Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 3.6e-103 378.3 192 100.0
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 7.6e-93 344.0 193 91.2
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 6.6e-89 330.9 193 88.1
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 5.8e-85 317.8 193 86.0
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 9.9e-85 317.0 191 82.7
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 5.4e-83 311.2 197 80.7
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 1.2e-82 310.1 193 81.3
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 3.5e-82 308.5 193 80.3
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 3.0e-81 305.4 197 79.7
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 3.9e-81 305.1 194 78.9
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 3.9e-81 305.1 190 80.5
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 5.1e-81 304.7 193 79.8
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 8.7e-81 303.9 194 79.4
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 8.7e-81 303.9 193 79.3
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 8.7e-81 303.9 192 78.1
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 1.1e-80 303.5 193 79.3
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 1.9e-80 302.8 192 80.2
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 2.5e-80 302.4 193 80.8
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 4.3e-80 301.6 193 80.8
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 5.6e-80 301.2 194 79.9
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 5.6e-80 301.2 194 79.9
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 7.4e-80 300.8 194 79.4
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 7.4e-80 300.8 193 77.7
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 7.4e-80 300.8 195 79.0
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 7.4e-80 300.8 192 77.1
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 9.6e-80 300.4 192 79.7
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 1.3e-79 300.1 194 77.8
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 1.3e-79 300.1 192 77.1
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 1.6e-79 299.7 192 79.7
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 1.6e-79 299.7 192 79.7
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 1.6e-79 299.7 194 78.9
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 2.1e-79 299.3 192 75.0
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 2.8e-79 298.9 195 77.9
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 2.8e-79 298.9 192 76.6
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 3.7e-79 298.5 194 78.4
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 6.2e-79 297.7 194 76.8
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 6.2e-79 297.7 192 79.7
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 8.1e-79 297.4 192 77.1
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.1e-78 297.0 194 77.8
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.1e-78 297.0 194 77.8
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.1e-78 297.0 192 79.2
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.1e-78 297.0 198 76.8
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 1.8e-78 296.2 193 79.3
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 1.8e-78 296.2 194 77.8
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 1.8e-78 296.2 193 77.7
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 1.8e-78 296.2 196 79.1
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 2.4e-78 295.8 192 76.6
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 4.0e-78 295.0 194 76.3
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 5.3e-78 294.7 199 73.9
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 6.9e-78 294.3 192 78.1
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 6.9e-78 294.3 194 74.2
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 6.9e-78 294.3 198 74.7
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 1.2e-77 293.5 194 75.8
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.2e-77 293.5 193 78.8
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 1.5e-77 293.1 198 75.3
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 2.6e-77 292.4 192 75.5
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 2.6e-77 292.4 192 76.0
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 3.4e-77 292.0 197 73.1
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 3.4e-77 292.0 192 76.6
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 4.5e-77 291.6 196 75.5
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 5.8e-77 291.2 197 73.1
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 7.6e-77 290.8 192 75.5
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 7.6e-77 290.8 197 73.1
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 7.6e-77 290.8 197 73.1
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 1.7e-76 289.7 199 72.9
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.7e-76 289.7 202 74.8
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 1.7e-76 289.7 194 74.7
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 1.7e-76 289.7 197 73.1
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.7e-76 289.7 201 73.6
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 2.2e-76 289.3 197 72.6
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 2.2e-76 289.3 197 72.6
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 2.2e-76 289.3 199 73.9
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 2.9e-76 288.9 197 72.6
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 2.9e-76 288.9 192 76.0
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 3.8e-76 288.5 195 73.8
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 3.8e-76 288.5 195 73.8
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 3.8e-76 288.5 192 76.0
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 3.8e-76 288.5 194 74.2
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 4.9e-76 288.1 206 73.3
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 6.4e-76 287.7 197 74.6
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 6.4e-76 287.7 200 73.0
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 6.4e-76 287.7 200 73.0
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 6.4e-76 287.7 208 70.7
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 8.4e-76 287.3 201 73.1
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.1e-75 287.0 201 73.6
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 1.4e-75 286.6 194 74.7
