Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0057831 Helianthus annuus HOM05D000071 ORTHO05D000029 3.1e-58 228.4 127 100.0
HanXRQChr02g0057651 Helianthus annuus HOM05D001705 ORTHO05D002725 7.9e-22 107.5 96 70.8
Lsat_1_v5_gn_6_42540 Lactuca sativa HOM05D000071 ORTHO05D000029 1.8e-21 106.3 125 56.8
QL09p041717 Quercus lobata HOM05D000071 ORTHO05D000029 1.3e-19 100.1 129 42.6
QL09p041755 Quercus lobata HOM05D000071 ORTHO05D000029 6.3e-19 97.8 130 41.5
HanXRQChr02g0057941 Helianthus annuus HOM05D000071 ORTHO05D000029 1.4e-18 96.7 111 59.5
Manes.18G087233 Manihot esculenta HOM05D000071 ORTHO05D000029 2.6e-17 92.4 122 37.7
HanXRQChr02g0054931 Helianthus annuus HOM05D000071 ORTHO05D000029 1.0e-16 90.5 113 45.1
ECA240G2525 Erigeron canadensis HOM05D003069 ORTHO05D002578 8.5e-16 87.4 116 50.9
Lsat_1_v5_gn_6_42241 Lactuca sativa HOM05D000071 ORTHO05D000029 7.2e-15 84.3 114 55.3
QL05p086723 Quercus lobata HOM05D000071 ORTHO05D000029 1.4e-13 80.1 119 35.3
CSS0025857 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 1.8e-13 79.7 122 45.1
Lj2g0025647 Lotus japonicus HOM05D000071 ORTHO05D000029 3.9e-13 78.6 129 41.1
Lalb_Chr02g0158661 Lupinus albus HOM05D000071 ORTHO05D000029 5.1e-13 78.2 128 40.6
Medtr0087s0070 Medicago truncatula HOM05D000071 ORTHO05D000029 6.7e-13 77.8 129 30.2
Dinv34741 Davidia involucrata HOM05D000071 ORTHO05D000029 1.1e-12 77.0 131 42.7
HanXRQChr02g0056851 Helianthus annuus HOM05D000071 ORTHO05D000029 1.1e-12 77.0 120 51.7
HanXRQChr04g0099041 Helianthus annuus HOM05D000071 ORTHO05D013220 1.1e-12 77.0 88 47.7
Medtr0087s0050 Medicago truncatula HOM05D000071 ORTHO05D000029 1.1e-12 77.0 128 28.9
CANSAT11G1634 Cannabis sativa HOM05D000071 ORTHO05D000029 1.5e-12 76.6 127 44.9
Duzib177G0440 Durio zibethinus HOM05D000071 ORTHO05D000029 1.5e-12 76.6 122 45.1
Lj1g0022948 Lotus japonicus HOM05D000071 ORTHO05D000029 1.5e-12 76.6 126 32.5
Lj2g0018296 Lotus japonicus HOM05D000071 ORTHO05D000029 1.9e-12 76.3 125 43.2
Lj2g0024572 Lotus japonicus HOM05D000071 ORTHO05D000029 1.9e-12 76.3 126 32.5
Solyc07g008630.1 Solanum lycopersicum HOM05D000071 ORTHO05D000029 2.5e-12 75.9 124 45.2
Nitab4.5_0010556g0030 Nicotiana tabacum HOM05D000071 ORTHO05D000029 3.3e-12 75.5 124 43.5
Lj1g0009087 Lotus japonicus HOM05D000071 ORTHO05D000029 5.7e-12 74.7 126 31.7
Lj1g0015052 Lotus japonicus HOM05D000071 ORTHO05D000029 5.7e-12 74.7 126 31.7
Medtr0017s0270 Medicago truncatula HOM05D000071 ORTHO05D000029 1.3e-11 73.6 124 33.9
Duzib112G0005 Durio zibethinus HOM05D000071 ORTHO05D000029 1.7e-11 73.2 124 33.9
