Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0059601 Helianthus annuus HOM05D002342 ORTHO05D002407 1.7e-144 516.2 290 100.0
HanXRQChr02g0059621 Helianthus annuus HOM05D002342 ORTHO05D002407 1.7e-144 516.2 290 100.0
HanXRQChr16g0515531 Helianthus annuus HOM05D000002 ORTHO05D000001 1.6e-94 350.1 289 72.0
HanXRQChr11g0339061 Helianthus annuus HOM05D002342 ORTHO05D002407 7.2e-87 324.7 295 62.4
ECA233G6204 Erigeron canadensis HOM05D002342 ORTHO05D002407 1.1e-71 274.2 304 55.3
Lsat_1_v5_gn_6_60880 Lactuca sativa HOM05D002342 ORTHO05D002407 8.5e-64 248.1 294 52.0
Hma1.2p1_0383F.1_g140560 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 1.5e-47 194.1 303 43.6
Prupe.1G159000 Prunus persica HOM05D002342 ORTHO05D002407 2.8e-46 189.9 313 41.9
Lj6C525G6 Lonicera japonica HOM05D002342 ORTHO05D002407 3.6e-46 189.5 313 42.2
GSVIVG01020920001 Vitis vinifera HOM05D002342 ORTHO05D002407 6.2e-46 188.7 306 43.1
QL05p014243 Quercus lobata HOM05D002342 ORTHO05D002407 1.4e-45 187.6 332 41.3
Dinv27217 Davidia involucrata HOM05D002342 ORTHO05D002407 4.0e-45 186.0 326 42.0
QL05p014435 Quercus lobata HOM05D002342 ORTHO05D002407 4.0e-45 186.0 332 41.0
Lj6C517T2 Lonicera japonica HOM05D002342 ORTHO05D002407 2.0e-44 183.7 303 42.9
Lj6C525G9 Lonicera japonica HOM05D002342 ORTHO05D002407 7.5e-44 181.8 303 42.6
QL05p014631 Quercus lobata HOM05D002342 ORTHO05D002407 7.5e-44 181.8 307 44.0
CiPaw.01G119300 Carya illinoinensis HOM05D002342 ORTHO05D002407 9.8e-44 181.4 323 40.6
Hma1.2p1_0383F.1_g140370 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 1.7e-43 180.6 294 42.5
Lj6C526T11 Lonicera japonica HOM05D002342 ORTHO05D002407 2.2e-43 180.3 309 43.0
Lj6C522G10 Lonicera japonica HOM05D002342 ORTHO05D002407 4.9e-43 179.1 311 41.8
Lj6C523G2 Lonicera japonica HOM05D002342 ORTHO05D002407 8.3e-43 178.3 310 41.3
Haze_11627 Corylus avellana HOM05D002342 ORTHO05D002407 1.9e-42 177.2 332 38.6
QL05p014183 Quercus lobata HOM05D002342 ORTHO05D002407 3.2e-42 176.4 333 39.9
CiPaw.01G119000 Carya illinoinensis HOM05D002342 ORTHO05D002407 7.0e-42 175.3 317 40.7
Sed0007147 Sechium edule HOM05D002342 ORTHO05D002407 1.2e-41 174.5 313 41.2
Dinv38212 Davidia involucrata HOM05D002342 ORTHO05D002407 2.7e-41 173.3 320 39.4
Eucgr.A01634 Eucalyptus grandis HOM05D002342 ORTHO05D002407 2.7e-41 173.3 325 38.2
MD04G1012800 Malus domestica HOM05D002342 ORTHO05D002407 3.5e-41 172.9 322 41.0
MD04G1012900 Malus domestica HOM05D002342 ORTHO05D002407 4.6e-41 172.6 315 41.6
ClCG05G003260 Citrullus lanatus HOM05D002342 ORTHO05D002407 6.0e-41 172.2 299 40.8
