Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0058991 Helianthus annuus HOM05D000318 ORTHO05D009141 3.2e-101 371.7 180 100.0
HanXRQChr14g0455261 Helianthus annuus HOM05D000318 ORTHO05D009141 1.7e-86 322.8 192 84.9
HanXRQChr17g0533341 Helianthus annuus HOM05D000318 ORTHO05D009141 1.7e-46 189.9 160 65.0
ECA246G3976 Erigeron canadensis HOM05D000318 ORTHO05D009141 2.6e-42 176.0 171 54.4
GSVIVG01019805001 Vitis vinifera HOM05D000318 ORTHO05D009141 1.3e-41 173.7 160 56.9
Nn1g01430 Nelumbo nucifera HOM05D000318 ORTHO05D009141 4.1e-40 168.7 160 54.4
TAR629G0468 Trochodendron aralioides HOM05D000318 ORTHO05D009141 5.3e-40 168.3 160 53.8
MD06G1077800 Malus domestica HOM05D000318 ORTHO05D009141 1.2e-39 167.2 160 54.4
PGSC0003DMG400003061 Solanum tuberosum HOM05D000318 ORTHO05D009141 1.6e-39 166.8 160 55.6
Actinidia02023 Actinidia chinensis HOM05D000318 ORTHO05D009141 2.0e-39 166.4 160 53.8
MBI17_g08174_MAGBIO Magnolia biondii HOM05D000318 ORTHO05D009141 4.5e-39 165.2 160 53.1
Nn6g33533 Nelumbo nucifera HOM05D000318 ORTHO05D009141 4.5e-39 165.2 160 55.6
FAN08G2943 Fragaria x ananassa HOM05D005566 ORTHO05D007534 5.9e-39 164.9 160 54.4
FAN13G1151 Fragaria x ananassa HOM05D005566 ORTHO05D007534 5.9e-39 164.9 152 55.9
Sabra01G0081200 Salix brachista HOM05D000318 ORTHO05D009141 5.9e-39 164.9 160 55.6
MELO3C005652.2 Cucumis melo HOM05D000318 ORTHO05D009141 7.7e-39 164.5 165 53.3
CsaV3_5G003020 Cucumis sativus L. HOM05D005566 ORTHO05D007534 7.7e-39 164.5 165 53.3
Nitab4.5_0008905g0050 Nicotiana tabacum HOM05D000318 ORTHO05D009141 7.7e-39 164.5 171 52.6
Rhsim02G0223600 Rhododendron simsii HOM05D005566 ORTHO05D007534 7.7e-39 164.5 160 52.5
Potri.001G107200 Populus trichocarpa HOM05D000318 ORTHO05D009141 1.0e-38 164.1 160 55.6
Solyc08g080730.3 Solanum lycopersicum HOM05D000318 ORTHO05D009141 1.0e-38 164.1 160 54.4
Sopen08g029040 Solanum pennellii HOM05D000318 ORTHO05D009141 1.3e-38 163.7 160 54.4
FvH4_5g01944 Fragaria vesca HOM05D000318 ORTHO05D009141 2.2e-38 162.9 160 53.1
FAN18G1004 Fragaria x ananassa HOM05D005566 ORTHO05D007534 2.2e-38 162.9 160 53.1
RcHm_v2.0_Chr7g0198441 Rosa chinensis HOM05D000318 ORTHO05D009141 2.2e-38 162.9 160 53.8
Peaxi162Scf00714g00122 Petunia axillaris HOM05D000318 ORTHO05D009141 2.9e-38 162.5 160 53.8
Atru.chr13.1694 Acer truncatum HOM05D000318 ORTHO05D009141 3.8e-38 162.2 160 53.1
Actinidia14545 Actinidia chinensis HOM05D000318 ORTHO05D009141 3.8e-38 162.2 160 53.1
CAN.G859.11 Capsicum annuum HOM05D000318 ORTHO05D009141 5.0e-38 161.8 160 53.8
CSS0008231 Camellia sinensis var. sinensis HOM05D000318 ORTHO05D009141 6.5e-38 161.4 160 51.2