Medtr6g016130 Medicago truncatula HOM05D000071 ORTHO05D000029 1.7e-11 73.2 129 29.5
MD01G1180500 Malus domestica HOM05D000071 ORTHO05D000029 2.2e-11 72.8 122 42.6
Nitab4.5_0000617g0250 Nicotiana tabacum HOM05D000071 ORTHO05D000029 2.2e-11 72.8 124 42.7
Potri.015G028600 Populus trichocarpa HOM05D000071 ORTHO05D000029 2.8e-11 72.4 122 29.5
GSVIVG01018463001 Vitis vinifera HOM05D000071 ORTHO05D000029 2.8e-11 72.4 131 34.4
Gohir.D11G308300 Gossypium hirsutum HOM05D000071 ORTHO05D000029 4.8e-11 71.6 122 36.1
Prupe.2G169200 Prunus persica HOM05D000071 ORTHO05D000029 4.8e-11 71.6 125 44.8
MD01G1212600 Malus domestica HOM05D000071 ORTHO05D000029 6.3e-11 71.2 122 36.1
Nitab4.5_0000617g0210 Nicotiana tabacum HOM05D000071 ORTHO05D000029 6.3e-11 71.2 126 43.7
Prupe.2G166300 Prunus persica HOM05D000071 ORTHO05D000029 8.2e-11 70.9 125 30.4
FAN25G1354 Fragaria x ananassa HOM05D000071 ORTHO05D000029 1.4e-10 70.1 124 44.4
Medtr6g016050 Medicago truncatula HOM05D000071 ORTHO05D000029 1.4e-10 70.1 128 28.1
Gorai.007G338400 Gossypium raimondii HOM05D000071 ORTHO05D000029 1.8e-10 69.7 127 34.6
CSS0020490 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 2.4e-10 69.3 124 31.5
Medtr6g016140 Medicago truncatula HOM05D000071 ORTHO05D000029 2.4e-10 69.3 128 28.1
Lj1g0017370 Lotus japonicus HOM05D000071 ORTHO05D000029 3.1e-10 68.9 128 32.0
Medtr6g016200 Medicago truncatula HOM05D000071 ORTHO05D000029 3.1e-10 68.9 129 29.5
HanXRQChr02g0057421 Helianthus annuus HOM05D000071 ORTHO05D000029 4.1e-10 68.6 57 84.2
MD01G1212300 Malus domestica HOM05D000071 ORTHO05D000029 4.1e-10 68.6 122 32.8
Prupe.1G575300 Prunus persica HOM05D000071 ORTHO05D000029 4.1e-10 68.6 119 31.1
MD01G1054100 Malus domestica HOM05D055451 ORTHO05D048610 5.3e-10 68.2 116 33.6
Medtr1g047190 Medicago truncatula HOM05D000071 ORTHO05D000029 5.3e-10 68.2 127 40.9
Lsat_1_v5_gn_6_44620 Lactuca sativa HOM05D000071 ORTHO05D000029 6.9e-10 67.8 111 50.5
MSTRG.6519 Avicennia marina HOM05D000071 ORTHO05D000029 9.1e-10 67.4 124 28.2
Lsat_1_v5_gn_2_39061 Lactuca sativa HOM05D000071 ORTHO05D000029 9.1e-10 67.4 117 48.7
Sopen07g004570 Solanum pennellii HOM05D000071 ORTHO05D000029 9.1e-10 67.4 128 40.6
TPR.G23423 Trifolium pratense HOM05D000071 ORTHO05D000029 9.1e-10 67.4 135 31.1
FAN02G3130 Fragaria x ananassa HOM05D000071 ORTHO05D000029 1.2e-09 67.0 122 32.0
Medtr6g038670 Medicago truncatula HOM05D000071 ORTHO05D000029 1.2e-09 67.0 121 34.7
Gorai.007G337100 Gossypium raimondii HOM05D000071 ORTHO05D000029 1.5e-09 66.6 124 30.6