Cfa014941 Carpinus fangiana HOM05D002342 ORTHO05D002407 7.8e-41 171.8 335 37.9
Eucgr.H02741 Eucalyptus grandis HOM05D002342 ORTHO05D002407 7.8e-41 171.8 320 38.1
Prupe.1G159200 Prunus persica HOM05D002342 ORTHO05D002407 7.8e-41 171.8 318 40.6
Oeu045313.1 Olea europaea HOM05D002342 ORTHO05D002407 1.0e-40 171.4 303 39.6
Nn1g07933 Nelumbo nucifera HOM05D002342 ORTHO05D002407 2.3e-40 170.2 327 38.8
HanXRQChr02g0059031 Helianthus annuus HOM05D002342 ORTHO05D002407 3.9e-40 169.5 300 42.7
RcHm_v2.0_Chr6g0275261 Rosa chinensis HOM05D002342 ORTHO05D002407 3.9e-40 169.5 314 40.1
FvH4_2g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 5.0e-40 169.1 314 38.5
FAN24G1108 Fragaria x ananassa HOM05D002342 ORTHO05D002407 5.0e-40 169.1 314 38.5
Manes.03G146000 Manihot esculenta HOM05D002342 ORTHO05D002407 5.0e-40 169.1 314 38.2
CSS0000956 Camellia sinensis var. sinensis HOM05D002342 ORTHO05D002407 8.6e-40 168.3 319 39.5
Aqoxy2G03980 Aquilegia oxysepala HOM05D002342 ORTHO05D002407 1.1e-39 167.9 322 38.2
Migut.N01843 Erythranthe guttata HOM05D002342 ORTHO05D002407 1.9e-39 167.2 303 40.6
Glyma.08G111400 Glycine max HOM05D002342 ORTHO05D002407 1.9e-39 167.2 329 38.9
Sed0020750 Sechium edule HOM05D002342 ORTHO05D002407 1.9e-39 167.2 309 39.2
Haze_11629 Corylus avellana HOM05D002342 ORTHO05D002407 3.3e-39 166.4 316 39.9
PSO017G5596 Papaver somniferum HOM05D002342 ORTHO05D002407 4.3e-39 166.0 313 37.1
PSO063G4028 Papaver somniferum HOM05D002342 ORTHO05D002407 4.3e-39 166.0 329 36.5
Rhsim09G0058500 Rhododendron simsii HOM05D002342 ORTHO05D002407 4.3e-39 166.0 307 40.1
CAN.G1333.6 Capsicum annuum HOM05D002342 ORTHO05D002407 5.6e-39 165.6 297 41.1
FAN15G0433 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.2e-38 164.5 314 38.2
TAR365G0690 Trochodendron aralioides HOM05D002342 ORTHO05D002407 1.2e-38 164.5 325 39.1
DCAR_002789 Daucus carota HOM05D002342 ORTHO05D002407 2.1e-38 163.7 314 39.8
HanXRQChr16g0498001 Helianthus annuus HOM05D002342 ORTHO05D002407 2.8e-38 163.3 303 41.9
MD04G1013100 Malus domestica HOM05D002342 ORTHO05D002407 4.7e-38 162.5 290 40.0
Aa31LG9G3890 Aethionema arabicum HOM05D002342 ORTHO05D002407 6.2e-38 162.2 309 37.9
CsaV3_3G010890 Cucumis sativus L. HOM05D002342 ORTHO05D002407 6.2e-38 162.2 309 40.1
TAR365G0670 Trochodendron aralioides HOM05D002342 ORTHO05D002407 6.2e-38 162.2 325 38.8
Atru.chr4.1622 Acer truncatum HOM05D002342 ORTHO05D002407 1.1e-37 161.4 291 38.5
MELO3C006307.2 Cucumis melo HOM05D002342 ORTHO05D002407 1.1e-37 161.4 306 38.9
PSO063G7363 Papaver somniferum HOM05D002342 ORTHO05D002407 1.1e-37 161.4 309 38.2
