Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0059521 Helianthus annuus HOM05D005430 ORTHO05D007814 1.5e-88 329.3 150 100.0
Lsat_1_v5_gn_6_62741 Lactuca sativa HOM05D005430 ORTHO05D007814 1.1e-49 200.3 128 66.4
HanXRQChr07g0185851 Helianthus annuus HOM05D005430 ORTHO05D007814 7.1e-46 187.6 141 61.7
Dinv38286 Davidia involucrata HOM05D005430 ORTHO05D007814 2.9e-39 165.6 113 61.9
CiPaw.01G204600 Carya illinoinensis HOM05D005430 ORTHO05D007814 8.4e-39 164.1 115 60.9
TWI73G0050 Tripterygium wilfordii HOM05D005430 ORTHO05D007814 1.9e-38 162.9 111 62.2
Duzib212G0862 Durio zibethinus HOM05D005430 ORTHO05D007814 3.2e-38 162.2 139 49.6
Cfa014874 Carpinus fangiana HOM05D005430 ORTHO05D007814 3.5e-37 158.7 141 50.4
Prupe.1G058400 Prunus persica HOM05D005430 ORTHO05D007814 3.5e-37 158.7 139 51.8
Thecc.04G212700 Theobroma cacao HOM05D005430 ORTHO05D007814 4.6e-37 158.3 142 49.3
Eucgr.H00103 Eucalyptus grandis HOM05D005430 ORTHO05D007814 6.0e-37 157.9 146 48.6
Ciclev10006174m.g Citrus clementina HOM05D005430 ORTHO05D007814 1.8e-36 156.4 147 53.1
QL12p006673 Quercus lobata HOM05D005430 ORTHO05D007814 1.8e-36 156.4 113 59.3
Carub.0003s2446 Capsella rubella HOM05D005430 ORTHO05D007814 2.3e-36 156.0 113 56.6
MD16G1234100 Malus domestica HOM05D005430 ORTHO05D007814 3.0e-36 155.6 141 52.5
Haze_11548 Corylus avellana HOM05D005430 ORTHO05D007814 3.9e-36 155.2 141 50.4
QL05p063717 Quercus lobata HOM05D005430 ORTHO05D007814 3.9e-36 155.2 113 58.4
QL05p063758 Quercus lobata HOM05D005430 ORTHO05D007814 3.9e-36 155.2 113 58.4
MELO3C006342.2 Cucumis melo HOM05D005430 ORTHO05D007814 5.1e-36 154.8 146 49.3
CsaV3_3G011340 Cucumis sativus L. HOM05D005430 ORTHO05D007814 8.7e-36 154.1 115 57.4
COL.COLO4_34091 Corchorus olitorius HOM05D005430 ORTHO05D007814 1.5e-35 153.3 126 53.2
Gohir.A10G120900 Gossypium hirsutum HOM05D005430 ORTHO05D007814 1.9e-35 152.9 142 49.3
Gohir.D10G145400 Gossypium hirsutum HOM05D005430 ORTHO05D007814 1.9e-35 152.9 142 49.3
Gorai.011G162600 Gossypium raimondii HOM05D005430 ORTHO05D007814 1.9e-35 152.9 142 49.3
MD13G1228600 Malus domestica HOM05D005430 ORTHO05D007814 3.3e-35 152.1 146 50.0
Oeu033089.1 Olea europaea HOM05D005430 ORTHO05D007814 3.3e-35 152.1 111 59.5
SGA_v2.0_scaffold2G00855 Striga asiatica HOM05D005430 ORTHO05D007814 3.3e-35 152.1 114 55.3
CSS0041852 Camellia sinensis var. sinensis HOM05D005430 ORTHO05D007814 4.3e-35 151.8 146 51.4
Cpa.g.sc59.85 Carica papaya HOM05D005430 ORTHO05D007814 4.3e-35 151.8 139 49.6
Manes.03G153100 Manihot esculenta HOM05D005430 ORTHO05D007814 4.3e-35 151.8 139 48.2
RcHm_v2.0_Chr4g0396841 Rosa chinensis HOM05D005430 ORTHO05D007814 4.3e-35 151.8 141 49.6
CARHR100160 Cardamine hirsuta HOM05D005430 ORTHO05D007814 7.4e-35 151.0 138 48.6
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 7.4e-35 151.0 135 51.1
Hma1.2p1_0903F.1_g235070 Hydrangea macrophylla HOM05D005430 ORTHO05D007814 9.6e-35 150.6 146 47.3
ClCG05G003630 Citrullus lanatus HOM05D005430 ORTHO05D007814 1.6e-34 149.8 122 54.9
Potri.001G053100 Populus trichocarpa HOM05D005430 ORTHO05D007814 1.6e-34 149.8 142 49.3