CANSAT56G3135 Cannabis sativa HOM05D000071 ORTHO05D000029 2.0e-09 66.2 125 41.6
FAN01G1144 Fragaria x ananassa HOM05D000071 ORTHO05D000029 2.0e-09 66.2 134 30.6
Lsat_1_v5_gn_6_48780 Lactuca sativa HOM05D000071 ORTHO05D000029 2.0e-09 66.2 119 47.1
QL05p087294 Quercus lobata HOM05D000071 ORTHO05D000029 2.0e-09 66.2 127 30.7
QL09p011963 Quercus lobata HOM05D000071 ORTHO05D000029 2.0e-09 66.2 119 47.1
RcHm_v2.0_Chr1g0355861 Rosa chinensis HOM05D000071 ORTHO05D000029 2.6e-09 65.9 126 31.0
GSVIVG01028799001 Vitis vinifera HOM05D000071 ORTHO05D000029 2.6e-09 65.9 146 30.1
CSS0017287 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 3.4e-09 65.5 123 41.5
FAN06G2808 Fragaria x ananassa HOM05D000071 ORTHO05D000029 3.4e-09 65.5 131 36.6
FAN14G0510 Fragaria x ananassa HOM05D000071 ORTHO05D000029 3.4e-09 65.5 122 30.3
Lj1g0005655 Lotus japonicus HOM05D000071 ORTHO05D000029 3.4e-09 65.5 125 28.8
QL08p005662 Quercus lobata HOM05D000071 ORTHO05D000029 3.4e-09 65.5 110 43.6
Solyc07g008640.3 Solanum lycopersicum HOM05D000071 ORTHO05D000029 3.4e-09 65.5 128 40.6
FAN05G1261 Fragaria x ananassa HOM05D000071 ORTHO05D000029 4.5e-09 65.1 70 42.9
FAN10G1909 Fragaria x ananassa HOM05D000071 ORTHO05D000029 4.5e-09 65.1 131 36.6
Medtr6g016195 Medicago truncatula HOM05D000071 ORTHO05D000029 5.9e-09 64.7 130 37.7
Prupe.2G155500 Prunus persica HOM05D000071 ORTHO05D000029 5.9e-09 64.7 112 42.0
PGSC0003DMG400022977 Solanum tuberosum HOM05D000071 ORTHO05D000029 5.9e-09 64.7 126 42.9
DCAR_022189 Daucus carota HOM05D000071 ORTHO05D000029 7.7e-09 64.3 125 44.8
FvH4_7g14450 Fragaria vesca HOM05D000071 ORTHO05D000029 7.7e-09 64.3 130 36.9
Lsat_1_v5_gn_6_49060 Lactuca sativa HOM05D000071 ORTHO05D000029 7.7e-09 64.3 116 49.1
Haze_05212 Corylus avellana HOM05D000071 ORTHO05D000029 1.0e-08 63.9 69 63.8
Lsat_1_v5_gn_6_44800 Lactuca sativa HOM05D000071 ORTHO05D000029 1.0e-08 63.9 111 51.4
Gorai.007G339000 Gossypium raimondii HOM05D000071 ORTHO05D000029 1.7e-08 63.2 130 30.8
QL02p063193 Quercus lobata HOM05D000071 ORTHO05D000029 1.7e-08 63.2 120 40.8
FvH4_6g28530 Fragaria vesca HOM05D000071 ORTHO05D000029 2.2e-08 62.8 70 41.4
FvH4_6g53230 Fragaria vesca HOM05D000071 ORTHO05D000029 2.2e-08 62.8 47 61.7
Gohir.A10G136650 Gossypium hirsutum HOM05D000071 ORTHO05D000029 2.2e-08 62.8 124 29.8
CANSAT11G2381 Cannabis sativa HOM05D000071 ORTHO05D000029 2.9e-08 62.4 113 46.9
Cfa016335 Carpinus fangiana HOM05D000071 ORTHO05D000029 2.9e-08 62.4 129 41.1
Gohir.D11G308150 Gossypium hirsutum HOM05D000071 ORTHO05D000029 2.9e-08 62.4 125 30.4
