Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0060631 Helianthus annuus HOM05D006588 ORTHO05D008272 1.7e-235 818.9 408 100.0
HanXRQChr03g0060991 Helianthus annuus HOM05D006588 ORTHO05D008272 4.9e-150 535.0 422 69.4
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 5.3e-144 515.0 419 68.0
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 2.1e-140 503.1 420 67.4
HanXRQChr03g0061101 Helianthus annuus HOM05D006588 ORTHO05D008272 1.6e-132 476.9 423 64.1
HanXRQChr03g0060961 Helianthus annuus HOM05D006588 ORTHO05D008272 2.6e-127 459.5 423 63.1
ECA240G3150 Erigeron canadensis HOM05D006588 ORTHO05D008272 2.7e-124 449.5 443 55.5
Lsat_1_v5_gn_7_39041 Lactuca sativa HOM05D006588 ORTHO05D008272 2.9e-118 429.5 448 55.1
HanXRQChr09g0238251 Helianthus annuus HOM05D006588 ORTHO05D008272 6.1e-116 421.8 451 53.2
HanXRQChr05g0142321 Helianthus annuus HOM05D006588 ORTHO05D008272 2.6e-114 416.4 380 63.9
Lsat_1_v5_gn_7_38281 Lactuca sativa HOM05D006588 ORTHO05D008272 2.8e-97 359.8 448 49.3
Lsat_1_v5_gn_7_38780 Lactuca sativa HOM05D006588 ORTHO05D008272 1.2e-87 327.8 468 45.3
Lsat_1_v5_gn_7_37981 Lactuca sativa HOM05D006588 ORTHO05D008272 3.5e-87 326.2 446 46.2
Lsat_1_v5_gn_7_38001 Lactuca sativa HOM05D006588 ORTHO05D008272 3.5e-87 326.2 446 46.2
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 5.0e-86 322.4 292 65.1
Lsat_1_v5_gn_7_38040 Lactuca sativa HOM05D006588 ORTHO05D008272 1.1e-85 321.2 448 45.1
CSS0027625 Camellia sinensis var. sinensis HOM05D006588 ORTHO05D008272 6.1e-84 315.5 442 42.1
Lj4C316T0 Lonicera japonica HOM05D006588 ORTHO05D008272 1.8e-80 303.9 444 41.7
MSTRG.10583 Avicennia marina HOM05D006588 ORTHO05D008272 3.2e-80 303.1 442 41.2
Cc06_g10980 Coffea canephora HOM05D006588 ORTHO05D008272 2.7e-79 300.1 442 41.9
Dinv36733 Davidia involucrata HOM05D006588 ORTHO05D008272 1.0e-78 298.1 426 43.4
Oeu018228.1 Olea europaea HOM05D006588 ORTHO05D008272 8.6e-78 295.0 453 40.8
Atru.chr7.1520 Acer truncatum HOM05D006588 ORTHO05D008272 4.3e-77 292.7 441 41.0
Migut.K00574 Erythranthe guttata HOM05D006588 ORTHO05D008272 2.8e-76 290.0 447 41.6
SalBow1G2363 Salvia bowleyana HOM05D006588 ORTHO05D008272 3.1e-75 286.6 446 41.0
SalBow1G2795 Salvia bowleyana HOM05D006588 ORTHO05D008272 3.1e-75 286.6 446 41.0
TAR636G2459 Trochodendron aralioides HOM05D006588 ORTHO05D008272 6.8e-75 285.4 443 39.3
Lsat_1_v5_gn_7_38020 Lactuca sativa HOM05D006588 ORTHO05D008272 2.6e-74 283.5 497 38.4
Hma1.2p1_1074F.1_g254320 Hydrangea macrophylla HOM05D006588 ORTHO05D008272 7.5e-74 282.0 442 40.0
Manes.03G030400 Manihot esculenta HOM05D006588 ORTHO05D008272 9.8e-74 281.6 447 40.3
Thecc.09G094100 Theobroma cacao HOM05D006588 ORTHO05D008272 9.8e-74 281.6 443 40.0
Gohir.D06G069300 Gossypium hirsutum HOM05D006588 ORTHO05D008272 1.4e-72 277.7 441 40.8
Gorai.010G080900 Gossypium raimondii HOM05D006588 ORTHO05D008272 1.4e-72 277.7 441 40.8
Rhsim05G0031800 Rhododendron simsii HOM05D006588 ORTHO05D008272 1.9e-72 277.3 442 38.9
Cfa003132 Carpinus fangiana HOM05D006588 ORTHO05D008272 7.0e-72 275.4 442 38.7
Duzib150G1363 Durio zibethinus HOM05D006588 ORTHO05D008272 1.6e-71 274.2 443 39.7
Ciclev10008264m.g Citrus clementina HOM05D006588 ORTHO05D008272 3.5e-71 273.1 444 38.5
HanXRQChr03g0060621 Helianthus annuus HOM05D006588 ORTHO05D008272 1.7e-70 270.8 227 67.8