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.9e-75 286.2 199 72.4
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 1.9e-75 286.2 192 75.5
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 4.2e-75 285.0 200 72.5
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 4.2e-75 285.0 199 72.4
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 5.5e-75 284.6 196 74.5
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 5.5e-75 284.6 203 71.9
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 7.1e-75 284.3 202 72.8
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 9.3e-75 283.9 201 71.6
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 1.2e-74 283.5 203 71.4
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 1.6e-74 283.1 196 73.5
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 2.1e-74 282.7 198 74.2
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 2.7e-74 282.3 241 63.9
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 6.0e-74 281.2 200 71.0
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 7.9e-74 280.8 200 71.0
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 3.0e-73 278.9 200 71.5
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 3.0e-73 278.9 191 75.9
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 3.9e-73 278.5 194 75.3
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 5.1e-73 278.1 194 74.7
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 6.7e-73 277.7 196 72.4
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 2.5e-72 275.8 192 71.9
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 4.3e-72 275.0 196 69.9
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 5.6e-72 274.6 215 66.5
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 3.7e-71 271.9 196 71.4
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 1.1e-70 270.4 174 78.2
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 1.8e-70 269.6 204 66.7
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 2.4e-70 269.2 192 73.4
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 9.0e-70 267.3 198 70.2
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 9.0e-70 267.3 204 69.6
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 2.0e-69 266.2 198 69.2
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 4.5e-69 265.0 175 77.1
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 1.0e-68 263.8 186 72.0
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 3.8e-68 261.9 193 69.4
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 8.4e-68 260.8 186 68.3
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 1.1e-67 260.4 190 71.6
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 1.1e-67 260.4 202 66.8
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 1.4e-67 260.0 174 74.1
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 1.9e-67 259.6 223 64.6
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 4.2e-67 258.5 193 68.4
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 5.5e-67 258.1 199 67.3
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 7.1e-67 257.7 186 71.5
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 9.3e-67 257.3 211 65.9
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 3.5e-66 255.4 182 71.4
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.0e-65 253.8 192 67.7
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 5.1e-65 251.5 201 66.7
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 1.9e-64 249.6 187 67.4
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 5.7e-64 248.1 181 68.0
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 1.3e-63 246.9 214 64.0
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 3.7e-63 245.4 233 59.7
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.1e-62 243.8 183 66.7
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 6.5e-60 234.6 201 67.7
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 6.5e-60 234.6 213 61.0
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 1.4e-59 233.4 187 66.8
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 2.5e-59 232.6 199 61.3
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 3.2e-59 232.3 181 64.6
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 2.7e-58 229.2 179 66.5
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 5.7e-56 221.5 192 62.5
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 2.9e-52 209.1 177 61.6
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 2.8e-47 192.6 118 81.4
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 1.1e-46 190.7 153 65.4
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 1.8e-46 189.9 124 81.5
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 3.2e-43 179.1 181 54.7
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 8.2e-39 164.5 100 88.0
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 1.1e-38 164.1 107 79.4
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.8e-38 163.3 100 86.0
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 6.5e-36 154.8 188 51.6
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 1.1e-30 137.5 97 69.1
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.3e-28 130.6 70 91.4
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 3.2e-27 125.9 199 44.2
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 1.8e-25 120.2 209 41.6
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 6.8e-25 118.2 99 66.7
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 3.4e-24 115.9 78 69.2
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 5.7e-24 115.2 194 38.1
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 8.3e-23 111.3 79 64.6
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 3.5e-21 105.9 100 63.0
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 1.7e-20 103.6 190 41.1
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 1.9e-19 100.1 108 49.1
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 3.6e-18 95.9 190 39.5
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 2.0e-16 90.1 72 63.9
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 3.1e-14 82.8 57 63.2
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 5.4e-14 82.0 61 55.7
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 7.0e-14 81.6 51 80.4
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 9.2e-14 81.3 53 77.4
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 7.8e-13 78.2 70 54.3
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 1.0e-12 77.8 172 31.4
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 1.8e-09 67.0 51 58.8
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 1.2e-08 64.3 70 51.4


User provided reference genes

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