QL12p018081 Quercus lobata HOM05D000318 ORTHO05D009141 6.5e-38 161.4 160 53.8
Aqoxy5G04020 Aquilegia oxysepala HOM05D000318 ORTHO05D009141 8.5e-38 161.0 160 52.5
Gohir.A08G180000 Gossypium hirsutum HOM05D000318 ORTHO05D009141 8.5e-38 161.0 160 53.8
Gohir.D08G198800 Gossypium hirsutum HOM05D000318 ORTHO05D009141 8.5e-38 161.0 160 53.8
Sc22g0000220 Simmondsia chinensis HOM05D000318 ORTHO05D009141 8.5e-38 161.0 160 52.5
TPR.G12836 Trifolium pratense HOM05D000318 ORTHO05D009141 1.1e-37 160.6 160 53.1
TWI15G0460 Tripterygium wilfordii HOM05D000318 ORTHO05D009141 1.1e-37 160.6 160 53.8
Duzib084G0779 Durio zibethinus HOM05D000318 ORTHO05D009141 1.5e-37 160.2 160 52.5
Gorai.004G209600 Gossypium raimondii HOM05D000318 ORTHO05D009141 1.5e-37 160.2 160 53.1
Medtr8g097280 Medicago truncatula HOM05D000318 ORTHO05D009141 1.5e-37 160.2 175 51.4
Cpa.g.sc98.26 Carica papaya HOM05D000318 ORTHO05D009141 2.5e-37 159.5 161 53.4
CiPaw.12G095400 Carya illinoinensis HOM05D000318 ORTHO05D009141 3.2e-37 159.1 160 51.2
Manes.02G024300 Manihot esculenta HOM05D000318 ORTHO05D009141 3.2e-37 159.1 160 52.5
COL.COLO4_34426 Corchorus olitorius HOM05D005566 ORTHO05D007534 4.2e-37 158.7 160 52.5
Phvul.002G287500 Phaseolus vulgaris HOM05D000318 ORTHO05D009141 4.2e-37 158.7 160 52.5
PGR031G2759 Punica granatum HOM05D000318 ORTHO05D009141 4.2e-37 158.7 160 53.1
Eucgr.E00568 Eucalyptus grandis HOM05D000318 ORTHO05D009141 5.5e-37 158.3 160 52.5
Lj4g0013226 Lotus japonicus HOM05D000318 ORTHO05D009141 9.4e-37 157.5 160 51.9
Hund11491 Selenicereus undatus HOM05D000318 ORTHO05D009141 9.4e-37 157.5 172 49.4
Haze_08894 Corylus avellana HOM05D000318 ORTHO05D009141 1.2e-36 157.1 160 51.9
CANSAT21G2466 Cannabis sativa HOM05D000318 ORTHO05D009141 2.1e-36 156.4 160 52.5
Psat7g034960 Pisum sativum HOM05D000318 ORTHO05D009141 2.1e-36 156.4 160 51.9
Aa31LG2G710 Aethionema arabicum HOM05D000318 ORTHO05D007251 2.7e-36 156.0 160 51.2
Os10g0503600 Oryza sativa ssp. japonica HOM05D000318 ORTHO05D009141 2.7e-36 156.0 152 53.9
MSTRG.1881 Avicennia marina HOM05D000318 ORTHO05D009141 3.6e-36 155.6 160 51.2
Thecc.03G275200 Theobroma cacao HOM05D000318 ORTHO05D009141 3.6e-36 155.6 160 51.2
arahy.Tifrunner.gnm1.ann1.2A0H1U Arachis hypogaea HOM05D000318 ORTHO05D009141 4.7e-36 155.2 160 51.2
Sed0021933 Sechium edule HOM05D000318 ORTHO05D009141 4.7e-36 155.2 165 51.5
Migut.E01113 Erythranthe guttata HOM05D000318 ORTHO05D009141 6.1e-36 154.8 160 51.9
SalBow1G5358 Salvia bowleyana HOM05D000318 ORTHO05D009141 6.1e-36 154.8 160 51.2
