Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 4.2e-174 614.8 348 100.0
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 2.6e-131 472.6 277 94.9
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 4.4e-131 471.9 277 94.6
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 2.3e-124 449.5 277 89.2
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 4.0e-124 448.7 277 89.9
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 2.6e-123 446.0 277 88.4
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 2.6e-123 446.0 277 89.2
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 2.6e-123 446.0 277 89.2
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 3.4e-123 445.7 277 89.2
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 4.4e-123 445.3 277 87.7
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 7.5e-123 444.5 277 87.7
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 9.8e-123 444.1 277 87.0
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 1.3e-122 443.7 277 89.2
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.3e-122 443.7 277 88.1
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.3e-122 443.7 277 88.4
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 2.8e-122 442.6 277 87.7
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.8e-122 442.6 277 87.7
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 3.7e-122 442.2 277 88.1
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 6.3e-122 441.4 277 87.7
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 6.3e-122 441.4 277 88.1
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 6.3e-122 441.4 277 87.7
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 8.3e-122 441.0 277 86.6
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 1.4e-121 440.3 277 87.4
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 3.1e-121 439.1 277 87.0
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 3.1e-121 439.1 277 87.0
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 4.1e-121 438.7 277 87.7
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 5.4e-121 438.3 277 86.6
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 5.4e-121 438.3 277 87.0
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 7.0e-121 438.0 277 87.0
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 7.0e-121 438.0 277 85.9
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 7.0e-121 438.0 277 86.6
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 7.0e-121 438.0 277 87.0
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 9.1e-121 437.6 277 87.0
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 9.1e-121 437.6 276 87.7
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 1.2e-120 437.2 277 85.9
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 1.6e-120 436.8 277 86.3
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 2.0e-120 436.4 277 85.9
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 3.5e-120 435.6 277 87.0
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 4.5e-120 435.3 277 86.3
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 5.9e-120 434.9 277 86.3
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 7.7e-120 434.5 277 87.0
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.0e-119 434.1 279 84.6
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 1.3e-119 433.7 277 85.9
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 1.3e-119 433.7 277 86.3
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 1.7e-119 433.3 277 85.9
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 2.2e-119 433.0 277 85.2
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 2.2e-119 433.0 277 86.3
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 2.9e-119 432.6 276 86.6
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 3.8e-119 432.2 278 85.3
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 3.8e-119 432.2 283 85.5
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 1.5e-118 430.3 277 86.3
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 1.5e-118 430.3 277 85.2
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 3.2e-118 429.1 275 84.0
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 4.2e-118 428.7 277 83.8
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 4.2e-118 428.7 277 84.1
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 1.2e-117 427.2 275 83.6
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 1.6e-117 426.8 277 86.3
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 2.1e-117 426.4 277 85.9
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 2.7e-117 426.0 277 83.0
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 2.7e-117 426.0 277 84.8
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 3.6e-117 425.6 277 83.0
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 3.6e-117 425.6 277 85.9
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 8.0e-117 424.5 277 84.8
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 2.3e-116 422.9 277 82.3
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 5.2e-116 421.8 276 83.0
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 5.2e-116 421.8 276 83.0
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 8.8e-116 421.0 261 89.3
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 8.8e-116 421.0 321 75.4
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 8.8e-116 421.0 277 85.9
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 4.4e-115 418.7 277 81.6
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 5.7e-115 418.3 301 78.7
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 9.8e-115 417.5 277 85.2
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 6.3e-114 414.8 261 87.7
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 8.3e-114 414.5 271 84.1
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 8.3e-114 414.5 261 87.7
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 1.4e-113 413.7 278 82.7
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 7.0e-113 411.4 277 83.0
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.6e-112 410.2 320 74.1
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 2.0e-112 409.8 321 72.3
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 3.5e-112 409.1 280 82.9
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 8.6e-111 404.4 277 77.3
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 1.1e-110 404.1 274 83.6