PSO017G1666 Papaver somniferum HOM05D002342 ORTHO05D002407 1.8e-37 160.6 296 38.9
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 3.1e-37 159.8 319 37.6
Lj4g0001754 Lotus japonicus HOM05D002342 ORTHO05D002407 3.1e-37 159.8 323 36.5
Oeu055768.2 Olea europaea HOM05D002342 ORTHO05D002407 4.0e-37 159.5 319 38.6
Atru.chr4.1627 Acer truncatum HOM05D002342 ORTHO05D002407 6.8e-37 158.7 307 38.4
AL7G42760 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 6.8e-37 158.7 297 36.4
Lj6A517T28 Lonicera japonica HOM05D002342 ORTHO05D002407 6.8e-37 158.7 293 39.9
Lsat_1_v5_gn_6_60921 Lactuca sativa HOM05D002342 ORTHO05D002407 8.9e-37 158.3 309 38.5
Potri.001G317200 Populus trichocarpa HOM05D002342 ORTHO05D002407 1.5e-36 157.5 293 39.9
Lalb_Chr12g0205541 Lupinus albus HOM05D002342 ORTHO05D002407 2.0e-36 157.1 316 38.0
Hund05344 Selenicereus undatus HOM05D002342 ORTHO05D002407 2.6e-36 156.8 320 36.9
Atru.chr4.1618 Acer truncatum HOM05D002342 ORTHO05D002407 3.4e-36 156.4 309 37.5
Thecc.04G199700 Theobroma cacao HOM05D002342 ORTHO05D002407 3.4e-36 156.4 327 36.4
BraA08t32682Z Brassica rapa HOM05D002342 ORTHO05D002407 4.4e-36 156.0 298 36.9
Gohir.A03G095600 Gossypium hirsutum HOM05D002342 ORTHO05D002407 7.5e-36 155.2 332 35.8
Phvul.003G291200 Phaseolus vulgaris HOM05D002342 ORTHO05D002407 7.5e-36 155.2 329 36.2
Sabra16G0200600 Salix brachista HOM05D002342 ORTHO05D002407 7.5e-36 155.2 290 40.0
Sp7g11520 Schrenkiella parvula HOM05D002342 ORTHO05D002407 7.5e-36 155.2 300 36.3
Sopen09g034970 Solanum pennellii HOM05D002342 ORTHO05D002407 9.8e-36 154.8 303 38.0
VMungo1127G2260 Vigna mungo HOM05D002342 ORTHO05D002407 1.3e-35 154.5 298 38.3
ECA233G4700 Erigeron canadensis HOM05D002342 ORTHO05D002407 2.2e-35 153.7 316 36.7
Nitab4.5_0000401g0100 Nicotiana tabacum HOM05D002342 ORTHO05D002407 2.2e-35 153.7 317 38.2
Cc03_g08030 Coffea canephora HOM05D002342 ORTHO05D002407 2.9e-35 153.3 310 40.6
FAN22G0412 Fragaria x ananassa HOM05D002342 ORTHO05D002407 2.9e-35 153.3 306 37.6
Gohir.D02G113900 Gossypium hirsutum HOM05D002342 ORTHO05D002407 2.9e-35 153.3 332 38.6
Gorai.005G129600 Gossypium raimondii HOM05D002342 ORTHO05D002407 2.9e-35 153.3 332 38.6
BcaB04g17657 Brassica carinata HOM05D002342 ORTHO05D002407 4.9e-35 152.5 299 35.1
BcaC07g37335 Brassica carinata HOM05D002342 ORTHO05D002407 4.9e-35 152.5 298 36.2
C08p07730 Brassica napus HOM05D002342 ORTHO05D002407 4.9e-35 152.5 298 36.2
BolC8t47622H Brassica oleracea HOM05D002342 ORTHO05D002407 4.9e-35 152.5 298 36.2
MBI04_g21151_MAGBIO Magnolia biondii HOM05D002342 ORTHO05D002407 4.9e-35 152.5 338 34.9