Thhalv10023642m.g Eutrema salsugineum HOM05D000318 ORTHO05D009141 1.0e-35 154.1 160 51.9
Lalb_Chr05g0224931 Lupinus albus HOM05D000318 ORTHO05D009141 1.0e-35 154.1 149 55.7
HPP92_004976 Vanilla planifolia HOM05D000318 ORTHO05D009141 1.0e-35 154.1 152 53.3
Lsat_1_v5_gn_6_87160 Lactuca sativa HOM05D000318 ORTHO05D009141 1.4e-35 153.7 149 52.3
CARHR048150 Cardamine hirsuta HOM05D000318 ORTHO05D009141 2.3e-35 152.9 160 51.2
arahy.Tifrunner.gnm1.ann1.H32RIC Arachis hypogaea HOM05D005566 ORTHO05D007534 5.2e-35 151.8 160 49.4
Carub.0002s0156 Capsella rubella HOM05D000318 ORTHO05D009141 5.2e-35 151.8 160 50.6
AUR62010606 Chenopodium quinoa HOM05D000318 ORTHO05D009141 5.2e-35 151.8 160 51.9
AL2G11880 Arabidopsis lyrata HOM05D000318 ORTHO05D007251 6.8e-35 151.4 160 51.2
AL2G11970 Arabidopsis lyrata HOM05D000318 ORTHO05D007251 6.8e-35 151.4 160 51.2
AL2G12010 Arabidopsis lyrata HOM05D000318 ORTHO05D009141 6.8e-35 151.4 160 51.2
Sp2g01260 Schrenkiella parvula HOM05D000318 ORTHO05D009141 6.8e-35 151.4 160 50.6
Duzib205G0400 Durio zibethinus HOM05D000318 ORTHO05D009141 8.8e-35 151.0 184 46.2
Glyma.05G205600 Glycine max HOM05D000318 ORTHO05D009141 8.8e-35 151.0 149 53.7
Glyma.08G012500 Glycine max HOM05D000318 ORTHO05D009141 8.8e-35 151.0 160 50.6
Ca_17551_v3 Cicer arietinum L. HOM05D000318 ORTHO05D009141 1.2e-34 150.6 149 53.7
PSO782G3853 Papaver somniferum HOM05D000318 ORTHO05D009141 1.2e-34 150.6 149 55.0
AT1G63260 Arabidopsis thaliana HOM05D000318 ORTHO05D009141 1.5e-34 150.2 149 53.0
DCAR_004650 Daucus carota HOM05D000318 ORTHO05D009141 1.5e-34 150.2 149 51.7
BcaC04g22708 Brassica carinata HOM05D000318 ORTHO05D009141 2.0e-34 149.8 160 50.0
BcaC06g31942 Brassica carinata HOM05D000318 ORTHO05D009141 2.0e-34 149.8 161 49.7
A09p13550 Brassica napus HOM05D000318 ORTHO05D009141 2.0e-34 149.8 160 50.0
C09p16060 Brassica napus HOM05D000318 ORTHO05D009141 2.0e-34 149.8 160 50.0
BolC9t54523H Brassica oleracea HOM05D000318 ORTHO05D009141 2.0e-34 149.8 160 50.0
BraA09t37006Z Brassica rapa HOM05D000318 ORTHO05D009141 2.0e-34 149.8 160 50.0
PSO063G4890 Papaver somniferum HOM05D000318 ORTHO05D009141 2.6e-34 149.4 149 54.4
vmacro11304 Vaccinium macrocarpon HOM05D000318 ORTHO05D009141 2.6e-34 149.4 186 45.2
EL10Ac5g12768 Beta vulgaris HOM05D000318 ORTHO05D009141 5.7e-34 148.3 160 48.8
HanXRQChr03g0086561 Helianthus annuus HOM05D000318 ORTHO05D009141 1.3e-33 147.1 160 49.4
Zm00001eb044140 Zea mays HOM05D000318 ORTHO05D009141 1.3e-33 147.1 160 48.8
SEGI_21294 Sequoiadendron giganteum HOM05D000318 ORTHO05D009141 1.7e-33 146.7 149 51.7
