Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0057801 Helianthus annuus HOM05D007575 ORTHO05D009611 3.8e-308 1060.8 603 100.0
ECA233G3130 Erigeron canadensis HOM05D007575 ORTHO05D009611 5.2e-172 608.6 537 65.9
Lsat_1_v5_gn_6_54841 Lactuca sativa HOM05D007575 ORTHO05D009611 2.5e-150 536.6 530 59.8
CSS0031716 Camellia sinensis var. sinensis HOM05D007575 ORTHO05D009611 1.9e-110 404.1 581 45.6
QL10p045159 Quercus lobata HOM05D007575 ORTHO05D009611 1.3e-109 401.4 558 47.7
Actinidia39859 Actinidia chinensis HOM05D007575 ORTHO05D009611 8.1e-109 398.7 569 52.2
Cfa015783 Carpinus fangiana HOM05D007575 ORTHO05D009611 2.6e-107 393.7 551 47.4
ClCG08G004240 Citrullus lanatus HOM05D007575 ORTHO05D009611 1.0e-106 391.7 544 46.9
Gorai.011G145500 Gossypium raimondii HOM05D007575 ORTHO05D009611 3.8e-106 389.8 556 46.6
Sabra07G0100200 Salix brachista HOM05D007575 ORTHO05D009611 1.9e-105 387.5 552 47.6
MD04G1038600 Malus domestica HOM05D007575 ORTHO05D009611 2.5e-105 387.1 532 45.5
Rhsim09G0032600 Rhododendron simsii HOM05D007575 ORTHO05D009611 4.2e-105 386.3 556 46.8
GSVIVG01013567001 Vitis vinifera HOM05D007575 ORTHO05D009611 9.3e-105 385.2 553 46.8
Gohir.A10G134800 Gossypium hirsutum HOM05D007575 ORTHO05D009611 1.2e-104 384.8 546 48.0
Gohir.D10G131800 Gossypium hirsutum HOM05D007575 ORTHO05D009611 2.7e-104 383.6 549 46.3
Haze_00711 Corylus avellana HOM05D007575 ORTHO05D009611 3.5e-104 383.3 549 47.2
Prupe.1G189300 Prunus persica HOM05D007575 ORTHO05D009611 7.9e-104 382.1 557 44.3
CiPaw.01G103900 Carya illinoinensis HOM05D007575 ORTHO05D009611 1.1e-102 378.3 559 47.6
Potri.017G036600 Populus trichocarpa HOM05D007575 ORTHO05D009611 1.5e-102 377.9 548 46.4
MELO3C011621.2 Cucumis melo HOM05D007575 ORTHO05D009611 4.3e-102 376.3 542 45.6
Lj6A70T54 Lonicera japonica HOM05D007575 ORTHO05D009611 5.7e-102 375.9 647 42.7
CsaV3_6G003720 Cucumis sativus L. HOM05D007575 ORTHO05D009611 2.1e-101 374.0 542 44.5
Duzib151G0056 Durio zibethinus HOM05D007575 ORTHO05D009611 3.4e-99 366.7 551 44.5
CAN.G710.64 Capsicum annuum HOM05D007575 ORTHO05D009611 7.6e-99 365.5 535 44.9
Sed0001943 Sechium edule HOM05D007575 ORTHO05D009611 7.6e-99 365.5 544 44.3
Thecc.04G183800 Theobroma cacao HOM05D007575 ORTHO05D009611 1.0e-98 365.2 542 45.2
vmacro00586 Vaccinium macrocarpon HOM05D007575 ORTHO05D009611 1.3e-98 364.8 594 47.6
MSTRG.24588 Avicennia marina HOM05D007575 ORTHO05D009611 2.9e-98 363.6 526 44.7
Migut.N00470 Erythranthe guttata HOM05D007575 ORTHO05D009611 6.5e-98 362.5 538 45.4
Ciclev10019508m.g Citrus clementina HOM05D007575 ORTHO05D009611 1.1e-97 361.7 573 48.3
Manes.11G115700 Manihot esculenta HOM05D007575 ORTHO05D009611 1.9e-97 360.9 547 42.4
Cc03_g13380 Coffea canephora HOM05D007575 ORTHO05D009611 1.2e-96 358.2 542 44.6
Oeu050351.1 Olea europaea HOM05D007575 ORTHO05D009611 4.6e-96 356.3 527 45.4
Sp4g25330 Schrenkiella parvula HOM05D007575 ORTHO05D009611 7.9e-96 355.5 541 44.0
CANSAT78G0404 Cannabis sativa HOM05D007575 ORTHO05D009611 1.3e-95 354.8 539 41.6
Aa31LG1G25020 Aethionema arabicum HOM05D007575 ORTHO05D009611 1.8e-95 354.4 538 44.2
RcHm_v2.0_Chr4g0407361 Rosa chinensis HOM05D007575 ORTHO05D009611 1.8e-95 354.4 600 45.2
AL4G41870 Arabidopsis lyrata HOM05D007575 ORTHO05D009611 2.3e-95 354.0 548 43.1
