Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0060731 Helianthus annuus HOM05D005696 ORTHO05D007099 4.8e-85 317.8 158 100.0
ECA240G0707 Erigeron canadensis HOM05D005696 ORTHO05D007099 1.4e-68 263.1 158 79.1
Lsat_1_v5_gn_7_37701 Lactuca sativa HOM05D005696 ORTHO05D007099 2.4e-68 262.3 158 79.7
HanXRQChr07g0189921 Helianthus annuus HOM05D005696 ORTHO05D007099 1.2e-67 260.0 157 80.3
Sed0022063 Sechium edule HOM05D005696 ORTHO05D007099 7.2e-65 250.8 156 74.4
GSVIVG01033843001 Vitis vinifera HOM05D005696 ORTHO05D007099 7.2e-65 250.8 158 72.8
CSS0033781 Camellia sinensis var. sinensis HOM05D005696 ORTHO05D007099 1.2e-64 250.0 155 76.8
Dinv21209 Davidia involucrata HOM05D005696 ORTHO05D007099 2.1e-64 249.2 158 74.1
Thecc.05G089100 Theobroma cacao HOM05D005696 ORTHO05D007099 2.7e-64 248.8 158 72.2
PGR142G1689 Punica granatum HOM05D005696 ORTHO05D007099 1.4e-63 246.5 158 72.2
Oeu017678.1 Olea europaea HOM05D005696 ORTHO05D007099 1.8e-63 246.1 158 74.1
Oeu017679.1 Olea europaea HOM05D005696 ORTHO05D007099 1.8e-63 246.1 158 74.1
Gorai.002G158300 Gossypium raimondii HOM05D005696 ORTHO05D007099 2.3e-63 245.7 158 72.2
Gohir.D01G127700 Gossypium hirsutum HOM05D005696 ORTHO05D007099 5.1e-63 244.6 158 72.2
Lj2P1003T8 Lonicera japonica HOM05D005696 ORTHO05D007099 6.7e-63 244.2 158 72.8
COL.COLO4_29734 Corchorus olitorius HOM05D005696 ORTHO05D007099 8.8e-63 243.8 158 70.3
SGA_v2.0_scaffold75G24749 Striga asiatica HOM05D005696 ORTHO05D007099 8.8e-63 243.8 158 71.5
Duzib106G0894 Durio zibethinus HOM05D005696 ORTHO05D007099 1.1e-62 243.4 158 72.2
Hma1.2p1_0084F.1_g043820 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 1.1e-62 243.4 158 73.4
Hma1.2p1_0820F.1_g223835 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 1.1e-62 243.4 158 73.4
Sopen09g004540 Solanum pennellii HOM05D005696 ORTHO05D007099 1.1e-62 243.4 152 74.3
DCAR_007752 Daucus carota HOM05D005696 ORTHO05D007099 1.5e-62 243.0 158 72.2
CsaV3_3G037280 Cucumis sativus L. HOM05D005696 ORTHO05D007099 2.6e-62 242.3 156 73.1
MSTRG.19260 Avicennia marina HOM05D005696 ORTHO05D007099 4.4e-62 241.5 158 69.6
ClCG10G018970 Citrullus lanatus HOM05D005696 ORTHO05D007099 4.4e-62 241.5 156 73.1
Sc02g0000250 Simmondsia chinensis HOM05D005696 ORTHO05D007099 4.4e-62 241.5 154 75.3
QL07p038757 Quercus lobata HOM05D005696 ORTHO05D007099 5.7e-62 241.1 157 70.7
QL07p039009 Quercus lobata HOM05D005696 ORTHO05D007099 5.7e-62 241.1 157 70.7
DCAR_013385 Daucus carota HOM05D005696 ORTHO05D007099 7.4e-62 240.7 158 72.2
MELO3C009473.2 Cucumis melo HOM05D005696 ORTHO05D007099 9.7e-62 240.4 156 73.7
Atru.chr8.1538 Acer truncatum HOM05D005696 ORTHO05D007099 1.3e-61 240.0 158 69.6
Gohir.A01G138000 Gossypium hirsutum HOM05D005696 ORTHO05D007099 1.3e-61 240.0 158 70.3
Manes.08G025300 Manihot esculenta HOM05D005696 ORTHO05D007099 1.3e-61 240.0 158 70.9