Solyc09g092100.4 Solanum lycopersicum HOM05D002342 ORTHO05D002407 4.9e-35 152.5 303 38.0
THA.LOC104804807 Tarenaya hassleriana HOM05D002342 ORTHO05D002407 4.9e-35 152.5 298 35.6
A08p06660 Brassica napus HOM05D002342 ORTHO05D002407 6.4e-35 152.1 298 36.6
FvH4_4g13660 Fragaria vesca HOM05D002342 ORTHO05D002407 6.4e-35 152.1 299 38.5
Nitab4.5_0006215g0010 Nicotiana tabacum HOM05D002342 ORTHO05D002407 8.3e-35 151.8 306 38.2
Eucgr.H02759 Eucalyptus grandis HOM05D002342 ORTHO05D002407 1.1e-34 151.4 310 36.8
CAN.G1333.8 Capsicum annuum HOM05D002342 ORTHO05D002407 1.4e-34 151.0 312 38.8
FAN12G2750 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.4e-34 151.0 299 38.5
Cpa.g.c30822.1 Carica papaya HOM05D002342 ORTHO05D002407 2.4e-34 150.2 317 36.0
FAN07G2373 Fragaria x ananassa HOM05D002342 ORTHO05D002407 3.2e-34 149.8 306 37.3
CANSAT78G2520 Cannabis sativa HOM05D002342 ORTHO05D002407 7.1e-34 148.7 294 37.4
COL.COLO4_20180 Corchorus olitorius HOM05D002342 ORTHO05D002407 7.1e-34 148.7 334 37.1
RcHm_v2.0_Chr4g0414351 Rosa chinensis HOM05D002342 ORTHO05D002407 7.1e-34 148.7 305 37.4
Thhalv10024181m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 9.2e-34 148.3 298 34.9
Hma1.2p1_0383F.1_g140620 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 1.2e-33 147.9 270 40.0
AUR62018579 Chenopodium quinoa HOM05D002342 ORTHO05D002407 1.6e-33 147.5 306 37.6
AUR62018583 Chenopodium quinoa HOM05D002342 ORTHO05D002407 1.6e-33 147.5 306 37.6
Eucgr.H02757 Eucalyptus grandis HOM05D002342 ORTHO05D002407 1.6e-33 147.5 310 36.1
Eucgr.H02755 Eucalyptus grandis HOM05D002342 ORTHO05D002407 2.1e-33 147.1 311 35.4
AT4G13750 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 2.7e-33 146.7 297 36.0
Carub.0007s2871 Capsella rubella HOM05D002342 ORTHO05D002407 2.7e-33 146.7 291 34.4
CARHR219530 Cardamine hirsuta HOM05D002342 ORTHO05D002407 3.5e-33 146.4 291 35.1
HPP92_020875 Vanilla planifolia HOM05D002342 ORTHO05D002407 3.5e-33 146.4 293 35.2
Medtr8g085280 Medicago truncatula HOM05D002342 ORTHO05D002407 7.8e-33 145.2 332 36.7
TWI09G0668 Tripterygium wilfordii HOM05D002342 ORTHO05D002407 1.3e-32 144.4 325 35.7
Eucgr.H02754 Eucalyptus grandis HOM05D002342 ORTHO05D002407 1.7e-32 144.1 310 35.8
AUR62020836 Chenopodium quinoa HOM05D002342 ORTHO05D002407 2.3e-32 143.7 312 37.8
SGA_v2.0_scaffold31G12585 Striga asiatica HOM05D002342 ORTHO05D002407 2.3e-32 143.7 294 40.5
Duzib212G0344 Durio zibethinus HOM05D002342 ORTHO05D002407 5.1e-32 142.5 323 36.2
Eucgr.H02765 Eucalyptus grandis HOM05D002342 ORTHO05D002407 1.1e-31 141.4 317 36.0
