ORTHO05D006289 1.8e-70 270.0 219 58.4
FAN28G1806 Fragaria x ananassa HOM05D001382 ORTHO05D006289 2.3e-70 269.6 251 50.6
BraA03t10920Z Brassica rapa HOM05D004971 ORTHO05D006289 4.0e-70 268.9 246 51.6
FvH4_1g05710 Fragaria vesca HOM05D004971 ORTHO05D006289 4.0e-70 268.9 251 51.0
FAN19G1252 Fragaria x ananassa HOM05D001382 ORTHO05D001266 4.0e-70 268.9 249 51.8
FAN26G3039 Fragaria x ananassa HOM05D001382 ORTHO05D001266 4.0e-70 268.9 251 51.0
FAN23G0317 Fragaria x ananassa HOM05D001382 ORTHO05D006289 1.2e-69 267.3 251 50.6
Gohir.A07G004400 Gossypium hirsutum HOM05D004971 ORTHO05D006289 2.0e-69 266.5 246 52.4
A03p16290 Brassica napus HOM05D004971 ORTHO05D006289 3.4e-69 265.8 245 51.4
Actinidia32663 Actinidia chinensis HOM05D004971 ORTHO05D006289 5.8e-69 265.0 251 53.4
Os08g0540500 Oryza sativa ssp. japonica HOM05D004971 ORTHO05D006289 7.5e-69 264.6 240 52.9
arahy.Tifrunner.gnm1.ann1.R8N6MQ Arachis hypogaea HOM05D004971 ORTHO05D006289 1.3e-68 263.8 261 51.0
Nn3g18146 Nelumbo nucifera HOM05D004971 ORTHO05D006289 1.7e-68 263.5 253 54.9
ClCG06G008900 Citrullus lanatus HOM05D004971 ORTHO05D006289 2.2e-68 263.1 241 52.3
Sc08g0007770 Simmondsia chinensis HOM05D004971 ORTHO05D006289 2.9e-68 262.7 247 49.8
Peaxi162Scf00539g00614 Petunia axillaris HOM05D004971 ORTHO05D006289 4.9e-68 261.9 247 53.0
Potri.018G084700 Populus trichocarpa HOM05D004971 ORTHO05D006289 6.4e-68 261.5 247 51.0
CsaV3_1G020790 Cucumis sativus L. HOM05D004971 ORTHO05D006289 1.4e-67 260.4 255 51.0
Psat7g014440 Pisum sativum HOM05D004971 ORTHO05D006289 2.4e-67 259.6 239 53.6
Hund26242 Selenicereus undatus HOM05D004971 ORTHO05D006289 2.4e-67 259.6 246 50.0
Sabra18G0073100 Salix brachista HOM05D004971 ORTHO05D006289 3.2e-67 259.2 244 52.0
TWI12G1172 Tripterygium wilfordii HOM05D004971 ORTHO05D006289 4.1e-67 258.8 248 50.8
AUR62021639 Chenopodium quinoa HOM05D004971 ORTHO05D006289 1.6e-66 256.9 255 51.8
DCAR_028679 Daucus carota HOM05D004971 ORTHO05D006289 4.6e-66 255.4 250 52.0
Aqoxy7G01513 Aquilegia oxysepala HOM05D004971 ORTHO05D006289 6.0e-66 255.0 247 50.2
AUR62008451 Chenopodium quinoa HOM05D004971 ORTHO05D006289 1.7e-65 253.4 255 51.0
PSO675G4950 Papaver somniferum HOM05D004971 ORTHO05D006289 3.3e-64 249.2 247 50.6
PSO541G6366 Papaver somniferum HOM05D004971 ORTHO05D006289 7.3e-64 248.1 246 50.4
Cfa003218 Carpinus fangiana HOM05D001382 ORTHO05D001266 5.2e-62 241.9 217 54.4
SEGI_33858 Sequoiadendron giganteum HOM05D004971 ORTHO05D006289 9.8e-61 237.7 315 41.6
Ciclev10009268m.g Citrus clementina HOM05D004971 ORTHO05D006289 1.3e-60 237.3 246 47.6
HPP92_012900 Vanilla planifolia HOM05D004971 ORTHO05D006289 3.7e-60 235.7 251 47.0
HPP92_012921 Vanilla planifolia HOM05D004971 ORTHO05D006289 6.4e-60 235.0 251 46.6
AagrBONN_evm.TU.Sc2ySwM_117.3390 Anthoceros agrestis HOM05D004971 ORTHO05D006289 7.1e-59 231.5 240 47.1
Sed0000382 Sechium edule HOM05D004971 ORTHO05D006289 3.5e-58 229.2 216 51.9
MELO3C024707.2 Cucumis melo HOM05D004971 ORTHO05D006289 5.1e-57 225.3 236 47.0
SHI02711 Sapria himalayana HOM05D004971 ORTHO05D006289 4.3e-56 222.2 240 47.9
SMO232G0003 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 3.6e-55 219.2 247 43.7
Manes.16G112100 Manihot esculenta HOM05D004971 ORTHO05D006289 1.2e-53 214.2 200 53.5
SMO241G0030 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 3.4e-53 212.6 253 43.5
CSS0049746 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 4.4e-53 212.2 208 52.4
Thhalv10006518m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 6.4e-52 208.4 214 48.1
