Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0058081 Helianthus annuus HOM05D004240 ORTHO05D005082 1.2e-32 142.5 67 100.0
HanXRQChr10g0278161 Helianthus annuus HOM05D004240 ORTHO05D005082 3.1e-17 91.3 54 81.5
Lsat_1_v5_gn_6_104280 Lactuca sativa HOM05D004240 ORTHO05D005082 9.0e-17 89.7 54 79.6
ECA247G1074 Erigeron canadensis HOM05D004240 ORTHO05D005082 4.5e-16 87.4 53 79.2
ECA246G1644 Erigeron canadensis HOM05D004240 ORTHO05D005082 1.3e-15 85.9 54 75.9
Hma1.2p1_1613F.1_g293659 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 8.4e-15 83.2 54 72.2
HanXRQChr05g0163111 Helianthus annuus HOM05D004240 ORTHO05D005082 1.1e-14 82.8 54 74.1
DCAR_014024 Daucus carota HOM05D004240 ORTHO05D005082 1.9e-14 82.0 54 72.2
CiPaw.04G103700 Carya illinoinensis HOM05D004240 ORTHO05D005082 5.5e-14 80.5 54 70.4
DCAR_010173 Daucus carota HOM05D004240 ORTHO05D005082 5.5e-14 80.5 54 70.4
GSVIVG01009082001 Vitis vinifera HOM05D004240 ORTHO05D005082 5.5e-14 80.5 54 70.4
Cfa002500 Carpinus fangiana HOM05D004240 ORTHO05D005082 1.2e-13 79.3 54 68.5
Haze_24725 Corylus avellana HOM05D004240 ORTHO05D005082 1.2e-13 79.3 54 68.5
Sed0022777 Sechium edule HOM05D004240 ORTHO05D005082 1.2e-13 79.3 54 70.4
Cc06_g04150 Coffea canephora HOM05D004240 ORTHO05D005082 2.1e-13 78.6 55 70.9
Dinv08862 Davidia involucrata HOM05D004240 ORTHO05D005082 2.1e-13 78.6 54 68.5
Rhsim08G0013500 Rhododendron simsii HOM05D004240 ORTHO05D005082 2.7e-13 78.2 54 66.7
Rhsim10G0001600 Rhododendron simsii HOM05D004240 ORTHO05D005082 2.7e-13 78.2 54 66.7
SalBow1G3565 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.7e-13 78.2 66 57.6
ClCG09G002640 Citrullus lanatus HOM05D004240 ORTHO05D005082 3.5e-13 77.8 54 68.5
TAR381G0524 Trochodendron aralioides HOM05D004240 ORTHO05D005082 4.6e-13 77.4 54 68.5
TAR628G1673 Trochodendron aralioides HOM05D004240 ORTHO05D005082 4.6e-13 77.4 54 68.5
CSS0016123 Camellia sinensis var. sinensis HOM05D004240 ORTHO05D005082 6.0e-13 77.0 53 67.9
Cpa.g.sc79.33 Carica papaya HOM05D004240 ORTHO05D005082 7.9e-13 76.6 54 68.5
Nn1g05456 Nelumbo nucifera HOM05D004240 ORTHO05D005082 7.9e-13 76.6 54 68.5
Sed0017764 Sechium edule HOM05D004240 ORTHO05D005082 7.9e-13 76.6 54 66.7
THA.LOC104816621 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 7.9e-13 76.6 53 67.9
AUR62011808 Chenopodium quinoa HOM05D004240 ORTHO05D005082 1.0e-12 76.3 54 66.7
MELO3C023395.2 Cucumis melo HOM05D004240 ORTHO05D005082 1.0e-12 76.3 54 66.7
CsaV3_7G032690 Cucumis sativus L. HOM05D004240 ORTHO05D005082 1.0e-12 76.3 54 66.7
Manes.18G063900 Manihot esculenta HOM05D004240 ORTHO05D005082 1.0e-12 76.3 54 66.7
Nitab4.5_0002632g0100 Nicotiana tabacum HOM05D004240 ORTHO05D005082 1.0e-12 76.3 49 69.4
Oeu009430.2 Olea europaea HOM05D004240 ORTHO05D005082 1.0e-12 76.3 54 66.7
Oeu048963.1 Olea europaea HOM05D004240 ORTHO05D005082 1.0e-12 76.3 54 66.7
MD02G1257900 Malus domestica HOM05D004240 ORTHO05D005082 1.3e-12 75.9 47 72.3
QL06p048114 Quercus lobata HOM05D004240 ORTHO05D005082 1.3e-12 75.9 54 66.7
Rhsim02G0249800 Rhododendron simsii HOM05D004240 ORTHO05D005082 1.3e-12 75.9 54 64.8
THA.LOC104813109 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 1.3e-12 75.9 49 71.4
TWI36G0317 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 1.3e-12 75.9 54 64.8