TAR633G2419 Trochodendron aralioides HOM05D007575 ORTHO05D009611 6.7e-95 352.4 539 44.5
FAN17G1632 Fragaria x ananassa HOM05D007575 ORTHO05D009611 2.5e-94 350.5 599 40.7
DCAR_027534 Daucus carota HOM05D007575 ORTHO05D009611 4.3e-94 349.7 534 43.6
Gohir.A05G326900 Gossypium hirsutum HOM05D007575 ORTHO05D009611 4.3e-94 349.7 537 43.6
Eucgr.A00245 Eucalyptus grandis HOM05D007575 ORTHO05D009611 2.2e-93 347.4 543 42.0
Thhalv10001393m.g Eutrema salsugineum HOM05D007575 ORTHO05D009611 4.8e-93 346.3 544 43.9
Gorai.009G350900 Gossypium raimondii HOM05D007575 ORTHO05D009611 6.3e-93 345.9 537 45.1
PGR083G2249 Punica granatum HOM05D007575 ORTHO05D009611 1.4e-92 344.7 528 43.4
Actinidia11312 Actinidia chinensis HOM05D007575 ORTHO05D009611 4.1e-92 343.2 549 44.4
Gohir.D05G326300 Gossypium hirsutum HOM05D007575 ORTHO05D009611 4.1e-92 343.2 537 44.9
SalBow6G5467 Salvia bowleyana HOM05D007575 ORTHO05D009611 5.3e-92 342.8 531 42.2
AT2G43210 Arabidopsis thaliana HOM05D007575 ORTHO05D009611 2.6e-91 340.5 538 42.6
Carub.0004s2568 Capsella rubella HOM05D007575 ORTHO05D009611 4.5e-91 339.7 536 43.8
FAN07G0850 Fragaria x ananassa HOM05D007575 ORTHO05D009611 4.5e-91 339.7 599 42.7
FvH4_4g11270 Fragaria vesca HOM05D007575 ORTHO05D009611 2.9e-90 337.0 599 42.9
THA.LOC104803562 Tarenaya hassleriana HOM05D007575 ORTHO05D009611 8.5e-90 335.5 546 41.6
Potri.007G123800 Populus trichocarpa HOM05D007575 ORTHO05D009611 7.2e-89 332.4 475 46.3
Sopen09g036470 Solanum pennellii HOM05D007575 ORTHO05D009611 7.2e-89 332.4 530 42.8
SGA_v2.0_scaffold406G51053 Striga asiatica HOM05D007575 ORTHO05D009611 7.2e-89 332.4 536 42.2
Peaxi162Scf00286g00233 Petunia axillaris HOM05D007575 ORTHO05D009611 1.5e-86 324.7 550 42.0
Nn1g09745 Nelumbo nucifera HOM05D007575 ORTHO05D009611 5.7e-86 322.8 575 39.1
Sabra17G0024000 Salix brachista HOM05D007575 ORTHO05D009611 1.2e-83 315.1 591 40.3
BraA04t18714Z Brassica rapa HOM05D001811 ORTHO05D001738 1.5e-83 314.7 533 41.8
Atru.chr3.1619 Acer truncatum HOM05D007575 ORTHO05D009611 2.6e-83 313.9 503 43.7
C04p70190 Brassica napus HOM05D007575 ORTHO05D009611 5.0e-82 309.7 547 40.8
FAN22G0659 Fragaria x ananassa HOM05D007575 ORTHO05D009611 7.2e-81 305.8 612 39.7
A04p32490 Brassica napus HOM05D007575 ORTHO05D009611 1.8e-79 301.2 564 39.5
Lj6A61T39 Lonicera japonica HOM05D007575 ORTHO05D009611 8.8e-79 298.9 370 51.6
MBI08_g10298_MAGBIO Magnolia biondii HOM05D007575 ORTHO05D009611 5.3e-76 289.7 607 36.4
CDE09G0236 Ceratophyllum demersum HOM05D007575 ORTHO05D009611 2.2e-74 284.3 529 36.3
unitig_8.g3630 Utricularia gibba HOM05D007575 ORTHO05D009611 1.5e-73 281.6 554 38.3
Nitab4.5_0001049g0060 Nicotiana tabacum HOM05D007575 ORTHO05D009611 7.2e-73 279.3 459 43.8
HPP92_002813 Vanilla planifolia HOM05D007575 ORTHO05D009611 4.7e-72 276.6 529 38.0
Nitab4.5_0004962g0010 Nicotiana tabacum HOM05D007575 ORTHO05D009611 6.1e-72 276.2 461 43.8
ATR0743G244 Amborella trichopoda HOM05D007575 ORTHO05D009611 3.7e-69 266.9 546 33.3
HPP92_002869 Vanilla planifolia HOM05D007575 ORTHO05D009611 5.3e-68 263.1 498 38.0
Os11g0293900 Oryza sativa ssp. japonica HOM05D007575 ORTHO05D009611 2.1e-64 251.1 546 34.2
PSO210G6745 Papaver somniferum HOM05D007575 ORTHO05D009611 3.4e-62 243.8 555 39.3