ECA234G1461 Erigeron canadensis HOM05D000071 ORTHO05D000029 3.8e-08 62.0 120 50.0
HanXRQChr01g0022751 Helianthus annuus HOM05D000071 ORTHO05D000029 3.8e-08 62.0 71 40.8
HanXRQChr14g0448211 Helianthus annuus HOM05D000071 ORTHO05D000029 3.8e-08 62.0 96 38.5
Lsat_1_v5_gn_0_36620 Lactuca sativa HOM05D000071 ORTHO05D000029 3.8e-08 62.0 120 45.0
Nn3g18616 Nelumbo nucifera HOM05D000071 ORTHO05D000029 3.8e-08 62.0 110 45.5
RcHm_v2.0_Chr1g0348221 Rosa chinensis HOM05D000071 ORTHO05D000029 3.8e-08 62.0 104 33.7
MSTRG.14848 Avicennia marina HOM05D000071 ORTHO05D000029 5.0e-08 61.6 115 28.7
Nitab4.5_0000617g0280 Nicotiana tabacum HOM05D000071 ORTHO05D000029 5.0e-08 61.6 122 31.1
CSS0006363 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 6.5e-08 61.2 122 39.3
CSS0044448 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 6.5e-08 61.2 112 28.6
Lsat_1_v5_gn_6_51440 Lactuca sativa HOM05D000071 ORTHO05D000029 6.5e-08 61.2 119 46.2
PGR083G2557 Punica granatum HOM05D000071 ORTHO05D000029 6.5e-08 61.2 122 28.7
Lsat_1_v5_gn_6_45060 Lactuca sativa HOM05D000071 ORTHO05D000029 8.5e-08 60.8 111 47.7
Manes.04G014401 Manihot esculenta HOM05D000071 ORTHO05D000029 8.5e-08 60.8 122 45.9
Peaxi162Scf00089g00128 Petunia axillaris HOM05D000071 ORTHO05D000029 8.5e-08 60.8 125 36.8
CiPaw.05G228300 Carya illinoinensis HOM05D000071 ORTHO05D000029 1.1e-07 60.5 124 33.1
Duzib133G0880 Durio zibethinus HOM05D000071 ORTHO05D000029 1.1e-07 60.5 129 40.3
Lsat_1_v5_gn_6_48860 Lactuca sativa HOM05D000071 ORTHO05D000029 1.1e-07 60.5 128 43.8
MBI17_g33326_MAGBIO Magnolia biondii HOM05D000071 ORTHO05D000029 1.1e-07 60.5 124 40.3
Medtr5g085970 Medicago truncatula HOM05D000071 ORTHO05D000029 1.1e-07 60.5 123 32.5
CANSAT11G1286 Cannabis sativa HOM05D000071 ORTHO05D000029 1.4e-07 60.1 129 29.5
Ciclev10010225m.g Citrus clementina HOM05D000071 ORTHO05D000029 1.4e-07 60.1 125 39.2
FAN06G0057 Fragaria x ananassa HOM05D000071 ORTHO05D000029 1.4e-07 60.1 131 35.1
Lsat_1_v5_gn_6_51600 Lactuca sativa HOM05D000071 ORTHO05D000029 1.4e-07 60.1 128 43.8
CSS0041362 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 1.9e-07 59.7 128 25.8
CSS0041720 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 1.9e-07 59.7 112 29.5
Nitab4.5_0000023g0450 Nicotiana tabacum HOM05D000071 ORTHO05D000029 1.9e-07 59.7 119 38.7
ECA233G3767 Erigeron canadensis HOM05D000071 ORTHO05D000029 2.5e-07 59.3 68 47.1
Medtr0087s0030 Medicago truncatula HOM05D000071 ORTHO05D000029 2.5e-07 59.3 136 25.0