Cc08_g14340 Coffea canephora HOM05D000318 ORTHO05D009141 3.7e-33 145.6 178 47.2
Ciclev10021645m.g Citrus clementina HOM05D000318 ORTHO05D009141 2.0e-31 139.8 153 51.0
ClCG01G002940 Citrullus lanatus HOM05D005566 ORTHO05D007534 2.7e-31 139.4 142 54.9
Lj8A233G54 Lonicera japonica HOM05D000318 ORTHO05D009141 1.0e-30 137.5 118 55.1
AUR62017247 Chenopodium quinoa HOM05D000318 ORTHO05D009141 1.2e-28 130.6 153 48.4
VMungo0251G0790 Vigna mungo HOM05D000032 ORTHO05D002227 3.6e-28 129.0 118 53.4
Ah.12g057310 Amaranthus hybridus HOM05D000318 ORTHO05D009141 1.4e-27 127.1 144 50.0
ECA240G2842 Erigeron canadensis HOM05D000318 ORTHO05D009141 6.8e-27 124.8 101 59.4
arahy.Tifrunner.gnm1.ann1.8RU08H Arachis hypogaea HOM05D005566 ORTHO05D007534 2.6e-26 122.9 160 45.0
PSO143G0001 Papaver somniferum HOM05D000318 ORTHO05D009141 7.5e-26 121.3 131 51.1
Nitab4.5_0001356g0040 Nicotiana tabacum HOM05D000318 ORTHO05D009141 7.0e-24 114.8 173 43.9
CSS0012007 Camellia sinensis var. sinensis HOM05D000318 ORTHO05D009141 1.0e-22 110.9 93 57.0
SMO118G0270 Selaginella moellendorffii HOM05D000318 ORTHO05D009141 3.3e-21 105.9 146 37.7
Medtr8g097250 Medicago truncatula HOM05D000318 ORTHO05D009141 5.2e-19 98.6 91 56.0
Prupe.5G095600 Prunus persica HOM05D000318 ORTHO05D009141 6.8e-19 98.2 71 63.4
Dinv38973 Davidia involucrata HOM05D000318 ORTHO05D009141 1.5e-18 97.1 66 65.2
AagrBONN_evm.TU.Sc2ySwM_228.5548 Anthoceros agrestis HOM05D000318 ORTHO05D009141 2.0e-18 96.7 160 34.4
ATR0680G424 Amborella trichopoda HOM05D000318 ORTHO05D009141 1.6e-15 87.0 66 60.6
CSS0026407 Camellia sinensis var. sinensis HOM05D000318 ORTHO05D009141 1.1e-13 80.9 104 41.3
Pp3c7_23740 Physcomitrium patens HOM05D000318 ORTHO05D000420 8.9e-11 71.2 137 31.4
GSVIVG01013637001 Vitis vinifera HOM05D000318 ORTHO05D009141 1.2e-10 70.9 75 49.3
Pp3c19_5840 Physcomitrium patens HOM05D000318 ORTHO05D000420 2.0e-10 70.1 140 33.6
Lsat_1_v5_gn_9_44660 Lactuca sativa HOM05D000318 ORTHO05D009141 2.6e-10 69.7 90 43.3
Pp3c2_26590 Physcomitrium patens HOM05D000318 ORTHO05D000420 5.8e-10 68.6 138 32.6
SGA_v2.0_scaffold144G35960 Striga asiatica HOM05D000250 ORTHO05D002850 9.8e-10 67.8 78 44.9
MD16G1272800 Malus domestica HOM05D000318 ORTHO05D000420 4.9e-09 65.5 149 27.5
Sc18g0003270 Simmondsia chinensis HOM05D000318 ORTHO05D000420 4.9e-09 65.5 161 28.0
BcaNung02989 Brassica carinata HOM05D000318 ORTHO05D000420 1.9e-08 63.5 162 28.4
Cfa012914 Carpinus fangiana HOM05D000318 ORTHO05D000420 1.9e-08 63.5 162 27.8
arahy.Tifrunner.gnm1.ann1.9I36N1 Arachis hypogaea HOM05D000318 ORTHO05D000420 4.1e-08 62.4 155 29.0