AT3G24060 Arabidopsis thaliana HOM05D005430 ORTHO05D007814 2.1e-34 149.4 145 46.9
QL06p023021 Quercus lobata HOM05D005430 ORTHO05D007814 2.8e-34 149.1 115 55.7
THA.LOC104821619 Tarenaya hassleriana HOM05D005430 ORTHO05D007814 2.8e-34 149.1 141 48.9
FAN07G2372 Fragaria x ananassa HOM05D005430 ORTHO05D007814 3.7e-34 148.7 114 55.3
AL3G39310 Arabidopsis lyrata HOM05D005430 ORTHO05D007814 4.8e-34 148.3 145 46.2
CAN.G1745.2 Capsicum annuum HOM05D005430 ORTHO05D007814 4.8e-34 148.3 146 46.6
Manes.15G049100 Manihot esculenta HOM05D005430 ORTHO05D007814 4.8e-34 148.3 142 50.0
Phvul.006G128700 Phaseolus vulgaris HOM05D005430 ORTHO05D007814 4.8e-34 148.3 110 55.5
SalBow3G0850 Salvia bowleyana HOM05D005430 ORTHO05D007814 4.8e-34 148.3 114 52.6
Sp3g21900 Schrenkiella parvula HOM05D005430 ORTHO05D007814 6.2e-34 147.9 113 54.0
Sed0020493 Sechium edule HOM05D005430 ORTHO05D007814 6.2e-34 147.9 142 47.9
VMungo0540G1768 Vigna mungo HOM05D005430 ORTHO05D007814 8.1e-34 147.5 110 55.5
QL11p023894 Quercus lobata HOM05D005430 ORTHO05D007814 1.1e-33 147.1 115 54.8
Sed0021677 Sechium edule HOM05D005430 ORTHO05D007814 1.4e-33 146.7 116 53.4
A01p31010 Brassica napus HOM05D005430 ORTHO05D007814 1.8e-33 146.4 146 47.3
BraA01t03227Z Brassica rapa HOM05D005430 ORTHO05D007814 1.8e-33 146.4 146 47.3
FAN22G2342 Fragaria x ananassa HOM05D005430 ORTHO05D007814 1.8e-33 146.4 111 55.9
AL8G20530 Arabidopsis lyrata HOM05D005430 ORTHO05D007814 3.1e-33 145.6 113 54.0
Migut.N00331 Erythranthe guttata HOM05D005430 ORTHO05D007814 3.1e-33 145.6 146 42.5
FAN17G1087 Fragaria x ananassa HOM05D005430 ORTHO05D007814 4.0e-33 145.2 142 46.5
GSVIVG01029041001 Vitis vinifera HOM05D005430 ORTHO05D007814 4.0e-33 145.2 138 46.4
BcaB04g20397 Brassica carinata HOM05D005430 ORTHO05D007814 5.3e-33 144.8 146 45.9
FvH4_4g05670 Fragaria vesca HOM05D005430 ORTHO05D007814 6.9e-33 144.4 143 46.9
Potri.003G175200 Populus trichocarpa HOM05D005430 ORTHO05D007814 9.0e-33 144.1 141 47.5
Atru.chr4.1803 Acer truncatum HOM05D005430 ORTHO05D007814 1.2e-32 143.7 149 49.0
Sabra03G0128400 Salix brachista HOM05D005430 ORTHO05D007814 1.2e-32 143.7 138 46.4
Oeu041168.1 Olea europaea HOM05D005430 ORTHO05D007814 2.0e-32 142.9 140 45.7
Rhsim06G0013100 Rhododendron simsii HOM05D005430 ORTHO05D007814 3.4e-32 142.1 110 56.4
arahy.Tifrunner.gnm1.ann1.D09HZI Arachis hypogaea HOM05D005430 ORTHO05D007814 4.5e-32 141.7 136 41.9
Sed0027066 Sechium edule HOM05D005430 ORTHO05D007814 4.5e-32 141.7 141 46.8
Glyma.15G129600 Glycine max HOM05D005430 ORTHO05D007814 5.8e-32 141.4 141 45.4
Psat1g167840 Pisum sativum HOM05D005430 ORTHO05D007814 5.8e-32 141.4 143 44.8
Lalb_Chr15g0088741 Lupinus albus HOM05D005430 ORTHO05D007814 7.6e-32 141.0 139 46.8
Thhalv10003022m.g Eutrema salsugineum HOM05D005430 ORTHO05D007814 1.3e-31 140.2 146 44.5
Sed0023963 Sechium edule HOM05D005430 ORTHO05D007814 1.3e-31 140.2 146 45.9
MELO3C023093.2 Cucumis melo HOM05D005430 ORTHO05D007814 1.7e-31 139.8 141 46.8