unitig_32.g11785 Utricularia gibba HOM05D004240 ORTHO05D005082 1.3e-12 75.9 54 68.5
arahy.Tifrunner.gnm1.ann1.29DKEH Arachis hypogaea HOM05D004240 ORTHO05D005082 1.8e-12 75.5 54 66.7
arahy.Tifrunner.gnm1.ann1.CGL9LR Arachis hypogaea HOM05D004240 ORTHO05D005082 1.8e-12 75.5 54 66.7
arahy.Tifrunner.gnm1.ann1.LFKE78 Arachis hypogaea HOM05D004240 ORTHO05D005082 1.8e-12 75.5 54 66.7
arahy.Tifrunner.gnm1.ann1.US6JCC Arachis hypogaea HOM05D004240 ORTHO05D005082 1.8e-12 75.5 54 66.7
Dinv44804 Davidia involucrata HOM05D004240 ORTHO05D005082 1.8e-12 75.5 54 66.7
Duzib041G0743 Durio zibethinus HOM05D004240 ORTHO05D005082 1.8e-12 75.5 54 66.7
Duzib093G0975 Durio zibethinus HOM05D004240 ORTHO05D005082 1.8e-12 75.5 54 66.7
Manes.02G149200 Manihot esculenta HOM05D004240 ORTHO05D005082 1.8e-12 75.5 54 64.8
Prupe.1G522900 Prunus persica HOM05D004240 ORTHO05D005082 1.8e-12 75.5 47 72.3
Prupe.6G102500 Prunus persica HOM05D004240 ORTHO05D005082 1.8e-12 75.5 47 72.3
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 1.8e-12 75.5 54 66.7
Thecc.08G102200 Theobroma cacao HOM05D004240 ORTHO05D005082 1.8e-12 75.5 54 66.7
vmacro18578 Vaccinium macrocarpon HOM05D004240 ORTHO05D005082 1.8e-12 75.5 49 69.4
Ah.06g192140 Amaranthus hybridus HOM05D004240 ORTHO05D005082 2.3e-12 75.1 55 60.0
Ciclev10013208m.g Citrus clementina HOM05D004240 ORTHO05D005082 2.3e-12 75.1 54 66.7
Gohir.A06G033500 Gossypium hirsutum HOM05D004240 ORTHO05D005082 2.3e-12 75.1 54 66.7
Gohir.D06G034400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 2.3e-12 75.1 54 66.7
Gorai.010G037900 Gossypium raimondii HOM05D004240 ORTHO05D005082 2.3e-12 75.1 54 66.7
MD08G1188400 Malus domestica HOM05D004240 ORTHO05D005082 2.3e-12 75.1 47 70.2
Nn5g30001 Nelumbo nucifera HOM05D004240 ORTHO05D005082 2.3e-12 75.1 54 66.7
Nitab4.5_0000786g0040 Nicotiana tabacum HOM05D004240 ORTHO05D005082 2.3e-12 75.1 54 66.7
QL12p001007 Quercus lobata HOM05D004240 ORTHO05D005082 2.3e-12 75.1 54 64.8
Sc20g0000280 Simmondsia chinensis HOM05D004240 ORTHO05D005082 2.3e-12 75.1 49 71.4
EL10Ac6g15351 Beta vulgaris HOM05D004240 ORTHO05D005082 3.0e-12 74.7 54 66.7
Eucgr.F00376 Eucalyptus grandis HOM05D004240 ORTHO05D005082 3.0e-12 74.7 49 69.4
Glyma.04G099100 Glycine max HOM05D004240 ORTHO05D005082 3.0e-12 74.7 54 66.7
Glyma.06G100800 Glycine max HOM05D004240 ORTHO05D005082 3.0e-12 74.7 54 66.7
Phvul.009G033000 Phaseolus vulgaris HOM05D004240 ORTHO05D005082 3.0e-12 74.7 49 71.4
Nitab4.5_0000101g0440 Nicotiana tabacum HOM05D004240 ORTHO05D005082 3.9e-12 74.3 47 68.1
Nitab4.5_0003599g0030 Nicotiana tabacum HOM05D004240 ORTHO05D005082 3.9e-12 74.3 54 66.7
SalBow1G1735 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.9e-12 74.3 56 64.3
SalBow1G5084 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.9e-12 74.3 56 64.3
SalBow1G5590 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.9e-12 74.3 54 64.8
SalBow1G6918 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.9e-12 74.3 56 64.3
SalBow1G8490 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.9e-12 74.3 56 64.3
SalBow8G1434 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.9e-12 74.3 54 64.8
SalBow8G1852 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.9e-12 74.3 54 64.8
Ah.06g187980 Amaranthus hybridus HOM05D004240 ORTHO05D005082 5.1e-12 73.9 54 64.8
AUR62041013 Chenopodium quinoa HOM05D004240 ORTHO05D005082 5.1e-12 73.9 54 64.8