Solyc09g098550.4 Solanum lycopersicum HOM05D007575 ORTHO05D009611 9.8e-62 242.3 452 39.8
BcaNung07370 Brassica carinata HOM05D007575 ORTHO05D009611 9.1e-60 235.7 444 39.6
COL.COLO4_24385 Corchorus olitorius HOM05D001792 ORTHO05D001821 2.9e-58 230.7 544 35.8
CARHR138270 Cardamine hirsuta HOM05D007575 ORTHO05D009611 3.8e-58 230.3 459 37.7
PSO832G0541 Papaver somniferum HOM05D007575 ORTHO05D009611 9.8e-54 215.7 468 33.5
Lsat_1_v5_gn_5_138981 Lactuca sativa HOM05D007575 ORTHO05D009611 3.3e-49 200.7 330 45.2
Hma1.2p1_1477F.1_g285910 Hydrangea macrophylla HOM05D007575 ORTHO05D009611 4.9e-37 160.2 415 36.6
Mapoly0164s0007 Marchantia polymorpha HOM05D007575 ORTHO05D009611 2.4e-36 157.9 472 29.0
Pp3c20_2320 Physcomitrium patens HOM05D007575 ORTHO05D009611 3.0e-34 151.0 530 26.6
SEGI_13760 Sequoiadendron giganteum HOM05D007575 ORTHO05D009611 5.0e-34 150.2 398 31.4
BcaB06g29288 Brassica carinata HOM05D007575 ORTHO05D009611 3.1e-31 141.0 128 52.3
CSS0007449 Camellia sinensis var. sinensis HOM05D007575 ORTHO05D009611 5.4e-28 130.2 346 33.8
Zm00001eb198990 Zea mays HOM05D007575 ORTHO05D009611 1.0e-26 125.9 225 39.1
AagrBONN_evm.TU.Sc2ySwM_344.3290 Anthoceros agrestis HOM05D007575 ORTHO05D009611 6.6e-26 123.2 418 30.1
Eucgr.A00051 Eucalyptus grandis HOM05D007575 ORTHO05D009611 1.1e-23 115.9 170 42.9
SMO116G0403 Selaginella moellendorffii HOM05D007575 ORTHO05D009611 3.4e-22 110.9 542 24.7
TAR633G1182 Trochodendron aralioides HOM05D007575 ORTHO05D009611 6.0e-19 100.1 180 41.1
PGSC0003DMG400021612 Solanum tuberosum HOM05D007575 ORTHO05D009611 1.7e-18 98.6 76 65.8
SalBow5G2148 Salvia bowleyana HOM05D007575 ORTHO05D009611 3.3e-17 94.4 174 37.9
SalBow5G4021 Salvia bowleyana HOM05D007575 ORTHO05D009611 3.3e-17 94.4 174 37.9
SEGI_03248 Sequoiadendron giganteum HOM05D007575 ORTHO05D009611 1.4e-15 89.0 169 38.5
CBR_g123 Chara braunii HOM05D007575 ORTHO05D009611 3.5e-11 74.3 321 25.9
Gohir.D12G228000 Gossypium hirsutum HOM05D002884 ORTHO05D003178 2.6e-06 58.2 86 31.4
Gorai.008G244000 Gossypium raimondii HOM05D002884 ORTHO05D003178 2.6e-06 58.2 86 31.4
Sc22g0000260 Simmondsia chinensis HOM05D002884 ORTHO05D003178 2.6e-06 58.2 87 33.3
Gohir.A12G225400 Gossypium hirsutum HOM05D002884 ORTHO05D003178 3.4e-06 57.8 86 31.4
MBI04_g00304_MAGBIO Magnolia biondii HOM05D002884 ORTHO05D003178 3.4e-06 57.8 93 32.3
Cfa012110 Carpinus fangiana HOM05D002884 ORTHO05D003178 4.5e-06 57.4 86 32.6
MBI08_g05086_MAGBIO Magnolia biondii HOM05D007575 ORTHO05D009611 4.5e-06 57.4 55 56.4
MSTRG.12015 Avicennia marina HOM05D002884 ORTHO05D003178 5.8e-06 57.0 86 31.4
Ciclev10019482m.g Citrus clementina HOM05D002884 ORTHO05D003178 5.8e-06 57.0 86 31.4
Cc08_g14060 Coffea canephora HOM05D002884 ORTHO05D003178 5.8e-06 57.0 86 31.4
SalBow6G0746 Salvia bowleyana HOM05D002884 ORTHO05D003178 5.8e-06 57.0 86 31.4
Gohir.A09G193001 Gossypium hirsutum HOM05D002884 ORTHO05D003178 7.6e-06 56.6 86 31.4
QL12p017410 Quercus lobata HOM05D002884 ORTHO05D003178 7.6e-06 56.6 86 31.4
VMungo1215G1054 Vigna mungo HOM05D002884 ORTHO05D003178 7.6e-06 56.6 86 30.2
HPP92_022610 Vanilla planifolia HOM05D002884 ORTHO05D003178 9.9e-06 56.2 86 32.6


User provided reference genes

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