Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 1.1e-167 593.2 295 100.0
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 9.4e-159 563.5 280 100.0
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 7.7e-153 543.9 280 97.1
HanXRQChr03g0061101 Helianthus annuus HOM05D006588 ORTHO05D008272 3.4e-100 369.0 288 70.8
HanXRQChr03g0060991 Helianthus annuus HOM05D006588 ORTHO05D008272 8.6e-96 354.4 296 65.5
HanXRQChr03g0060961 Helianthus annuus HOM05D006588 ORTHO05D008272 7.3e-95 351.3 296 66.9
HanXRQChr03g0060631 Helianthus annuus HOM05D006588 ORTHO05D008272 5.6e-87 325.1 292 65.1
HanXRQChr05g0142321 Helianthus annuus HOM05D006588 ORTHO05D008272 2.4e-82 309.7 303 58.4
Lsat_1_v5_gn_7_39041 Lactuca sativa HOM05D006588 ORTHO05D008272 7.3e-71 271.6 325 50.8
HanXRQChr09g0238251 Helianthus annuus HOM05D006588 ORTHO05D008272 2.6e-68 263.1 321 48.0
ECA240G3150 Erigeron canadensis HOM05D006588 ORTHO05D008272 9.9e-68 261.2 315 48.3
HanXRQChr03g0060621 Helianthus annuus HOM05D006588 ORTHO05D008272 2.3e-64 250.0 228 63.6
Lsat_1_v5_gn_7_38281 Lactuca sativa HOM05D006588 ORTHO05D008272 1.7e-59 233.8 318 48.1
Cc06_g10980 Coffea canephora HOM05D006588 ORTHO05D008272 6.2e-54 215.3 322 41.6
CSS0027625 Camellia sinensis var. sinensis HOM05D006588 ORTHO05D008272 1.4e-53 214.2 313 41.2
Lsat_1_v5_gn_7_38040 Lactuca sativa HOM05D006588 ORTHO05D008272 2.4e-53 213.4 319 43.3
MSTRG.10583 Avicennia marina HOM05D006588 ORTHO05D008272 5.8e-52 208.8 313 41.5
Lj4C316T0 Lonicera japonica HOM05D006588 ORTHO05D008272 1.0e-51 208.0 312 41.0
Migut.K00574 Erythranthe guttata HOM05D006588 ORTHO05D008272 1.3e-51 207.6 315 42.5
Lsat_1_v5_gn_7_37981 Lactuca sativa HOM05D006588 ORTHO05D008272 1.7e-51 207.2 318 41.8
Lsat_1_v5_gn_7_38001 Lactuca sativa HOM05D006588 ORTHO05D008272 1.7e-51 207.2 318 41.8
Dinv36733 Davidia involucrata HOM05D006588 ORTHO05D008272 2.9e-51 206.5 312 41.0
Hma1.2p1_1074F.1_g254320 Hydrangea macrophylla HOM05D006588 ORTHO05D008272 2.5e-50 203.4 321 40.2
Lsat_1_v5_gn_7_38780 Lactuca sativa HOM05D006588 ORTHO05D008272 2.5e-50 203.4 338 41.1
SalBow1G2363 Salvia bowleyana HOM05D006588 ORTHO05D008272 1.6e-49 200.7 313 41.5
SalBow1G2795 Salvia bowleyana HOM05D006588 ORTHO05D008272 1.6e-49 200.7 313 41.5
Oeu018228.1 Olea europaea HOM05D006588 ORTHO05D008272 2.1e-49 200.3 324 39.5
Rhsim05G0031800 Rhododendron simsii HOM05D006588 ORTHO05D008272 2.3e-48 196.8 320 40.3
Gohir.A06G070700 Gossypium hirsutum HOM05D006588 ORTHO05D008272 6.7e-48 195.3 311 40.2
Gohir.D06G069300 Gossypium hirsutum HOM05D006588 ORTHO05D008272 6.7e-48 195.3 311 40.2
Gorai.010G080900 Gossypium raimondii HOM05D006588 ORTHO05D008272 6.7e-48 195.3 311 40.2
Cfa003132 Carpinus fangiana HOM05D006588 ORTHO05D008272 1.5e-47 194.1 312 38.5
QL02p063459 Quercus lobata HOM05D006588 ORTHO05D008272 1.9e-47 193.7 314 38.2
Atru.chr7.1520 Acer truncatum HOM05D006588 ORTHO05D008272 3.3e-47 193.0 319 38.6
Manes.03G030400 Manihot esculenta HOM05D006588 ORTHO05D008272 3.7e-46 189.5 312 39.7
unitig_699.g19309 Utricularia gibba HOM05D006588 ORTHO05D008272 3.7e-46 189.5 312 38.1
Thecc.09G094100 Theobroma cacao HOM05D006588 ORTHO05D008272 4.8e-46 189.1 312 38.5
TAR636G2459 Trochodendron aralioides HOM05D006588 ORTHO05D008272 4.8e-46 189.1 312 38.8
Lsat_1_v5_gn_7_38020 Lactuca sativa HOM05D006588 ORTHO05D008272 3.1e-45 186.4 359 37.9
Duzib150G1363 Durio zibethinus HOM05D006588 ORTHO05D008272 5.3e-45 185.7 312 38.1
Nn6g35407 Nelumbo nucifera HOM05D006588 ORTHO05D008272 9.0e-45 184.9 314 36.9