Solyc09g091360.1 Solanum lycopersicum HOM05D005430 ORTHO05D007814 2.9e-31 139.0 141 46.1
Medtr2g030100 Medicago truncatula HOM05D005430 ORTHO05D007814 3.8e-31 138.7 110 52.7
TPR.G26356 Trifolium pratense HOM05D005430 ORTHO05D007814 3.8e-31 138.7 141 45.4
Sc13g0002820 Simmondsia chinensis HOM05D005430 ORTHO05D007814 4.9e-31 138.3 137 49.6
PGSC0003DMG400016877 Solanum tuberosum HOM05D005430 ORTHO05D007814 4.9e-31 138.3 151 45.7
CsaV3_2G012000 Cucumis sativus L. HOM05D005430 ORTHO05D007814 6.4e-31 137.9 113 51.3
FAN12G0934 Fragaria x ananassa HOM05D005430 ORTHO05D007814 1.1e-30 137.1 142 45.8
CANSAT78G1772 Cannabis sativa HOM05D005430 ORTHO05D007814 1.4e-30 136.7 110 52.7
CANSAT78G2053 Cannabis sativa HOM05D005430 ORTHO05D007814 1.4e-30 136.7 110 52.7
Glyma.09G023500 Glycine max HOM05D005430 ORTHO05D007814 1.4e-30 136.7 142 43.7
Medtr2g030080 Medicago truncatula HOM05D005430 ORTHO05D007814 1.9e-30 136.3 138 44.9
Solyc12g098110.1 Solanum lycopersicum HOM05D005430 ORTHO05D007814 2.4e-30 136.0 145 42.8
Sopen12g032930 Solanum pennellii HOM05D005430 ORTHO05D007814 3.2e-30 135.6 146 45.9
CAN.G706.30 Capsicum annuum HOM05D005430 ORTHO05D007814 7.1e-30 134.4 144 45.8
TPR.G26323 Trifolium pratense HOM05D005430 ORTHO05D007814 6.0e-29 131.3 138 39.9
C01p39510 Brassica napus HOM05D005430 ORTHO05D007814 1.3e-28 130.2 137 46.0
BolC1t03901H Brassica oleracea HOM05D005430 ORTHO05D007814 1.3e-28 130.2 137 46.0
EL10Ac3g06777 Beta vulgaris HOM05D005430 ORTHO05D007814 2.6e-24 115.9 99 54.5
Nitab4.5_0008614g0010 Nicotiana tabacum HOM05D005430 ORTHO05D007814 3.4e-24 115.5 129 42.6
SHI00018 Sapria himalayana HOM05D005430 ORTHO05D007814 4.5e-24 115.2 107 47.7
vmacro22822 Vaccinium macrocarpon HOM05D005430 ORTHO05D007814 1.8e-20 103.2 120 45.0
Actinidia25081 Actinidia chinensis HOM05D005430 ORTHO05D007814 1.9e-19 99.8 115 47.0
Duzib212G0436 Durio zibethinus HOM05D005430 ORTHO05D007814 1.4e-14 83.6 147 29.3
Thecc.04G213200 Theobroma cacao HOM05D005430 ORTHO05D007814 7.2e-14 81.3 142 29.6
Migut.G00604 Erythranthe guttata HOM05D005430 ORTHO05D007814 2.1e-13 79.7 110 32.7
Nitab4.5_0003185g0070 Nicotiana tabacum HOM05D005430 ORTHO05D007814 7.9e-13 77.8 85 43.5
COL.COLO4_05736 Corchorus olitorius HOM05D005430 ORTHO05D007814 3.9e-12 75.5 111 33.3
Gorai.006G055200 Gossypium raimondii HOM05D005430 ORTHO05D007814 3.9e-12 75.5 116 30.2
Thecc.04G213100 Theobroma cacao HOM05D005430 ORTHO05D007814 3.9e-12 75.5 95 33.7
Duzib151G1037 Durio zibethinus HOM05D005430 ORTHO05D007814 6.7e-12 74.7 111 30.6
Gohir.A09G053500 Gossypium hirsutum HOM05D005430 ORTHO05D000119 6.7e-12 74.7 116 30.2
Cpa.g.sc12.57 Carica papaya HOM05D005430 ORTHO05D007814 8.8e-12 74.3 123 32.5
Gohir.D09G053032 Gossypium hirsutum HOM05D005430 ORTHO05D007814 8.8e-12 74.3 116 30.2
Cpa.g.sc59.81 Carica papaya HOM05D005430 ORTHO05D000119 1.5e-11 73.6 111 28.8
Hma1.2p1_1359F.1_g278080 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 2.5e-11 72.8 116 34.5
Potri.003G201300 Populus trichocarpa HOM05D005430 ORTHO05D000119 2.5e-11 72.8 128 28.1
COL.COLO4_05734 Corchorus olitorius HOM05D005430 ORTHO05D007814 3.3e-11 72.4 115 28.7