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 3.3e-110 402.5 270 85.2
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 9.5e-110 401.0 277 80.1
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 3.6e-109 399.1 277 80.1
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 1.0e-108 397.5 307 73.3
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 1.4e-108 397.1 317 69.7
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 1.4e-108 397.1 277 79.4
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 4.0e-108 395.6 275 79.3
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 4.0e-108 395.6 296 74.0
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 3.4e-107 392.5 255 86.7
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 5.7e-107 391.7 278 78.8
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 4.9e-106 388.7 275 73.8
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 4.9e-106 388.7 278 77.3
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 1.8e-105 386.7 264 82.2
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 3.2e-105 386.0 269 76.6
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 4.1e-105 385.6 254 82.7
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 5.9e-104 381.7 308 72.7
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 8.6e-103 377.9 260 80.8
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 8.6e-103 377.9 353 60.9
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 8.6e-103 377.9 277 76.5
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 2.5e-102 376.3 272 78.3
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 9.5e-102 374.4 262 79.0
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 4.7e-101 372.1 271 78.2
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 6.8e-100 368.2 331 68.0
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 1.9e-97 360.1 230 84.8
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 2.4e-97 359.8 230 86.5
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 7.8e-96 354.8 222 90.1
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 3.4e-91 339.3 276 65.6
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 9.8e-91 337.8 250 77.2
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 9.8e-91 337.8 250 77.2
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 2.9e-90 336.3 222 84.7
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 3.7e-90 335.9 267 71.2
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 7.8e-88 328.2 277 66.1
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 1.7e-87 327.0 281 66.9
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 3.0e-87 326.2 224 82.6
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.5e-86 323.9 313 64.2
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 7.3e-86 321.6 284 67.6
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 6.2e-85 318.5 274 63.9
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 1.4e-81 307.4 274 66.4
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.6e-80 303.9 274 66.1
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 5.1e-79 298.9 258 65.9
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 9.0e-68 261.5 187 77.5
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 1.4e-65 254.2 278 54.7
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 1.4e-65 254.2 274 53.6
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 6.9e-60 235.3 156 76.9
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 2.2e-58 230.3 181 77.9
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 4.6e-56 222.6 145 86.2
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 2.3e-55 220.3 138 83.3
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 2.1e-53 213.8 129 84.5
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 3.4e-51 206.5 132 81.1
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 9.3e-49 198.4 300 46.0
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 7.6e-43 178.7 106 85.8
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 1.1e-41 174.9 97 90.7
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 5.5e-41 172.6 90 96.7
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 1.7e-34 151.0 84 89.3
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 4.6e-32 142.9 151 58.9
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.7e-29 134.4 74 90.5
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.7e-29 134.4 74 90.5
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 3.7e-29 133.3 80 81.2
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 6.3e-29 132.5 80 81.2
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 1.4e-23 114.8 264 36.7
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 1.2e-19 101.7 384 30.2
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 2.6e-19 100.5 149 48.3
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.2e-18 97.4 71 87.3
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 3.8e-18 96.7 104 56.7
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 8.5e-18 95.5 147 40.1
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 1.9e-17 94.4 156 39.1
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 3.2e-17 93.6 157 42.0
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 4.2e-17 93.2 57 78.9
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 7.2e-17 92.4 71 80.3
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 8.0e-16 89.0 158 39.2
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 1.4e-15 88.2 73 71.2
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 8.8e-15 85.5 155 37.4
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 7.5e-14 82.4 46 89.1
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 3.7e-13 80.1 46 80.4
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 4.1e-12 76.6 46 82.6
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 3.5e-11 73.6 157 38.9
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 5.9e-11 72.8 43 81.4
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.7e-10 71.2 162 34.6
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 1.7e-10 71.2 269 30.9
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 9.4e-09 65.5 140 42.1
TAR636G1592 Trochodendron aralioides HOM05D004381 ORTHO05D415991 5.7e-06 56.2 38 71.1


User provided reference genes

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