CiPaw.03G219600 Carya illinoinensis HOM05D006588 ORTHO05D008272 2.6e-44 183.3 312 38.1
TWI34G1517 Tripterygium wilfordii HOM05D006588 ORTHO05D008272 4.5e-44 182.6 295 39.3
CANSAT56G2228 Cannabis sativa HOM05D006588 ORTHO05D008272 1.9e-42 177.2 323 34.7
Sc15g0003870 Simmondsia chinensis HOM05D006588 ORTHO05D008272 1.9e-42 177.2 314 37.3
CANSAT56G3648 Cannabis sativa HOM05D006588 ORTHO05D008272 2.5e-42 176.8 323 34.4
Sp7g27300 Schrenkiella parvula HOM05D006588 ORTHO05D008272 2.5e-42 176.8 293 36.9
CANSAT56G0790 Cannabis sativa HOM05D006588 ORTHO05D008272 3.2e-42 176.4 323 34.4
Ciclev10008264m.g Citrus clementina HOM05D006588 ORTHO05D008272 4.2e-42 176.0 314 36.3
vmacro10821 Vaccinium macrocarpon HOM05D006588 ORTHO05D008272 7.2e-42 175.3 352 36.6
AT4G29420 Arabidopsis thaliana HOM05D006588 ORTHO05D008272 2.3e-40 170.2 293 35.5
A01p08610 Brassica napus HOM05D006588 ORTHO05D008272 3.0e-40 169.9 293 36.2
Lalb_Chr09g0331761 Lupinus albus HOM05D006588 ORTHO05D008272 3.0e-40 169.9 312 37.8
SGA_v2.0_scaffold28G11949 Striga asiatica HOM05D006588 ORTHO05D008272 3.9e-40 169.5 345 35.7
Carub.0007s1112 Capsella rubella HOM05D006588 ORTHO05D008272 2.0e-39 167.2 292 36.0
MBI04_g06220_MAGBIO Magnolia biondii HOM05D006588 ORTHO05D008272 2.0e-39 167.2 315 36.2
Thhalv10025196m.g Eutrema salsugineum HOM05D006588 ORTHO05D008272 4.3e-39 166.0 293 35.5
BraA01t00812Z Brassica rapa HOM05D006588 ORTHO05D008272 9.7e-39 164.9 269 37.9
THA.LOC104814599 Tarenaya hassleriana HOM05D006588 ORTHO05D008272 1.3e-38 164.5 309 35.6
C01p10080 Brassica napus HOM05D006588 ORTHO05D008272 2.8e-38 163.3 293 35.2
BolC1t00966H Brassica oleracea HOM05D006588 ORTHO05D008272 4.8e-38 162.5 293 34.8
CDE06G2665 Ceratophyllum demersum HOM05D006588 ORTHO05D008272 8.2e-38 161.8 322 33.2
Eucgr.C00929 Eucalyptus grandis HOM05D006588 ORTHO05D008272 8.2e-38 161.8 320 37.2
ClCG11G012860 Citrullus lanatus HOM05D006588 ORTHO05D008272 1.4e-37 161.0 314 34.1
TPR.G25442 Trifolium pratense HOM05D006588 ORTHO05D008272 1.4e-37 161.0 326 34.7
CARHR237240 Cardamine hirsuta HOM05D006588 ORTHO05D008272 2.4e-37 160.2 272 36.8
Lj4g0006334 Lotus japonicus HOM05D006588 ORTHO05D008272 3.1e-37 159.8 304 35.5
AL7G22970 Arabidopsis lyrata HOM05D006588 ORTHO05D008272 4.1e-37 159.5 270 35.6
Aa31LG2G21010 Aethionema arabicum HOM05D006588 ORTHO05D008272 6.9e-37 158.7 292 36.6
Glyma.08G030700 Glycine max HOM05D006588 ORTHO05D008272 6.9e-37 158.7 312 36.5
Phvul.002G305400 Phaseolus vulgaris HOM05D006588 ORTHO05D008272 9.1e-37 158.3 306 36.3
VMungo0251G0425 Vigna mungo HOM05D006588 ORTHO05D008272 1.5e-36 157.5 313 35.8
Sed0004057 Sechium edule HOM05D006588 ORTHO05D008272 4.5e-36 156.0 314 35.4
Psat7g018800 Pisum sativum HOM05D006588 ORTHO05D008272 7.7e-36 155.2 307 35.5
CsaV3_5G029260 Cucumis sativus L. HOM05D006588 ORTHO05D008272 1.7e-35 154.1 314 34.1
Ca_17389_v3 Cicer arietinum L. HOM05D006588 ORTHO05D008272 5.0e-35 152.5 326 33.7
HanXRQChr03g0061001 Helianthus annuus HOM05D006588 ORTHO05D008272 2.5e-34 150.2 147 59.9
Lsat_1_v5_gn_7_38181 Lactuca sativa HOM05D006588 ORTHO05D008272 1.6e-33 147.5 297 39.4
ATR0789G046 Amborella trichopoda HOM05D006588 ORTHO05D008272 2.3e-32 143.7 312 33.7
HPP92_003983 Vanilla planifolia HOM05D006588 ORTHO05D008272 1.3e-30 137.9 323 30.7
Nn7g36587 Nelumbo nucifera HOM05D006588 ORTHO05D008272 3.7e-30 136.3 210 37.6
SEGI_25649 Sequoiadendron giganteum HOM05D006588 ORTHO05D008272 3.8e-27 126.3 295 30.5