Oeu024845.1 Olea europaea HOM05D005430 ORTHO05D007814 7.4e-11 71.2 110 28.2
COL.COLO4_34097 Corchorus olitorius HOM05D005430 ORTHO05D007814 1.3e-10 70.5 142 26.1
Migut.H02432 Erythranthe guttata HOM05D005430 ORTHO05D000119 1.3e-10 70.5 106 32.1
Hma1.2p1_0146F.1_g065570 Hydrangea macrophylla HOM05D005430 ORTHO05D000119 1.3e-10 70.5 116 31.9
Hma1.2p1_0903F.1_g234940 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 1.7e-10 70.1 147 32.0
Migut.J01121 Erythranthe guttata HOM05D000256 ORTHO05D000119 2.2e-10 69.7 120 30.0
COL.COLO4_34098 Corchorus olitorius HOM05D000048 ORTHO05D000207 2.8e-10 69.3 116 27.6
Rhsim03G0222400 Rhododendron simsii HOM05D005430 ORTHO05D007814 2.8e-10 69.3 142 31.7
RcHm_v2.0_Chr4g0396541 Rosa chinensis HOM05D000256 ORTHO05D000119 4.8e-10 68.6 106 31.1
Thecc.04G215700 Theobroma cacao HOM05D005430 ORTHO05D007814 4.8e-10 68.6 142 26.8
Gohir.D05G318200 Gossypium hirsutum HOM05D005430 ORTHO05D007814 1.4e-09 67.0 141 25.5
COL.COLO4_34096 Corchorus olitorius HOM05D005430 ORTHO05D007814 6.9e-09 64.7 116 25.9
Hma1.2p1_0170F.1_g075380 Hydrangea macrophylla HOM05D005430 ORTHO05D000119 9.1e-09 64.3 116 27.6
COL.COLO4_05731 Corchorus olitorius HOM05D005430 ORTHO05D007814 1.5e-08 63.5 145 26.2
Hma1.2p1_0785F.1_g217560 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 1.5e-08 63.5 136 25.7
COL.COLO4_05735 Corchorus olitorius HOM05D005430 ORTHO05D007814 2.6e-08 62.8 111 27.9
Potri.001G053300 Populus trichocarpa HOM05D005430 ORTHO05D007814 3.4e-08 62.4 112 23.2
Ciclev10023262m.g Citrus clementina HOM05D005430 ORTHO05D007814 5.9e-08 61.6 83 28.9
COL.COLO4_05737 Corchorus olitorius HOM05D005430 ORTHO05D007814 5.9e-08 61.6 111 26.1
MELO3C033636.2 Cucumis melo HOM05D000256 ORTHO05D000119 7.7e-08 61.2 108 33.3
Hma1.2p1_2329F.1_g320010 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 1.7e-07 60.1 142 29.6
Ciclev10007007m.g Citrus clementina HOM05D008849 ORTHO05D010556 2.9e-07 59.3 109 30.3
COL.COLO4_26204 Corchorus olitorius HOM05D008849 ORTHO05D010556 2.9e-07 59.3 108 26.9
COL.COLO4_05730 Corchorus olitorius HOM05D005430 ORTHO05D007814 3.8e-07 58.9 122 26.2
Gohir.A05G316800 Gossypium hirsutum HOM05D005430 ORTHO05D007814 5.0e-07 58.5 141 24.1
MELO3C021041.2 Cucumis melo HOM05D000256 ORTHO05D000119 6.5e-07 58.2 110 33.6
TAR362G1185 Trochodendron aralioides HOM05D000256 ORTHO05D000119 1.4e-06 57.0 113 24.8
CAN.G1155.35 Capsicum annuum HOM05D000256 ORTHO05D000119 1.9e-06 56.6 149 28.9
CsaV3_7G025570 Cucumis sativus L. HOM05D000256 ORTHO05D000119 1.9e-06 56.6 115 31.3
Sed0001904 Sechium edule HOM05D012637 ORTHO05D015615 1.9e-06 56.6 90 34.4
MELO3C028707.2 Cucumis melo HOM05D000256 ORTHO05D000119 2.5e-06 56.2 105 29.5
MELO3C024160.2 Cucumis melo HOM05D000256 ORTHO05D000119 3.2e-06 55.8 120 30.0
Sed0011653 Sechium edule HOM05D000256 ORTHO05D000119 3.2e-06 55.8 110 30.0
CsaV3_7G025560 Cucumis sativus L. HOM05D000256 ORTHO05D000119 4.2e-06 55.5 106 32.1


User provided reference genes

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