CiPaw.09G014000 Carya illinoinensis HOM05D005696 ORTHO05D007099 1.7e-61 239.6 158 70.9
Nitab4.5_0000794g0110 Nicotiana tabacum HOM05D005696 ORTHO05D007099 1.7e-61 239.6 158 71.5
Lj2P137T17 Lonicera japonica HOM05D005696 ORTHO05D007099 2.2e-61 239.2 158 72.8
PGSC0003DMG400008956 Solanum tuberosum HOM05D005696 ORTHO05D007099 2.2e-61 239.2 152 73.0
Solyc09g009780.4 Solanum lycopersicum HOM05D005696 ORTHO05D007099 3.7e-61 238.4 152 73.0
arahy.Tifrunner.gnm1.ann1.NXU1NB Arachis hypogaea HOM05D005696 ORTHO05D007099 4.8e-61 238.0 156 72.4
Sed0001709 Sechium edule HOM05D005696 ORTHO05D007099 4.8e-61 238.0 156 69.9
MD06G1040400 Malus domestica HOM05D005696 ORTHO05D007099 8.2e-61 237.3 149 74.5
Nn2g14158 Nelumbo nucifera HOM05D005696 ORTHO05D007099 8.2e-61 237.3 153 72.5
Potri.018G086400 Populus trichocarpa HOM05D005696 ORTHO05D007099 8.2e-61 237.3 149 73.2
Sabra18G0074700 Salix brachista HOM05D005696 ORTHO05D007099 8.2e-61 237.3 147 72.8
TAR374G1347 Trochodendron aralioides HOM05D005696 ORTHO05D007099 8.2e-61 237.3 153 72.5
CAN.G397.49 Capsicum annuum HOM05D005696 ORTHO05D007099 1.1e-60 236.9 149 73.2
CANSAT80G0528 Cannabis sativa HOM05D005696 ORTHO05D007099 1.4e-60 236.5 158 72.2
Rhsim03G0075100 Rhododendron simsii HOM05D005696 ORTHO05D007099 1.8e-60 236.1 155 73.5
Ca_09006_v3 Cicer arietinum L. HOM05D005696 ORTHO05D007099 2.4e-60 235.7 152 71.7
Eucgr.K02040 Eucalyptus grandis HOM05D005696 ORTHO05D007099 2.4e-60 235.7 146 74.0
Medtr7g104610 Medicago truncatula HOM05D005696 ORTHO05D007099 2.4e-60 235.7 152 72.4
AUR62028517 Chenopodium quinoa HOM05D005696 ORTHO05D007099 3.1e-60 235.3 150 71.3
Ciclev10012817m.g Citrus clementina HOM05D005696 ORTHO05D007099 4.1e-60 235.0 158 69.0
TPR.G22495 Trifolium pratense HOM05D005696 ORTHO05D007099 4.1e-60 235.0 152 73.0
Cc03_g11090 Coffea canephora HOM05D005696 ORTHO05D007099 9.1e-60 233.8 150 71.3
SalBow3G1016 Salvia bowleyana HOM05D005696 ORTHO05D007099 9.1e-60 233.8 156 70.5
TPR.G19517 Trifolium pratense HOM05D005696 ORTHO05D007099 9.1e-60 233.8 152 73.0
Ah.01g020980 Amaranthus hybridus HOM05D005696 ORTHO05D007099 1.2e-59 233.4 149 73.2
TWI53G1247 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 1.2e-59 233.4 149 71.8
Aa31LG5G12820 Aethionema arabicum HOM05D005696 ORTHO05D007099 1.6e-59 233.0 156 71.2
Hma1.2p1_0232F.1_g097930 Hydrangea macrophylla HOM05D005696 ORTHO05D007099 1.6e-59 233.0 149 71.8
Cfa016607 Carpinus fangiana HOM05D005696 ORTHO05D007099 2.0e-59 232.6 158 69.0
EL10Ac7g16916 Beta vulgaris HOM05D005696 ORTHO05D007099 2.6e-59 232.3 148 73.6
SalBow6G6426 Salvia bowleyana HOM05D005696 ORTHO05D007099 2.6e-59 232.3 158 69.0
Haze_19611 Corylus avellana HOM05D005696 ORTHO05D007099 7.7e-59 230.7 158 69.0
Rhsim03G0187900 Rhododendron simsii HOM05D005696 ORTHO05D007099 2.2e-58 229.2 148 70.9
unitig_744.g24697 Utricularia gibba HOM05D001616 ORTHO05D007099 2.9e-58 228.8 150 69.3