Actinidia25278 Actinidia chinensis HOM05D006588 ORTHO05D008272 1.5e-26 124.4 193 40.4
Actinidia39746 Actinidia chinensis HOM05D006588 ORTHO05D008272 5.5e-26 122.5 193 41.5
Rhsim05G0031700 Rhododendron simsii HOM05D006588 ORTHO05D008272 1.2e-25 121.3 260 32.3
Rhsim05G0031600 Rhododendron simsii HOM05D006588 ORTHO05D008272 3.6e-25 119.8 161 45.3
Haze_25873 Corylus avellana HOM05D006588 ORTHO05D008272 4.7e-25 119.4 160 42.5
Medtr8g101930 Medicago truncatula HOM05D006588 ORTHO05D008272 2.3e-24 117.1 263 31.6
Eucgr.L03123 Eucalyptus grandis HOM05D006588 ORTHO05D008272 3.0e-24 116.7 214 36.4
Zm00001eb121140 Zea mays HOM05D006588 ORTHO05D008272 2.0e-23 114.0 328 29.6
Lsat_1_v5_gn_7_39080 Lactuca sativa HOM05D006588 ORTHO05D008272 5.3e-21 105.9 180 43.9
Os01g0193500 Oryza sativa ssp. japonica HOM05D006588 ORTHO05D008272 7.0e-21 105.5 155 41.9
CANSAT56G3251 Cannabis sativa HOM05D006588 ORTHO05D008272 3.2e-18 96.7 150 36.7
AagrBONN_evm.TU.Sc2ySwM_228.3249 Anthoceros agrestis HOM05D006588 ORTHO05D008272 1.6e-17 94.4 307 27.7
Duzib168G2000 Durio zibethinus HOM05D006588 ORTHO05D002622 3.6e-17 93.2 179 34.6
COL.COLO4_18239 Corchorus olitorius HOM05D006588 ORTHO05D008272 2.3e-16 90.5 298 26.8
BcaC09g51727 Brassica carinata HOM05D006588 ORTHO05D008272 6.8e-16 89.0 143 36.4
MELO3C011777.2 Cucumis melo HOM05D006588 ORTHO05D008272 1.5e-15 87.8 159 36.5
Mapoly0117s0028 Marchantia polymorpha HOM05D006588 ORTHO05D008272 4.8e-14 82.8 308 24.4
SalBow8G2706 Salvia bowleyana HOM05D000076 ORTHO05D013329 5.3e-13 79.3 115 43.5
Mapoly0029s0113 Marchantia polymorpha HOM05D006588 ORTHO05D008272 1.2e-12 78.2 332 23.8
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 4.2e-10 69.7 240 27.5
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 4.7e-09 66.2 237 27.0
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 8.0e-09 65.5 235 28.1
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 2.3e-08 63.9 245 27.3
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 3.0e-08 63.5 240 26.7
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 3.0e-08 63.5 237 29.5
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 4.0e-08 63.2 240 26.7
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 4.0e-08 63.2 240 28.3
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 4.0e-08 63.2 238 28.6
Pp3c21_900 Physcomitrium patens HOM05D006588 ORTHO05D008272 4.0e-08 63.2 276 21.0
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 4.0e-08 63.2 239 27.2
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 5.2e-08 62.8 240 26.7
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 5.2e-08 62.8 241 27.4
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 8.8e-08 62.0 239 26.4
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 8.8e-08 62.0 238 29.0
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 8.8e-08 62.0 238 29.0
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 8.8e-08 62.0 238 25.6
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 8.8e-08 62.0 239 28.5
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 8.8e-08 62.0 240 27.5
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 1.2e-07 61.6 240 29.2
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 1.2e-07 61.6 239 27.2
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 1.5e-07 61.2 238 28.2
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 1.5e-07 61.2 236 27.1
Pp3c21_980 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.5e-07 61.2 274 20.1
