Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 0.0e+00 1202.2 630 100.0
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 1.4e-268 929.5 631 77.5
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 1.4e-265 919.5 625 79.2
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 4.8e-245 851.3 633 70.9
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 6.3e-213 744.6 636 63.2
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 5.0e-210 734.9 631 62.1
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 6.3e-205 718.0 631 60.5
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 8.6e-202 707.6 630 61.6
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 1.5e-201 706.8 633 60.3
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 2.8e-200 702.6 598 62.9
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 3.7e-197 692.2 646 58.7
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 1.6e-195 686.8 630 61.4
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 5.0e-194 681.8 639 58.2
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 4.7e-192 675.2 658 57.9
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 1.4e-191 673.7 641 56.9
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 4.0e-191 672.2 639 57.3
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 5.2e-191 671.8 647 57.5
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 5.2e-191 671.8 631 57.4
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 5.2e-191 671.8 653 57.3
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 5.2e-191 671.8 634 59.5
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 1.5e-190 670.2 639 56.7
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 2.2e-189 666.4 638 57.8
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 2.2e-189 666.4 640 56.6
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 4.9e-189 665.2 639 58.4
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 1.9e-188 663.3 636 57.4
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 1.9e-188 663.3 632 57.6
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 3.2e-188 662.5 639 57.0
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 3.2e-188 662.5 639 57.0
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 1.6e-187 660.2 637 56.8
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 2.0e-187 659.8 633 56.6
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 6.0e-187 658.3 632 57.3
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 3.0e-186 656.0 632 57.8
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 3.9e-186 655.6 650 57.2
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 5.0e-186 655.2 632 57.1
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 1.6e-184 650.2 633 56.1
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 1.4e-183 647.1 633 55.3
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 5.2e-183 645.2 635 56.2
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 1.1e-180 637.5 639 55.6
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 1.4e-180 637.1 622 56.9
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 1.2e-179 634.0 648 55.1
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 2.3e-178 629.8 647 54.1
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.9e-178 629.0 647 54.3
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.1e-177 627.5 647 53.8
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.5e-177 627.1 647 54.1
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 1.2e-176 624.0 642 55.8
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.8e-176 622.9 647 53.5
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 2.8e-176 622.9 637 54.8
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 8.1e-176 621.3 647 53.5
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 8.1e-176 621.3 647 53.5
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 7.6e-174 614.8 647 53.2
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 8.4e-173 611.3 635 54.6
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 4.1e-172 609.0 642 53.4
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 9.2e-172 607.8 636 52.2
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 1.2e-171 607.4 631 54.4
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 1.6e-171 607.1 637 53.5
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 2.7e-171 606.3 631 55.3
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 8.6e-170 601.3 647 54.9
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 1.9e-169 600.1 636 53.5
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 5.6e-169 598.6 633 52.9
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 1.2e-168 597.4 632 54.0
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 3.6e-168 595.9 632 53.5
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 3.4e-166 589.3 640 51.9
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 9.9e-166 587.8 627 52.2
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 1.3e-165 587.4 625 53.0
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 1.7e-165 587.0 625 53.0
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 2.2e-165 586.6 633 52.3
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 3.8e-165 585.9 628 52.2
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 3.2e-164 582.8 628 52.4
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 4.6e-163 578.9 647 50.1
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 1.0e-162 577.8 553 60.0
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 2.3e-162 576.6 629 51.4
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 8.7e-162 574.7 638 53.0
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 1.1e-161 574.3 636 50.5
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 1.5e-161 573.9 645 50.5
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 1.3e-160 570.9 641 49.1
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 4.8e-160 568.9 635 53.1
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 6.2e-160 568.5 586 54.8
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 8.1e-160 568.2 656 49.7
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 4.0e-159 565.8 649 50.2
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 3.4e-158 562.8 635 51.2
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 7.6e-158 561.6 628 51.6
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 1.7e-157 560.5 634 51.1
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 1.0e-154 551.2 634 50.9
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 5.1e-154 548.9 643 49.6
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 7.4e-153 545.0 655 47.2
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 2.1e-152 543.5 634 49.1