THA.LOC104820979 Tarenaya hassleriana HOM05D005696 ORTHO05D007099 8.5e-58 227.3 156 69.9
Lalb_Chr01g0018151 Lupinus albus HOM05D005696 ORTHO05D007099 1.9e-57 226.1 147 72.1
Aqoxy2G01202 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 3.2e-57 225.3 145 71.0
Aqoxy1G00460 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 4.2e-57 224.9 148 68.9
TPR.G30027 Trifolium pratense HOM05D005696 ORTHO05D007099 7.2e-57 224.2 152 68.4
RcHm_v2.0_Chr3g0473671 Rosa chinensis HOM05D005696 ORTHO05D007099 9.4e-57 223.8 152 69.7
MD14G1023000 Malus domestica HOM05D005696 ORTHO05D007099 1.2e-56 223.4 152 70.4
Psat3g033280 Pisum sativum HOM05D005696 ORTHO05D007099 1.2e-56 223.4 150 70.0
Cpa.g.sc5.19 Carica papaya HOM05D005696 ORTHO05D007099 2.7e-56 222.2 152 68.4
FvH4_6g18700 Fragaria vesca HOM05D005696 ORTHO05D007099 3.6e-56 221.9 152 69.1
TWI77G0870 Tripterygium wilfordii HOM05D005696 ORTHO05D007099 3.6e-56 221.9 155 66.5
VMungo1383G2828 Vigna mungo HOM05D005696 ORTHO05D007099 8.0e-56 220.7 148 70.9
Phvul.001G189800 Phaseolus vulgaris HOM05D005696 ORTHO05D007099 1.4e-55 219.9 150 70.0
FAN14G5868 Fragaria x ananassa HOM05D005696 ORTHO05D007099 1.8e-55 219.5 152 68.4
FAN05G4755 Fragaria x ananassa HOM05D005696 ORTHO05D007099 2.3e-55 219.2 152 68.4
Glyma.03G195900 Glycine max HOM05D005696 ORTHO05D007099 2.3e-55 219.2 150 68.7
Glyma.19G194929 Glycine max HOM05D005696 ORTHO05D007099 2.3e-55 219.2 155 66.5
MBI04_g14262_MAGBIO Magnolia biondii HOM05D005696 ORTHO05D007099 8.8e-55 217.2 143 69.2
AL6G26610 Arabidopsis lyrata HOM05D005696 ORTHO05D007099 1.5e-54 216.5 148 69.6
Carub.0006s1392 Capsella rubella HOM05D005696 ORTHO05D007099 1.5e-54 216.5 146 70.5
CiPaw.10G009800 Carya illinoinensis HOM05D005696 ORTHO05D007099 2.6e-54 215.7 135 74.1
Prupe.7G110200 Prunus persica HOM05D005696 ORTHO05D007099 7.5e-54 214.2 146 69.2
AT5G15770 Arabidopsis thaliana HOM05D005696 ORTHO05D007099 1.3e-53 213.4 146 68.5
Aa31LG11G13810 Aethionema arabicum HOM05D005696 ORTHO05D007099 4.8e-53 211.5 150 68.7
Thhalv10014892m.g Eutrema salsugineum HOM05D005696 ORTHO05D007099 8.2e-53 210.7 155 67.1
SHI28289 Sapria himalayana HOM05D005696 ORTHO05D007099 1.1e-52 210.3 142 67.6
C09p61330 Brassica napus HOM05D005696 ORTHO05D007099 5.3e-52 208.0 154 64.3
BolC9t58974H Brassica oleracea HOM05D005696 ORTHO05D007099 5.3e-52 208.0 155 65.8
A10p23260 Brassica napus HOM05D005696 ORTHO05D007099 7.0e-52 207.6 154 63.6
BraA10t44394Z Brassica rapa HOM05D005696 ORTHO05D007099 9.1e-52 207.2 154 63.6
Sp6g28350 Schrenkiella parvula HOM05D005696 ORTHO05D007099 9.1e-52 207.2 154 64.3
PSO339G3505 Papaver somniferum HOM05D005696 ORTHO05D007099 2.0e-51 206.1 147 64.6
A02p03210 Brassica napus HOM05D005696 ORTHO05D007099 5.9e-51 204.5 154 62.3
C02p07960 Brassica napus HOM05D005696 ORTHO05D007099 7.7e-51 204.1 154 63.0
BraA02t05292Z Brassica rapa HOM05D005696 ORTHO05D007099 7.7e-51 204.1 154 62.3