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 2.0e-07 60.8 239 28.0
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 2.6e-07 60.5 238 27.7
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 2.6e-07 60.5 260 26.9
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 3.4e-07 60.1 257 26.8
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 4.4e-07 59.7 240 27.5
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 4.4e-07 59.7 240 27.5
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 5.7e-07 59.3 239 26.8
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 5.7e-07 59.3 246 27.6
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 5.7e-07 59.3 240 27.5
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 5.7e-07 59.3 239 28.0
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 7.5e-07 58.9 245 26.9
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 7.5e-07 58.9 238 27.3
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 9.8e-07 58.5 245 25.7
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 9.8e-07 58.5 239 26.8
unitig_699.g19307 Utricularia gibba HOM05D006588 ORTHO05D008272 9.8e-07 58.5 120 34.2
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 9.8e-07 58.5 239 25.1
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 1.3e-06 58.2 238 25.6
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 1.7e-06 57.8 247 27.1
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 1.7e-06 57.8 239 25.9
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.7e-06 57.8 240 26.7
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 1.7e-06 57.8 239 25.1
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 2.2e-06 57.4 240 25.4
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 2.2e-06 57.4 246 27.2
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 2.2e-06 57.4 238 26.5
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 2.2e-06 57.4 262 26.3
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 2.8e-06 57.0 257 27.2
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 2.8e-06 57.0 238 25.2
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 2.8e-06 57.0 240 28.8
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 2.8e-06 57.0 240 27.5
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 2.8e-06 57.0 245 26.5
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 3.7e-06 56.6 240 25.4
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 3.7e-06 56.6 240 26.7
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 3.7e-06 56.6 239 27.6
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 3.7e-06 56.6 239 25.9
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 4.8e-06 56.2 240 26.2
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 4.8e-06 56.2 238 25.6
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 4.8e-06 56.2 237 27.4
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 6.3e-06 55.8 239 26.4
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 6.3e-06 55.8 238 25.6
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 6.3e-06 55.8 238 24.8
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 6.3e-06 55.8 239 26.4
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 6.3e-06 55.8 238 25.2
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 8.3e-06 55.5 244 26.6
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 8.3e-06 55.5 250 25.6


User provided reference genes

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