EL10Ac3g07477 Beta vulgaris HOM05D002342 ORTHO05D002407 1.9e-31 140.6 311 37.3
Sc13g0000230 Simmondsia chinensis HOM05D002342 ORTHO05D002407 3.3e-31 139.8 323 36.5
HPP92_028111 Vanilla planifolia HOM05D002342 ORTHO05D002407 4.3e-31 139.4 295 34.2
Eucgr.H02762 Eucalyptus grandis HOM05D002342 ORTHO05D002407 5.6e-31 139.0 309 35.0
PGR083G1386 Punica granatum HOM05D002342 ORTHO05D002407 5.6e-31 139.0 315 34.0
ECA233G4033 Erigeron canadensis HOM05D002342 ORTHO05D002407 1.2e-30 137.9 316 36.1
Migut.N00402 Erythranthe guttata HOM05D002342 ORTHO05D002407 1.2e-30 137.9 310 37.1
arahy.Tifrunner.gnm1.ann1.ZGTC82 Arachis hypogaea HOM05D002342 ORTHO05D002407 8.1e-30 135.2 299 37.5
Peaxi162Scf00047g00342 Petunia axillaris HOM05D002342 ORTHO05D002407 1.1e-29 134.8 355 34.6
ATR0829G112 Amborella trichopoda HOM05D002342 ORTHO05D002407 3.1e-29 133.3 318 33.6
Ah.14g086370 Amaranthus hybridus HOM05D002342 ORTHO05D002407 6.8e-29 132.1 318 35.2
FAN27G2824 Fragaria x ananassa HOM05D002342 ORTHO05D002407 6.8e-29 132.1 286 35.3
unitig_8.g4999 Utricularia gibba HOM05D002342 ORTHO05D002407 2.6e-28 130.2 292 35.3
Zm00001eb061370 Zea mays HOM05D002342 ORTHO05D002407 2.6e-28 130.2 324 32.1
Ca_17971_v3 Cicer arietinum L. HOM05D002342 ORTHO05D002407 4.4e-28 129.4 320 34.1
Migut.N01844 Erythranthe guttata HOM05D002342 ORTHO05D002407 8.4e-27 125.2 290 35.5
SHI00031 Sapria himalayana HOM05D002342 ORTHO05D002407 5.4e-26 122.5 306 34.0
Cpa.g.sc83.15 Carica papaya HOM05D002342 ORTHO05D002407 1.2e-25 121.3 280 33.9
TPR.G11869 Trifolium pratense HOM05D002342 ORTHO05D002407 4.6e-25 119.4 325 33.2
RcHm_v2.0_Chr4g0414341 Rosa chinensis HOM05D002342 ORTHO05D002407 7.8e-25 118.6 104 60.6
HPP92_003865 Vanilla planifolia HOM05D002342 ORTHO05D002407 5.1e-24 115.9 312 34.9
SEGI_10632 Sequoiadendron giganteum HOM05D002342 ORTHO05D002407 2.5e-23 113.6 326 30.1
SEGI_23744 Sequoiadendron giganteum HOM05D002342 ORTHO05D002407 2.5e-23 113.6 326 30.1
FAN17G0157 Fragaria x ananassa HOM05D002342 ORTHO05D002407 4.3e-23 112.8 104 57.7
PGSC0003DMG402026419 Solanum tuberosum HOM05D002342 ORTHO05D002407 4.3e-23 112.8 106 58.5
FvH4_4g13640 Fragaria vesca HOM05D002342 ORTHO05D002407 5.6e-23 112.5 104 57.7
FvH4_4g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 1.2e-22 111.3 104 56.7
DCAR_030811 Daucus carota HOM05D002342 ORTHO05D002407 1.1e-21 108.2 99 59.6
Aa31LG9G3860 Aethionema arabicum HOM05D002342 ORTHO05D002407 3.1e-21 106.7 109 52.3
Migut.G00912 Erythranthe guttata HOM05D002342 ORTHO05D002407 3.1e-21 106.7 86 64.0