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 5.3e-151 538.9 630 47.0
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 1.2e-150 537.7 634 49.4
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 1.3e-149 534.3 641 49.0
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 1.7e-149 533.9 640 47.0
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 3.8e-149 532.7 623 48.2
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 3.2e-148 529.6 585 51.6
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 4.2e-148 529.3 627 47.5
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 3.7e-144 516.2 570 52.6
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 5.3e-143 512.3 643 46.3
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 1.7e-141 507.3 636 48.0
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 1.1e-140 504.6 622 48.4
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 4.6e-139 499.2 608 47.9
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 2.5e-137 493.4 669 44.8
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 1.1e-135 488.0 663 44.2
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 2.9e-133 479.9 469 56.7
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 8.7e-130 468.4 469 55.4
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 3.3e-129 466.5 620 47.3
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 7.4e-129 465.3 667 43.8
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 1.1e-124 451.4 417 60.9
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 1.7e-120 437.6 427 58.8
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 8.2e-120 435.3 612 44.1
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 3.8e-117 426.4 623 42.5
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 1.1e-116 424.9 504 47.8
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 1.4e-111 407.9 631 42.6
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 4.5e-110 402.9 407 53.8
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 5.0e-109 399.4 637 41.0
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 6.3e-104 382.5 347 60.8
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 4.4e-97 359.8 618 40.9
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 1.3e-96 358.2 619 40.5
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 1.1e-95 355.1 335 58.2
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 7.0e-95 352.4 618 40.5
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 1.7e-93 347.8 616 38.5
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 1.1e-92 345.1 631 37.6
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 5.5e-92 342.8 636 37.6
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 4.0e-90 336.7 620 38.7
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 3.4e-89 333.6 633 36.5
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 4.3e-84 316.6 387 46.8
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 1.1e-79 302.0 612 36.3
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 4.6e-78 296.6 400 45.0
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 4.6e-78 296.6 645 33.8
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 8.9e-74 282.3 619 34.7
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.8e-65 253.1 616 33.6
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 6.4e-64 249.6 623 33.5
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 1.1e-63 248.8 596 34.4
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.3e-60 237.3 617 32.1
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.7e-51 206.8 565 31.9
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 2.9e-48 197.6 337 40.7
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 2.4e-47 194.5 171 60.8
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 3.2e-47 194.1 543 31.5
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.3e-45 188.7 268 44.0
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 5.6e-44 183.3 651 26.7
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 1.1e-42 179.1 121 78.5
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 4.0e-42 177.2 188 54.8
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 2.5e-36 157.9 112 72.3
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 6.2e-35 153.3 113 68.1
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 2.0e-33 148.3 116 63.8
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 2.1e-30 138.3 151 49.7
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 2.8e-27 127.9 374 31.3
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 6.2e-27 126.7 142 51.4
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 1.1e-26 125.9 92 69.6
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 4.5e-25 120.6 346 27.7
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 5.8e-25 120.2 92 66.3
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 1.1e-23 115.9 162 44.4
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 1.4e-23 115.5 162 43.8
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 3.2e-23 114.4 71 71.8
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 2.7e-22 111.3 118 50.0
SalBow3G4229 Salvia bowleyana HOM05D001997 ORTHO05D004620 3.9e-21 107.5 134 50.7
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 1.5e-20 105.5 88 56.8
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 1.9e-20 105.1 84 57.1
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 1.6e-19 102.1 139 48.2
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 1.1e-18 99.4 88 54.5
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 1.7e-16 92.0 70 60.0
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 8.5e-16 89.7 84 52.4
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 2.5e-15 88.2 165 38.8
Actinidia11446 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.0e-13 82.8 203 33.0
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 1.3e-11 75.9 217 30.9
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 1.3e-11 75.9 217 30.9
TPR.G290 Trifolium pratense HOM05D001997 ORTHO05D004620 1.3e-11 75.9 49 69.4
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 2.2e-11 75.1 217 30.9
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 1.5e-09 68.9 80 46.2
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 1.3e-08 65.9 87 43.7
BcaC01g05247 Brassica carinata HOM05D001997 ORTHO05D004620 2.9e-08 64.7 71 54.9
BcaB01g03396 Brassica carinata HOM05D001623 ORTHO05D001473 6.5e-08 63.5 69 47.8
FAN10G4060 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.2e-07 61.2 60 50.0
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 1.2e-06 59.3 60 46.7
BcaC01g05246 Brassica carinata HOM05D001997 ORTHO05D004620 6.1e-06 57.0 86 38.4


User provided reference genes

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