Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0061211 Helianthus annuus HOM05D002505 ORTHO05D007115 8.9e-26 119.4 56 100.0
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 3.1e-18 94.4 81 61.7
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 5.4e-15 83.6 81 51.9
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 3.0e-13 77.8 74 54.1
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 1.5e-12 75.5 81 44.4
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 1.5e-12 75.5 81 44.4
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 2.5e-12 74.7 81 45.7
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 3.3e-12 74.3 80 48.8
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 3.3e-12 74.3 81 44.4
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 4.3e-12 73.9 80 43.8
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 9.5e-12 72.8 81 46.9
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 9.5e-12 72.8 81 46.9
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 9.5e-12 72.8 81 46.9
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 9.5e-12 72.8 81 46.9
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 9.5e-12 72.8 81 46.9
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 1.2e-11 72.4 81 40.7
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 1.6e-11 72.0 81 45.7
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 2.1e-11 71.6 81 43.2
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 2.1e-11 71.6 82 41.5
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 2.1e-11 71.6 81 43.2
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 2.8e-11 71.2 81 42.0
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 3.6e-11 70.9 81 43.2
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 4.7e-11 70.5 81 42.0
Atru.chr5.483 Acer truncatum HOM05D002505 ORTHO05D007115 6.2e-11 70.1 81 45.7
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 6.2e-11 70.1 80 42.5
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 8.0e-11 69.7 81 44.4
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 8.0e-11 69.7 81 45.7
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 8.0e-11 69.7 80 46.2
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 1.1e-10 69.3 80 45.0
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 1.1e-10 69.3 81 44.4
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 1.8e-10 68.6 81 43.2
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 1.8e-10 68.6 81 43.2
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 1.8e-10 68.6 81 43.2
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 2.3e-10 68.2 80 42.5
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 2.3e-10 68.2 80 42.5
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 2.3e-10 68.2 79 43.0
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 3.1e-10 67.8 77 50.6
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 3.1e-10 67.8 80 45.0
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 4.0e-10 67.4 81 40.7
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 4.0e-10 67.4 80 41.2
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 5.2e-10 67.0 81 45.7
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 6.8e-10 66.6 81 44.4
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 6.8e-10 66.6 81 44.4
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 8.9e-10 66.2 81 46.9
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 8.9e-10 66.2 80 43.8
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 8.9e-10 66.2 80 45.0
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 8.9e-10 66.2 79 41.8
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 8.9e-10 66.2 81 43.2
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 1.2e-09 65.9 81 43.2
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 1.5e-09 65.5 80 43.8
Potri.001G085800 Populus trichocarpa HOM05D002505 ORTHO05D007115 1.5e-09 65.5 80 45.0
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 2.0e-09 65.1 80 42.5
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 2.0e-09 65.1 80 42.5
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla HOM05D002505 ORTHO05D007115 2.0e-09 65.1 81 42.0
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 2.0e-09 65.1 81 42.0
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 2.0e-09 65.1 81 44.4
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 3.4e-09 64.3 80 43.8
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 3.4e-09 64.3 81 40.7
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 3.4e-09 64.3 77 41.6
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 3.4e-09 64.3 80 41.2
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 3.4e-09 64.3 80 41.2
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 4.4e-09 63.9 81 39.5
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 4.4e-09 63.9 80 41.2
FAN13G3213 Fragaria x ananassa HOM05D002505 ORTHO05D007115 5.8e-09 63.5 81 43.2
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 7.5e-09 63.2 77 39.0
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 9.8e-09 62.8 81 43.2
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 9.8e-09 62.8 81 42.0
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 9.8e-09 62.8 80 40.0
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 9.8e-09 62.8 81 39.5
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 1.3e-08 62.4 81 42.0
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 1.3e-08 62.4 81 38.3
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 1.3e-08 62.4 81 39.5
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 1.3e-08 62.4 81 43.2
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 1.3e-08 62.4 81 40.7
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 1.3e-08 62.4 82 42.7
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 1.7e-08 62.0 81 40.7
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 1.7e-08 62.0 81 38.3
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 1.7e-08 62.0 79 40.5
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 2.2e-08 61.6 81 38.3
RcHm_v2.0_Chr7g0184121 Rosa chinensis HOM05D002505 ORTHO05D007115 2.2e-08 61.6 80 42.5
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 2.2e-08 61.6 80 41.2
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 2.9e-08 61.2 81 38.3
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 2.9e-08 61.2 80 40.0
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 2.9e-08 61.2 80 38.8
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 3.7e-08 60.8 80 38.8
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 4.9e-08 60.5 81 38.3
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 6.4e-08 60.1 81 39.5
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 1.1e-07 59.3 80 38.8
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 1.4e-07 58.9 73 42.5
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 1.4e-07 58.9 74 41.9
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 1.4e-07 58.9 79 39.2
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 1.4e-07 58.9 74 41.9
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 1.9e-07 58.5 75 41.3
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.9e-07 58.5 78 42.3
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 2.4e-07 58.2 73 42.5
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 3.2e-07 57.8 73 41.1
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 4.1e-07 57.4 73 41.1
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 4.1e-07 57.4 73 41.1
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 4.1e-07 57.4 81 37.0
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 5.4e-07 57.0 80 40.0
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 7.0e-07 56.6 73 41.1
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 7.0e-07 56.6 73 39.7
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 7.0e-07 56.6 79 40.5
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 7.0e-07 56.6 79 40.5
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 9.2e-07 56.2 78 38.5
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 1.2e-06 55.8 74 40.5


User provided reference genes

Program Settings