PSO384G1553 Papaver somniferum HOM05D005696 ORTHO05D007099 1.3e-50 203.4 148 63.5
BcaC03g18448 Brassica carinata HOM05D005696 ORTHO05D007099 1.5e-49 199.9 154 61.7
BolC2t06719H Brassica oleracea HOM05D005696 ORTHO05D007099 1.5e-49 199.9 154 61.7
CARHR197560 Cardamine hirsuta HOM05D005696 ORTHO05D007099 1.5e-49 199.9 146 65.1
BcaNung02203 Brassica carinata HOM05D005696 ORTHO05D007099 3.2e-49 198.7 155 61.9
Dinv31687 Davidia involucrata HOM05D005696 ORTHO05D010438 5.5e-49 198.0 127 74.0
ATR0618G201 Amborella trichopoda HOM05D005696 ORTHO05D007099 1.0e-47 193.7 144 62.5
SEGI_17930 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 3.0e-47 192.2 151 57.0
BcaC04g18939 Brassica carinata HOM05D005696 ORTHO05D007099 2.6e-46 189.1 154 60.4
HPP92_015765 Vanilla planifolia HOM05D005696 ORTHO05D007099 2.6e-46 189.1 153 57.5
Peaxi162Scf00006g00016 Petunia axillaris HOM05D005696 ORTHO05D007099 1.1e-44 183.7 124 71.0
ATR0605G169 Amborella trichopoda HOM05D005696 ORTHO05D007099 1.8e-44 183.0 145 57.9
AagrBONN_evm.TU.Sc2ySwM_344.341 Anthoceros agrestis HOM05D005696 ORTHO05D007099 9.5e-41 170.6 149 56.4
FAN09G4491 Fragaria x ananassa HOM05D005696 ORTHO05D007099 5.2e-39 164.9 121 64.5
Os09g0488000 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 3.4e-38 162.2 155 49.0
Zm00001eb189250 Zea mays HOM05D005696 ORTHO05D007099 3.4e-38 162.2 144 54.2
Migut.C00979 Erythranthe guttata HOM05D005696 ORTHO05D007099 7.5e-38 161.0 99 77.8
Os02g0717700 Oryza sativa ssp. japonica HOM05D005696 ORTHO05D007099 1.3e-37 160.2 145 55.9
SMO364G0918 Selaginella moellendorffii HOM05D005696 ORTHO05D007099 1.7e-37 159.8 131 58.0
Mapoly0046s0019 Marchantia polymorpha HOM05D005696 ORTHO05D007099 3.7e-37 158.7 144 54.2
Peaxi162Scf00068g02511 Petunia axillaris HOM05D005696 ORTHO05D007099 3.7e-37 158.7 111 68.5
Aqoxy5G03051 Aquilegia oxysepala HOM05D005696 ORTHO05D007099 1.2e-32 143.7 100 64.0
MCO13G065 Micromonas commoda HOM05D005696 ORTHO05D007099 8.0e-32 141.0 143 53.1
VMungo0540G0323 Vigna mungo HOM05D005696 ORTHO05D007099 5.2e-31 138.3 135 54.8
Cre12.g560200 Chlamydomonas reinhardtii HOM05D005696 ORTHO05D007099 2.6e-30 136.0 145 51.0
SEGI_26718 Sequoiadendron giganteum HOM05D005696 ORTHO05D007099 6.4e-29 131.3 100 59.0
PRCOL_00001568 Prasinoderma coloniale HOM05D005696 ORTHO05D007099 2.4e-28 129.4 141 51.1
CBR_g37710 Chara braunii HOM05D005696 ORTHO05D007099 4.0e-23 112.1 142 43.0
VMungo1383G2413 Vigna mungo HOM05D005696 ORTHO05D007099 4.4e-22 108.6 150 40.7
Pp3c14_20090 Physcomitrium patens HOM05D005696 ORTHO05D007099 3.2e-20 102.4 86 55.8
AagrBONN_evm.TU.Sc2ySwM_362.2223 Anthoceros agrestis HOM05D005696 ORTHO05D007099 1.6e-19 100.1 84 52.4
MD12G1036200 Malus domestica HOM05D005696 ORTHO05D007099 3.9e-18 95.5 90 53.3


User provided reference genes

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