Thhalv10027230m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 6.4e-52 208.4 214 48.1
Lalb_Chr14g0371731 Lupinus albus HOM05D004971 ORTHO05D006289 3.2e-51 206.1 238 43.3
CDE11G0552 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 4.1e-51 205.7 245 45.3
Mapoly0002s0233 Marchantia polymorpha HOM05D004971 ORTHO05D006289 1.2e-50 204.1 277 37.9
Thhalv10027410m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.0e-49 201.1 214 47.2
Thhalv10026861m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 3.9e-49 199.1 214 47.2
Lalb_Chr24g0397391 Lupinus albus HOM05D004971 ORTHO05D006289 3.6e-47 192.6 186 49.5
Thhalv10027350m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.4e-46 190.7 220 45.5
Duzib150G1337 Durio zibethinus HOM05D004971 ORTHO05D006289 9.9e-45 184.5 170 53.5
Nitab4.5_0002165g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.4e-43 180.6 245 42.9
ATR0315G075 Amborella trichopoda HOM05D004971 ORTHO05D006289 1.2e-42 177.6 207 47.3
MD02G1058100 Malus domestica HOM05D004971 ORTHO05D006289 3.5e-42 176.0 244 38.5
Pp3c17_15270 Physcomitrium patens HOM05D004971 ORTHO05D006289 4.6e-42 175.6 258 35.3
CDE05G3470 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 1.4e-38 164.1 110 67.3
CBR_g687 Chara braunii HOM05D004971 ORTHO05D006289 1.4e-35 154.1 400 27.2
EL10Ac8g18422 Beta vulgaris HOM05D004971 ORTHO05D006289 2.5e-32 143.3 148 48.6
MCO09G154 Micromonas commoda HOM05D004971 ORTHO05D006289 1.6e-31 140.6 274 31.4
Ca_17315_v3 Cicer arietinum L. HOM05D004971 ORTHO05D006289 1.3e-28 131.0 140 48.6
Lj4g0009518 Lotus japonicus HOM05D004971 ORTHO05D006289 7.1e-27 125.2 102 54.9
MBI04_g02609_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D000022 1.2e-26 124.4 147 44.2
Haze_02526 Corylus avellana HOM05D004971 ORTHO05D006289 2.5e-24 116.7 126 48.4
Zm00001eb198370 Zea mays HOM05D004971 ORTHO05D006289 4.3e-24 115.9 141 43.3
Haze_02523 Corylus avellana HOM05D004971 ORTHO05D006289 6.2e-23 112.1 92 59.8
PRCOL_00000240 Prasinoderma coloniale HOM05D004971 ORTHO05D006289 1.1e-22 111.3 302 26.8
Cre15.g636450 Chlamydomonas reinhardtii HOM05D004971 ORTHO05D006289 2.6e-21 106.7 365 25.2
Nitab4.5_0002165g0090 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.2e-18 97.8 57 78.9
arahy.Tifrunner.gnm1.ann1.D57MTL Arachis hypogaea HOM05D004971 ORTHO05D006289 4.6e-18 95.9 137 38.0
arahy.Tifrunner.gnm1.ann1.2J0XRF Arachis hypogaea HOM05D004971 ORTHO05D006289 6.7e-17 92.0 64 60.9
MBI19_g42779_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 3.7e-15 86.3 172 32.0
Lalb_Chr24g0397371 Lupinus albus HOM05D004971 ORTHO05D006289 6.3e-15 85.5 134 39.6
Actinidia07401 Actinidia chinensis HOM05D004971 ORTHO05D006289 2.0e-13 80.5 48 64.6
Nitab4.5_0001706g0070 Nicotiana tabacum HOM05D004971 ORTHO05D006289 5.0e-12 75.9 103 41.7
CSS0032398 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 1.2e-10 71.2 39 71.8
Cpa.g.sc40.24 Carica papaya HOM05D004971 ORTHO05D006289 1.8e-09 67.4 39 66.7
MBI19_g24589_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 6.7e-09 65.5 200 30.0
Nitab4.5_0001706g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 9.7e-08 61.6 30 83.3
CiPaw.05G218700 Carya illinoinensis HOM05D004971 ORTHO05D006289 1.3e-07 61.2 39 64.1
FvH4_7g02480 Fragaria vesca HOM05D004971 ORTHO05D022553 2.2e-07 60.5 41 58.5
FvH4_7g02600 Fragaria vesca HOM05D004971 ORTHO05D022553 2.2e-07 60.5 41 58.5


User provided reference genes

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