arahy.Tifrunner.gnm1.ann1.V2Z0GB Arachis hypogaea HOM05D000318 ORTHO05D000420 4.1e-08 62.4 155 29.0
Sed0014587 Sechium edule HOM05D000318 ORTHO05D000420 7.0e-08 61.6 151 27.2
SMO117G0247 Selaginella moellendorffii HOM05D000318 ORTHO05D000420 7.0e-08 61.6 148 25.7
Aa31sc736G40 Aethionema arabicum HOM05D000318 ORTHO05D000420 9.2e-08 61.2 138 28.3
Eucgr.C00218 Eucalyptus grandis HOM05D000318 ORTHO05D000420 9.2e-08 61.2 154 26.0
SMO356G0702 Selaginella moellendorffii HOM05D000318 ORTHO05D000420 9.2e-08 61.2 149 29.5
TWI81G0091 Tripterygium wilfordii HOM05D000318 ORTHO05D000420 9.2e-08 61.2 149 26.8
Ah.14g084150 Amaranthus hybridus HOM05D000318 ORTHO05D000420 1.6e-07 60.5 151 28.5
C01p08620 Brassica napus HOM05D000318 ORTHO05D000420 1.6e-07 60.5 158 27.2
Ciclev10010303m.g Citrus clementina HOM05D000318 ORTHO05D000420 1.6e-07 60.5 158 24.1
C08p39700 Brassica napus HOM05D000318 ORTHO05D000420 2.0e-07 60.1 157 26.1
Prupe.5G034100 Prunus persica HOM05D000318 ORTHO05D000420 2.0e-07 60.1 149 26.8
Eucgr.C01243 Eucalyptus grandis HOM05D000318 ORTHO05D000420 2.7e-07 59.7 157 28.7
RcHm_v2.0_Chr7g0209961 Rosa chinensis HOM05D000318 ORTHO05D000420 2.7e-07 59.7 149 26.8
BcaC09g51834 Brassica carinata HOM05D000318 ORTHO05D000420 3.5e-07 59.3 158 27.2
BolC1t00844H Brassica oleracea HOM05D000318 ORTHO05D000420 3.5e-07 59.3 158 27.2
CsaV3_1G029390 Cucumis sativus L. HOM05D000318 ORTHO05D000420 3.5e-07 59.3 155 27.7
Actinidia03368 Actinidia chinensis HOM05D000318 ORTHO05D000420 4.6e-07 58.9 163 25.8
Gohir.A08G155900 Gossypium hirsutum HOM05D000318 ORTHO05D000420 4.6e-07 58.9 153 26.8
Gorai.004G184400 Gossypium raimondii HOM05D000318 ORTHO05D000420 4.6e-07 58.9 153 26.8
A09p56720 Brassica napus HOM05D000318 ORTHO05D000420 7.8e-07 58.2 157 24.8
BraA09t41063Z Brassica rapa HOM05D000318 ORTHO05D000420 7.8e-07 58.2 157 24.8
CARHR238330 Cardamine hirsuta HOM05D000318 ORTHO05D000420 7.8e-07 58.2 143 27.3
Ciclev10032405m.g Citrus clementina HOM05D000318 ORTHO05D000420 7.8e-07 58.2 151 27.2
Gohir.D08G176500 Gossypium hirsutum HOM05D000318 ORTHO05D000420 7.8e-07 58.2 150 26.7
BcaC07g40972 Brassica carinata HOM05D000318 ORTHO05D000420 1.0e-06 57.8 157 25.5
BolC8t51540H Brassica oleracea HOM05D000318 ORTHO05D000420 1.0e-06 57.8 157 25.5
Glyma.17G069300 Glycine max HOM05D000318 ORTHO05D000420 1.3e-06 57.4 155 26.5
Gohir.D11G038300 Gossypium hirsutum HOM05D000318 ORTHO05D000420 1.3e-06 57.4 158 27.2
Prupe.5G212900 Prunus persica HOM05D000318 ORTHO05D000420 1.3e-06 57.4 172 26.2
QL02p095432 Quercus lobata HOM05D000318 ORTHO05D000420 1.3e-06 57.4 150 27.3