Medtr0087s0040 Medicago truncatula HOM05D000071 ORTHO05D000029 2.5e-07 59.3 136 25.0
Sed0025883 Sechium edule HOM05D000071 ORTHO05D000029 2.5e-07 59.3 123 41.5
HanXRQChr02g0057581 Helianthus annuus HOM05D000071 ORTHO05D000029 3.2e-07 58.9 112 47.3
RcHm_v2.0_Chr0c22g0500621 Rosa chinensis HOM05D000071 ORTHO05D000029 3.2e-07 58.9 73 41.1
RcHm_v2.0_Chr1g0315041 Rosa chinensis HOM05D000071 ORTHO05D000029 3.2e-07 58.9 71 53.5
Duzib114G0041 Durio zibethinus HOM05D000071 ORTHO05D000029 4.2e-07 58.5 137 27.7
Lsat_1_v5_gn_6_50141 Lactuca sativa HOM05D000071 ORTHO05D000029 4.2e-07 58.5 109 45.0
QL11p011787 Quercus lobata HOM05D000071 ORTHO05D000029 4.2e-07 58.5 48 60.4
RcHm_v2.0_Chr7g0207301 Rosa chinensis HOM05D000071 ORTHO05D000029 4.2e-07 58.5 124 29.0
GSVIVG01028817001 Vitis vinifera HOM05D000071 ORTHO05D000029 4.2e-07 58.5 125 30.4
Lsat_1_v5_gn_6_51420 Lactuca sativa HOM05D000071 ORTHO05D000029 5.5e-07 58.2 118 44.1
PGR044G1913 Punica granatum HOM05D000053 ORTHO05D000035 5.5e-07 58.2 73 58.9
ECA240G3411 Erigeron canadensis HOM05D000071 ORTHO05D000029 7.2e-07 57.8 128 41.4
Gohir.A07G088901 Gossypium hirsutum HOM05D000071 ORTHO05D000029 7.2e-07 57.8 142 35.9
Lsat_1_v5_gn_6_53901 Lactuca sativa HOM05D000071 ORTHO05D000029 7.2e-07 57.8 111 46.8
RcHm_v2.0_Chr7g0207201 Rosa chinensis HOM05D000071 ORTHO05D000029 7.2e-07 57.8 108 31.5
Cpa.g.sc701.4 Carica papaya HOM05D000071 ORTHO05D000029 9.4e-07 57.4 71 57.7
Haze_00086 Corylus avellana HOM05D000071 ORTHO05D000029 9.4e-07 57.4 71 42.3
Lsat_1_v5_gn_6_49480 Lactuca sativa HOM05D000071 ORTHO05D000029 9.4e-07 57.4 118 45.8
FvH4_7g14090 Fragaria vesca HOM05D000071 ORTHO05D000029 1.2e-06 57.0 100 33.0
Oeu038846.2 Olea europaea HOM05D000071 ORTHO05D000029 1.2e-06 57.0 126 31.7
CANSAT21G1199 Cannabis sativa HOM05D000071 ORTHO05D000029 1.6e-06 56.6 122 39.3
Cfa019643 Carpinus fangiana HOM05D000071 ORTHO05D000029 1.6e-06 56.6 120 41.7
FAN08G3589 Fragaria x ananassa HOM05D000071 ORTHO05D000029 1.6e-06 56.6 76 53.9
FAN25G0850 Fragaria x ananassa HOM05D000071 ORTHO05D000029 1.6e-06 56.6 104 46.2
Medtr0087s0020 Medicago truncatula HOM05D000071 ORTHO05D000029 1.6e-06 56.6 114 27.2
Prupe.4G122000 Prunus persica HOM05D000071 ORTHO05D000029 1.6e-06 56.6 122 30.3
RhsimUnG0134000 Rhododendron simsii HOM05D008944 ORTHO05D012715 1.6e-06 56.6 125 34.4
MD17G1013400 Malus domestica HOM05D000071 ORTHO05D000029 2.1e-06 56.2 124 44.4
RcHm_v2.0_Chr3g0472711 Rosa chinensis HOM05D000071 ORTHO05D000029 2.1e-06 56.2 110 31.8
CSS0007375 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 2.7e-06 55.8 124 41.1