unitig_699.g19309 Utricularia gibba HOM05D006588 ORTHO05D008272 5.0e-70 269.2 441 38.1
CANSAT56G3648 Cannabis sativa HOM05D006588 ORTHO05D008272 1.1e-69 268.1 446 38.6
CANSAT56G2228 Cannabis sativa HOM05D006588 ORTHO05D008272 3.3e-69 266.5 446 38.6
QL02p063459 Quercus lobata HOM05D006588 ORTHO05D008272 2.8e-68 263.5 442 37.8
MBI04_g06220_MAGBIO Magnolia biondii HOM05D006588 ORTHO05D008272 3.1e-67 260.0 445 37.5
vmacro10821 Vaccinium macrocarpon HOM05D006588 ORTHO05D008272 8.9e-67 258.5 474 36.7
TWI34G1517 Tripterygium wilfordii HOM05D006588 ORTHO05D008272 3.4e-66 256.5 449 39.9
SGA_v2.0_scaffold28G11949 Striga asiatica HOM05D006588 ORTHO05D008272 7.5e-66 255.4 475 37.3
Sc15g0003870 Simmondsia chinensis HOM05D006588 ORTHO05D008272 8.3e-65 251.9 449 37.0
Lalb_Chr09g0331761 Lupinus albus HOM05D006588 ORTHO05D008272 5.4e-64 249.2 442 37.8
CANSAT56G0790 Cannabis sativa HOM05D006588 ORTHO05D008272 7.8e-63 245.4 421 38.5
THA.LOC104814599 Tarenaya hassleriana HOM05D006588 ORTHO05D008272 1.0e-62 245.0 446 37.2
Lj4g0006334 Lotus japonicus HOM05D006588 ORTHO05D008272 2.3e-62 243.8 443 36.1
TPR.G25442 Trifolium pratense HOM05D006588 ORTHO05D008272 4.3e-61 239.6 450 36.0
Sp7g27300 Schrenkiella parvula HOM05D006588 ORTHO05D008272 9.5e-61 238.4 441 35.4
Psat7g018800 Pisum sativum HOM05D006588 ORTHO05D008272 1.2e-60 238.0 448 34.8
ClCG11G012860 Citrullus lanatus HOM05D006588 ORTHO05D008272 2.1e-60 237.3 444 36.7
AL7G22970 Arabidopsis lyrata HOM05D006588 ORTHO05D008272 2.8e-60 236.9 442 34.8
Nn6g35407 Nelumbo nucifera HOM05D006588 ORTHO05D008272 1.8e-59 234.2 440 34.5
Aa31LG2G21010 Aethionema arabicum HOM05D006588 ORTHO05D008272 3.1e-59 233.4 442 37.3
AT4G29420 Arabidopsis thaliana HOM05D006588 ORTHO05D008272 4.0e-59 233.0 443 34.8
Eucgr.C00929 Eucalyptus grandis HOM05D006588 ORTHO05D008272 5.2e-59 232.6 450 36.9
Carub.0007s1112 Capsella rubella HOM05D006588 ORTHO05D008272 8.9e-59 231.9 441 34.7
Glyma.08G030700 Glycine max HOM05D006588 ORTHO05D008272 1.5e-58 231.1 443 35.2
Thhalv10025196m.g Eutrema salsugineum HOM05D006588 ORTHO05D008272 2.0e-58 230.7 441 34.9
Sed0004057 Sechium edule HOM05D006588 ORTHO05D008272 2.6e-58 230.3 445 36.6
VMungo0251G0425 Vigna mungo HOM05D006588 ORTHO05D008272 3.7e-57 226.5 444 35.1
A01p08610 Brassica napus HOM05D006588 ORTHO05D008272 6.4e-57 225.7 439 33.9
Lsat_1_v5_gn_7_38181 Lactuca sativa HOM05D006588 ORTHO05D008272 1.4e-56 224.6 421 39.9
Phvul.002G305400 Phaseolus vulgaris HOM05D006588 ORTHO05D008272 1.4e-56 224.6 444 34.7
CsaV3_5G029260 Cucumis sativus L. HOM05D006588 ORTHO05D008272 1.9e-56 224.2 444 36.0
C01p10080 Brassica napus HOM05D006588 ORTHO05D008272 2.4e-56 223.8 439 33.3
BraA01t00812Z Brassica rapa HOM05D006588 ORTHO05D008272 2.4e-56 223.8 439 33.0
BolC1t00966H Brassica oleracea HOM05D006588 ORTHO05D008272 3.2e-56 223.4 439 33.5
CARHR237240 Cardamine hirsuta HOM05D006588 ORTHO05D008272 4.1e-56 223.0 443 33.6
Ca_17389_v3 Cicer arietinum L. HOM05D006588 ORTHO05D008272 1.6e-55 221.1 446 34.1
Gohir.A06G070700 Gossypium hirsutum HOM05D006588 ORTHO05D008272 5.1e-54 216.1 320 43.4
CDE06G2665 Ceratophyllum demersum HOM05D006588 ORTHO05D008272 1.2e-52 211.5 443 32.5
CiPaw.03G219600 Carya illinoinensis HOM05D006588 ORTHO05D008272 1.4e-51 208.0 322 40.7