PSO447G0232 Papaver somniferum HOM05D004240 ORTHO05D005082 5.1e-12 73.9 54 63.0
PSO541G3534 Papaver somniferum HOM05D004240 ORTHO05D005082 5.1e-12 73.9 54 63.0
PSO675G3208 Papaver somniferum HOM05D004240 ORTHO05D005082 5.1e-12 73.9 54 63.0
PSO700G0162 Papaver somniferum HOM05D004240 ORTHO05D005082 5.1e-12 73.9 54 63.0
Hund06956 Selenicereus undatus HOM05D004240 ORTHO05D005082 5.1e-12 73.9 54 64.8
Atru.chr8.235 Acer truncatum HOM05D004240 ORTHO05D005082 6.7e-12 73.6 54 64.8
Migut.H02239 Erythranthe guttata HOM05D004240 ORTHO05D005082 6.7e-12 73.6 54 64.8
Peaxi162Scf00030g02315 Petunia axillaris HOM05D004240 ORTHO05D005082 6.7e-12 73.6 54 63.0
Peaxi162Scf00074g01332 Petunia axillaris HOM05D004240 ORTHO05D005082 6.7e-12 73.6 54 63.0
Sabra06G0052600 Salix brachista HOM05D004240 ORTHO05D005082 6.7e-12 73.6 54 66.7
Aqoxy2G03827 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 8.7e-12 73.2 54 64.8
CANSAT01G1074 Cannabis sativa HOM05D004240 ORTHO05D005082 8.7e-12 73.2 55 61.8
CDE10G0460 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 8.7e-12 73.2 54 63.0
CDE10G1133 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 8.7e-12 73.2 54 63.0
PGR031G0804 Punica granatum HOM05D004240 ORTHO05D005082 8.7e-12 73.2 53 66.0
AUR62004912 Chenopodium quinoa HOM05D004240 ORTHO05D005082 1.1e-11 72.8 54 63.0
Potri.005G161600 Populus trichocarpa HOM05D004240 ORTHO05D005082 1.1e-11 72.8 54 64.8
Sabra05G0122300 Salix brachista HOM05D004240 ORTHO05D005082 1.1e-11 72.8 54 64.8
AUR62043370 Chenopodium quinoa HOM05D004240 ORTHO05D005082 1.5e-11 72.4 49 69.4
TWI12G0685 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 1.5e-11 72.4 54 63.0
COL.COLO4_12008 Corchorus olitorius HOM05D004240 ORTHO05D005082 1.9e-11 72.0 54 63.0
Thhalv10029093m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 1.9e-11 72.0 53 62.3
Potri.006G070700 Populus trichocarpa HOM05D004240 ORTHO05D005082 1.9e-11 72.0 54 64.8
PGR004G1351 Punica granatum HOM05D004240 ORTHO05D005082 1.9e-11 72.0 54 63.0
Aa31LG9G14690 Aethionema arabicum HOM05D004240 ORTHO05D005082 2.5e-11 71.6 53 62.3
Thhalv10028005m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 2.5e-11 71.6 53 62.3
SalBow1G7711 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.5e-11 71.6 54 63.0
HPP92_003085 Vanilla planifolia HOM05D000111 ORTHO05D000134 2.5e-11 71.6 46 71.7
Peaxi162Scf00701g00514 Petunia axillaris HOM05D004240 ORTHO05D005082 3.3e-11 71.2 49 65.3
Aqoxy2G00790 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 4.3e-11 70.9 66 56.1
CAN.G857.13 Capsicum annuum HOM05D004240 ORTHO05D005082 4.3e-11 70.9 54 59.3
Solyc04g074690.3 Solanum lycopersicum HOM05D004240 ORTHO05D005082 4.3e-11 70.9 54 59.3
Sopen04g029660 Solanum pennellii HOM05D004240 ORTHO05D005082 4.3e-11 70.9 54 59.3
PGSC0003DMG400030836 Solanum tuberosum HOM05D004240 ORTHO05D005082 4.3e-11 70.9 54 59.3
Lalb_Chr23g0270361 Lupinus albus HOM05D004240 ORTHO05D005082 5.6e-11 70.5 49 67.3
CAN.G900.47 Capsicum annuum HOM05D004240 ORTHO05D005082 7.4e-11 70.1 49 63.3
FvH4_5g36580 Fragaria vesca HOM05D004240 ORTHO05D005082 7.4e-11 70.1 54 57.4
FAN13G1462 Fragaria x ananassa HOM05D004240 ORTHO05D005082 7.4e-11 70.1 54 57.4
FAN15G0929 Fragaria x ananassa HOM05D004240 ORTHO05D005082 7.4e-11 70.1 54 57.4