CANSAT21G1502 Cannabis sativa HOM05D000071 ORTHO05D000029 2.7e-06 55.8 122 39.3
Cc11_g06850 Coffea canephora HOM05D000071 ORTHO05D000029 2.7e-06 55.8 88 36.4
Dinv24273 Davidia involucrata HOM05D000071 ORTHO05D000029 2.7e-06 55.8 79 39.2
Dinv34740 Davidia involucrata HOM05D000071 ORTHO05D000029 2.7e-06 55.8 132 37.1
Gorai.007G338800 Gossypium raimondii HOM05D000071 ORTHO05D000029 2.7e-06 55.8 124 30.6
Nitab4.5_0000350g0150 Nicotiana tabacum HOM05D000071 ORTHO05D000029 2.7e-06 55.8 70 38.6
QL03p053955 Quercus lobata HOM05D000071 ORTHO05D000029 2.7e-06 55.8 68 57.4
RcHm_v2.0_Chr7g0206911 Rosa chinensis HOM05D000071 ORTHO05D000029 2.7e-06 55.8 122 27.0
FvH4_5g20780 Fragaria vesca HOM05D000071 ORTHO05D000029 3.6e-06 55.5 110 44.5
Glyma.16G190500 Glycine max HOM05D000071 ORTHO05D000029 3.6e-06 55.5 71 53.5
HanXRQChr13g0387121 Helianthus annuus HOM05D000071 ORTHO05D000029 3.6e-06 55.5 123 43.9
HanXRQChr13g0387131 Helianthus annuus HOM05D000071 ORTHO05D000029 3.6e-06 55.5 123 43.9
Medtr3g031520 Medicago truncatula HOM05D000071 ORTHO05D000029 3.6e-06 55.5 127 38.6
QL09p011709 Quercus lobata HOM05D000071 ORTHO05D000029 3.6e-06 55.5 114 41.2
Duzib114G0642 Durio zibethinus HOM05D000071 ORTHO05D000029 4.7e-06 55.1 114 38.6
HanXRQChr02g0057521 Helianthus annuus HOM05D000071 ORTHO05D000029 4.7e-06 55.1 53 54.7
Lsat_1_v5_gn_6_45200 Lactuca sativa HOM05D000071 ORTHO05D000029 4.7e-06 55.1 113 44.2
Manes.10G136600 Manihot esculenta HOM05D000071 ORTHO05D000029 4.7e-06 55.1 122 29.5
QL04p093590 Quercus lobata HOM05D000071 ORTHO05D000029 4.7e-06 55.1 122 30.3
Sabra15G0021600 Salix brachista HOM05D000071 ORTHO05D011302 4.7e-06 55.1 66 45.5
Hma1.2p1_0685F.1_g203100 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 6.1e-06 54.7 122 29.5
MD01G1212500 Malus domestica HOM05D000071 ORTHO05D000029 6.1e-06 54.7 108 31.5
Oeu059691.1 Olea europaea HOM05D000071 ORTHO05D000029 6.1e-06 54.7 106 34.0
Duzib128G0917 Durio zibethinus HOM05D000071 ORTHO05D000029 7.9e-06 54.3 45 53.3
Duzib174G0003 Durio zibethinus HOM05D000071 ORTHO05D000029 7.9e-06 54.3 45 53.3
Hma1.2p1_0747F.1_g212480 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 7.9e-06 54.3 111 27.9
Lsat_1_v5_gn_6_43080 Lactuca sativa HOM05D000071 ORTHO05D000029 7.9e-06 54.3 111 46.8
PGR142G0727 Punica granatum HOM05D000053 ORTHO05D000035 7.9e-06 54.3 69 42.0
QL93p0310_0045 Quercus lobata HOM05D000071 ORTHO05D000029 7.9e-06 54.3 122 29.5


User provided reference genes

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