Rhsim01G0013000 Rhododendron simsii HOM05D000318 ORTHO05D000420 1.3e-06 57.4 164 27.4
Glyma.01G095700 Glycine max HOM05D000318 ORTHO05D000420 1.7e-06 57.0 163 26.4
Phvul.003G284700 Phaseolus vulgaris HOM05D000318 ORTHO05D000420 1.7e-06 57.0 149 26.8
VMungo0251G0703 Vigna mungo HOM05D000318 ORTHO05D000420 1.7e-06 57.0 149 26.2
VMungo1215G0365 Vigna mungo HOM05D000318 ORTHO05D000420 1.7e-06 57.0 154 26.6
CSS0017681 Camellia sinensis var. sinensis HOM05D000318 ORTHO05D000420 2.3e-06 56.6 156 28.8
CSS0019412 Camellia sinensis var. sinensis HOM05D000318 ORTHO05D000420 2.3e-06 56.6 156 28.8
CANSAT11G1150 Cannabis sativa HOM05D000318 ORTHO05D000420 2.3e-06 56.6 162 22.2
CAN.G298.21 Capsicum annuum HOM05D000318 ORTHO05D000420 2.3e-06 56.6 149 25.5
Eucgr.E00275 Eucalyptus grandis HOM05D000318 ORTHO05D000420 2.3e-06 56.6 149 25.5
Lj5A141T86 Lonicera japonica HOM05D000318 ORTHO05D000420 2.3e-06 56.6 168 24.4
MBI14_g37222_MAGBIO Magnolia biondii HOM05D000318 ORTHO05D000420 2.3e-06 56.6 151 27.2
CiPaw.08G001300 Carya illinoinensis HOM05D000318 ORTHO05D000420 3.0e-06 56.2 162 24.7
MD06G1035600 Malus domestica HOM05D000318 ORTHO05D000420 3.0e-06 56.2 149 24.8
DCAR_008258 Daucus carota HOM05D000318 ORTHO05D000420 3.9e-06 55.8 149 25.5
Lj4g0026647 Lotus japonicus HOM05D000318 ORTHO05D000420 3.9e-06 55.8 150 26.7
SEGI_14748 Sequoiadendron giganteum HOM05D000318 ORTHO05D000420 3.9e-06 55.8 163 25.2
SEGI_31274 Sequoiadendron giganteum HOM05D000318 ORTHO05D000420 3.9e-06 55.8 151 27.8
GSVIVG01013147001 Vitis vinifera HOM05D000318 ORTHO05D000420 3.9e-06 55.8 163 25.2
Dinv42790 Davidia involucrata HOM05D000318 ORTHO05D000420 5.0e-06 55.5 151 29.1
Dinv43311 Davidia involucrata HOM05D000318 ORTHO05D000420 5.0e-06 55.5 151 29.1
FAN04G0446 Fragaria x ananassa HOM05D000318 ORTHO05D009141 5.0e-06 55.5 116 36.2
Lj6g0020177 Lotus japonicus HOM05D000318 ORTHO05D000420 5.0e-06 55.5 162 25.9
QL12p004945 Quercus lobata HOM05D000318 ORTHO05D000420 5.0e-06 55.5 149 25.5
Thecc.03G113800 Theobroma cacao HOM05D000318 ORTHO05D000420 5.0e-06 55.5 170 26.5
Gorai.009G031000 Gossypium raimondii HOM05D000318 ORTHO05D000420 6.6e-06 55.1 140 25.7
Lj9A727T18 Lonicera japonica HOM05D000318 ORTHO05D000420 6.6e-06 55.1 160 28.1
Actinidia25970 Actinidia chinensis HOM05D000318 ORTHO05D000420 8.6e-06 54.7 163 24.5
A01p07740 Brassica napus HOM05D000318 ORTHO05D000420 8.6e-06 54.7 140 27.9
BraA01t00717Z Brassica rapa HOM05D000318 ORTHO05D000420 8.6e-06 54.7 140 27.9


User provided reference genes

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