BcaB07g34076 Brassica carinata HOM05D000444 ORTHO05D000489 3.4e-20 103.2 105 53.3
CAN.G1333.3 Capsicum annuum HOM05D002342 ORTHO05D002407 3.4e-20 103.2 102 55.9
Pp3c21_20720 Physcomitrium patens HOM05D002342 ORTHO05D002407 1.3e-19 101.3 333 30.3
A06p05320 Brassica napus HOM05D002342 ORTHO05D002407 2.2e-19 100.5 104 51.9
C05p06400 Brassica napus HOM05D002342 ORTHO05D002407 2.2e-19 100.5 104 51.9
BolC5t29395H Brassica oleracea HOM05D002342 ORTHO05D002407 2.2e-19 100.5 104 51.9
BraA06t23740Z Brassica rapa HOM05D002342 ORTHO05D002407 2.2e-19 100.5 104 51.9
AL1G18710 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 4.9e-19 99.4 105 50.5
Carub.0001s0765 Capsella rubella HOM05D002342 ORTHO05D002407 6.4e-19 99.0 106 51.9
AT1G08300 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 8.4e-19 98.6 105 49.5
Thhalv10006953m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 3.2e-18 96.7 105 48.6
ECA246G4020 Erigeron canadensis HOM05D002342 ORTHO05D002407 1.2e-17 94.7 100 56.0
Lj6A516T55 Lonicera japonica HOM05D002342 ORTHO05D002407 1.6e-17 94.4 68 67.6
CARHR008160 Cardamine hirsuta HOM05D002342 ORTHO05D002407 3.5e-17 93.2 108 49.1
Sp1g06930 Schrenkiella parvula HOM05D002342 ORTHO05D002407 6.6e-16 89.0 82 57.3
vmacro00454 Vaccinium macrocarpon HOM05D002342 ORTHO05D002407 1.1e-15 88.2 96 53.1
Mapoly0105s0052 Marchantia polymorpha HOM05D002342 ORTHO05D002407 2.8e-14 83.6 389 26.0
CBR_g6414 Chara braunii HOM05D002342 ORTHO05D002407 3.6e-14 83.2 103 43.7
AagrBONN_evm.TU.Sc2ySwM_228.1729 Anthoceros agrestis HOM05D002342 ORTHO05D002407 1.8e-13 80.9 293 27.6
TAR365G0582 Trochodendron aralioides HOM05D002342 ORTHO05D002407 2.4e-13 80.5 56 67.9
Actinidia23411 Actinidia chinensis HOM05D002342 ORTHO05D002407 3.1e-13 80.1 98 49.0
Nitab4.5_0006964g0030 Nicotiana tabacum HOM05D002342 ORTHO05D002407 5.3e-13 79.3 81 51.9
TAR365G0886 Trochodendron aralioides HOM05D002342 ORTHO05D002407 2.0e-12 77.4 56 69.6
ECA246G4185 Erigeron canadensis HOM05D002342 ORTHO05D002407 4.5e-12 76.3 67 59.7
SMO337G0030 Selaginella moellendorffii HOM05D002342 ORTHO05D002407 4.5e-12 76.3 291 25.1
TPR.G357 Trifolium pratense HOM05D038100 ORTHO05D036767 3.8e-11 73.2 86 44.2
Medtr4g082295 Medicago truncatula HOM05D002342 ORTHO05D002407 3.5e-09 66.6 87 41.4
Cre14.g608150 Chlamydomonas reinhardtii HOM05D002342 ORTHO05D002407 1.5e-07 61.2 63 46.0
Medtr5g069070 Medicago truncatula HOM05D038100 ORTHO05D036767 3.3e-07 60.1 112 30.4
TPR.G3986 Trifolium pratense HOM05D002342 ORTHO05D002407 1.3e-06 58.2 97 42.3


User provided reference genes

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