FAN18G4030 Fragaria x ananassa HOM05D004240 ORTHO05D005082 7.4e-11 70.1 54 57.4
RcHm_v2.0_Chr3g0492081 Rosa chinensis HOM05D004240 ORTHO05D005082 7.4e-11 70.1 54 57.4
RcHm_v2.0_Chr7g0242281 Rosa chinensis HOM05D004240 ORTHO05D005082 7.4e-11 70.1 54 57.4
SalBow5G4864 Salvia bowleyana HOM05D004240 ORTHO05D005082 9.6e-11 69.7 49 67.3
AL6G41500 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 1.3e-10 69.3 53 60.4
FAN04G0949 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.3e-10 69.3 54 55.6
Psat2g132800 Pisum sativum HOM05D004240 ORTHO05D005082 1.3e-10 69.3 54 59.3
Psat4g105040 Pisum sativum HOM05D004240 ORTHO05D005082 1.3e-10 69.3 54 59.3
FAN20G0937 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.6e-10 68.9 54 57.4
FvH4_2g10720 Fragaria vesca HOM05D004240 ORTHO05D005082 2.1e-10 68.6 54 55.6
FAN08G1894 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.1e-10 68.6 54 55.6
FAN24G1588 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.1e-10 68.6 54 55.6
Hma1.2p1_1148F.1_g261590 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 2.1e-10 68.6 49 69.4
AT5G39800 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 2.8e-10 68.2 50 60.0
AT5G40080 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 3.7e-10 67.8 50 60.0
Ca_06044_v3 Cicer arietinum L. HOM05D004240 ORTHO05D005082 4.8e-10 67.4 54 55.6
SalBow1G1053 Salvia bowleyana HOM05D004240 ORTHO05D005082 8.2e-10 66.6 52 59.6
Zm00001eb032040 Zea mays HOM05D004240 ORTHO05D005082 8.2e-10 66.6 55 61.8
Zm00001eb211130 Zea mays HOM05D004240 ORTHO05D005082 8.2e-10 66.6 55 60.0
AT4G09012 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 1.1e-09 66.2 47 61.7
BcaC01g04739 Brassica carinata HOM05D004240 ORTHO05D005082 1.1e-09 66.2 53 56.6
A03p28370 Brassica napus HOM05D004240 ORTHO05D005082 1.1e-09 66.2 53 56.6
C03p34300 Brassica napus HOM05D004240 ORTHO05D005082 1.1e-09 66.2 53 56.6
BolC3t15739H Brassica oleracea HOM05D004240 ORTHO05D005082 1.1e-09 66.2 53 56.6
BraA03t12042Z Brassica rapa HOM05D004240 ORTHO05D005082 1.1e-09 66.2 53 56.6
Sp6g08590 Schrenkiella parvula HOM05D004240 ORTHO05D005082 1.4e-09 65.9 53 56.6
Carub.0006s2760 Capsella rubella HOM05D004240 ORTHO05D005082 2.4e-09 65.1 53 56.6
Carub.0007s3595 Capsella rubella HOM05D004240 ORTHO05D005082 2.4e-09 65.1 50 58.0
CARHR262430 Cardamine hirsuta HOM05D004240 ORTHO05D005082 2.4e-09 65.1 50 56.0
Medtr5g045910 Medicago truncatula HOM05D000029 ORTHO05D002519 4.0e-09 64.3 54 57.4
Atru.chr13.1119 Acer truncatum HOM05D004240 ORTHO05D005082 5.3e-09 63.9 42 69.0
BcaB01g01378 Brassica carinata HOM05D004240 ORTHO05D005082 9.0e-09 63.2 53 54.7
BcaC04g20940 Brassica carinata HOM05D004240 ORTHO05D005082 9.0e-09 63.2 53 54.7
A09p29740 Brassica napus HOM05D004240 ORTHO05D005082 9.0e-09 63.2 53 54.7
C09p37710 Brassica napus HOM05D004240 ORTHO05D005082 9.0e-09 63.2 53 54.7
BolC9t56602H Brassica oleracea HOM05D004240 ORTHO05D005082 9.0e-09 63.2 53 54.7
BraA09t38538Z Brassica rapa HOM05D004240 ORTHO05D005082 9.0e-09 63.2 53 54.7
AL7G50490 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 3.4e-08 61.2 50 54.0
BcaB01g02826 Brassica carinata HOM05D004240 ORTHO05D005082 4.5e-08 60.8 53 52.8
Cc03_g14470 Coffea canephora HOM05D004240 ORTHO05D005082 9.3e-06 53.1 35 65.7


User provided reference genes

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