HPP92_003983 Vanilla planifolia HOM05D006588 ORTHO05D008272 1.4e-48 198.0 449 32.3
Actinidia39746 Actinidia chinensis HOM05D006588 ORTHO05D008272 1.9e-48 197.6 440 33.4
Haze_25873 Corylus avellana HOM05D006588 ORTHO05D008272 2.1e-47 194.1 287 39.7
Rhsim05G0031600 Rhododendron simsii HOM05D006588 ORTHO05D008272 2.8e-44 183.7 289 39.1
CANSAT56G3251 Cannabis sativa HOM05D006588 ORTHO05D008272 6.2e-44 182.6 271 39.1
Eucgr.L03123 Eucalyptus grandis HOM05D006588 ORTHO05D008272 1.7e-41 174.5 344 37.5
Medtr8g101930 Medicago truncatula HOM05D006588 ORTHO05D008272 4.9e-41 172.9 376 32.2
COL.COLO4_18239 Corchorus olitorius HOM05D006588 ORTHO05D008272 2.7e-39 167.2 437 30.2
ATR0789G046 Amborella trichopoda HOM05D006588 ORTHO05D008272 6.0e-39 166.0 444 30.0
Os01g0193500 Oryza sativa ssp. japonica HOM05D006588 ORTHO05D008272 1.1e-35 155.2 344 34.0
SEGI_25649 Sequoiadendron giganteum HOM05D006588 ORTHO05D008272 1.2e-34 151.8 454 28.2
MELO3C011777.2 Cucumis melo HOM05D006588 ORTHO05D008272 1.3e-33 148.3 289 35.6
Zm00001eb121140 Zea mays HOM05D006588 ORTHO05D008272 1.3e-33 148.3 460 30.9
BcaC09g51727 Brassica carinata HOM05D006588 ORTHO05D008272 8.4e-33 145.6 289 33.2
Actinidia25278 Actinidia chinensis HOM05D006588 ORTHO05D008272 5.4e-32 142.9 195 44.6
Nn7g36587 Nelumbo nucifera HOM05D006588 ORTHO05D008272 3.5e-31 140.2 197 41.6
HanXRQChr03g0061001 Helianthus annuus HOM05D006588 ORTHO05D008272 7.9e-31 139.0 151 57.0
Lsat_1_v5_gn_7_39080 Lactuca sativa HOM05D006588 ORTHO05D008272 6.5e-25 119.4 180 44.4
Rhsim05G0031700 Rhododendron simsii HOM05D006588 ORTHO05D008272 1.3e-22 111.7 271 31.7
HanXRQChr03g0060641 Helianthus annuus HOM05D006588 ORTHO05D008272 8.7e-22 109.0 58 84.5
Duzib168G2000 Durio zibethinus HOM05D006588 ORTHO05D002622 4.8e-20 103.2 200 34.0
Lsat_1_v5_gn_7_38261 Lactuca sativa HOM05D006588 ORTHO05D008272 3.1e-19 100.5 130 44.6
AagrBONN_evm.TU.Sc2ySwM_228.3249 Anthoceros agrestis HOM05D006588 ORTHO05D008272 1.9e-13 81.3 303 25.7
SalBow8G2706 Salvia bowleyana HOM05D000076 ORTHO05D013329 2.0e-10 71.2 115 40.9
unitig_699.g19308 Utricularia gibba HOM05D006588 ORTHO05D008272 1.4e-08 65.1 165 27.9
Mapoly0029s0113 Marchantia polymorpha HOM05D006588 ORTHO05D008272 9.4e-08 62.4 256 23.0
Mapoly0117s0029 Marchantia polymorpha HOM05D006588 ORTHO05D008272 1.6e-07 61.6 273 24.5
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 2.7e-07 60.8 229 27.1
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 4.6e-07 60.1 225 29.3
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 1.0e-06 58.9 225 29.3
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 2.3e-06 57.8 229 28.4
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 2.3e-06 57.8 229 27.1
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 3.0e-06 57.4 229 27.9
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 3.0e-06 57.4 233 27.0
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 5.1e-06 56.6 229 27.9
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 5.1e-06 56.6 231 28.6
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 5.1e-06 56.6 230 28.7
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 8.8e-06 55.8 229 27.9
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 8.8e-06 55.8 230 27.8


User provided reference genes

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