Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 3.3e-121 438.3 213 100.0
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 8.4e-93 344.0 211 79.6
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 2.8e-88 328.9 207 75.8
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.4e-79 300.1 210 69.0
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 1.1e-76 290.4 209 67.5
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 4.2e-76 288.5 214 68.7
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 6.1e-75 284.6 222 66.2
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 3.3e-73 278.9 218 63.3
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 4.3e-73 278.5 219 63.5
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 9.7e-73 277.3 219 62.1
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 1.3e-72 276.9 223 62.8
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 1.3e-72 276.9 226 62.4
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 2.8e-72 275.8 225 60.4
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 1.4e-71 273.5 223 60.5
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 3.1e-71 272.3 229 60.7
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 4.1e-71 271.9 225 61.8
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 6.9e-71 271.2 222 61.7
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 9.0e-71 270.8 215 61.9
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.2e-70 270.4 222 61.7
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 2.0e-70 269.6 229 60.7
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 3.4e-70 268.9 222 61.3
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 3.4e-70 268.9 226 60.6
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 3.4e-70 268.9 224 60.3
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 5.9e-70 268.1 231 60.2
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 7.7e-70 267.7 218 62.4
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 1.3e-69 266.9 228 62.3
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.3e-69 266.9 222 60.8
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 1.7e-69 266.5 221 59.7
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 1.7e-69 266.5 218 61.9
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 2.9e-69 265.8 215 62.3
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 5.0e-69 265.0 219 61.2
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 8.5e-69 264.2 222 60.4
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.9e-68 263.1 225 58.7
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 1.9e-68 263.1 217 63.6
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 3.2e-68 262.3 217 59.9
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 7.2e-68 261.2 224 58.9
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 7.2e-68 261.2 224 58.9
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.2e-67 260.4 223 57.4
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 1.6e-67 260.0 228 60.1
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.7e-67 259.2 224 58.5
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 4.6e-67 258.5 216 60.2
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 6.1e-67 258.1 214 60.3
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 1.0e-66 257.3 232 58.2
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.4e-66 256.9 229 59.8
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 3.9e-66 255.4 228 57.5
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 6.7e-66 254.6 219 57.5
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 6.7e-66 254.6 218 58.3
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 1.1e-65 253.8 218 60.6
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 1.1e-65 253.8 223 58.3
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 1.1e-65 253.8 218 59.6
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 1.5e-65 253.4 214 60.3
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 2.0e-65 253.1 221 56.6
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 9.7e-65 250.8 220 59.1
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 1.7e-64 250.0 222 57.2
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 3.7e-64 248.8 217 59.4
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 3.7e-64 248.8 212 60.8
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 4.8e-64 248.4 227 55.9
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 4.8e-64 248.4 218 57.3
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 6.3e-64 248.1 227 57.3
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 1.1e-63 247.3 219 55.3
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 1.1e-63 247.3 222 57.7
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 1.4e-63 246.9 225 55.1
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 1.8e-63 246.5 220 58.2
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 4.1e-63 245.4 210 57.6
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 9.1e-63 244.2 223 55.2
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 9.1e-63 244.2 219 57.1
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 1.2e-62 243.8 228 58.3
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 1.2e-62 243.8 220 58.6
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.5e-62 243.4 232 53.4
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 7.7e-62 241.1 215 55.8
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 7.7e-62 241.1 215 57.2
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.0e-61 240.7 223 57.0
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 1.7e-61 240.0 221 55.7
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 2.9e-61 239.2 211 57.3
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 5.0e-61 238.4 210 57.6
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 5.0e-61 238.4 216 58.3
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 5.0e-61 238.4 216 58.3
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 6.5e-61 238.0 210 57.1
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 8.5e-61 237.7 216 58.3
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 1.1e-60 237.3 220 57.3
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 1.4e-60 236.9 210 57.1
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 1.4e-60 236.9 210 57.1
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 1.9e-60 236.5 212 56.1
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 4.2e-60 235.3 211 58.3
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 4.2e-60 235.3 211 55.5
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 9.4e-60 234.2 212 58.0
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 9.4e-60 234.2 211 56.4
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 9.4e-60 234.2 210 55.2
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 1.2e-59 233.8 212 57.1
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 1.6e-59 233.4 211 58.3
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 1.6e-59 233.4 220 54.1
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 2.1e-59 233.0 218 56.4
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 4.7e-59 231.9 220 55.5
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 7.9e-59 231.1 218 55.0
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 1.4e-58 230.3 212 56.1
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.8e-58 229.9 218 54.6
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 3.0e-58 229.2 216 56.0
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 3.0e-58 229.2 206 56.8
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 5.1e-58 228.4 224 53.6
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 5.1e-58 228.4 216 55.1
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 6.7e-58 228.0 215 56.3
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 6.7e-58 228.0 216 54.6
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 1.1e-57 227.3 210 56.7
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 1.5e-57 226.9 219 54.8
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 1.5e-57 226.9 215 56.7
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 1.5e-57 226.9 213 54.0
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 3.3e-57 225.7 216 55.1
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 5.7e-57 224.9 229 52.0
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 7.4e-57 224.6 217 53.0
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 9.7e-57 224.2 210 57.1
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 1.3e-56 223.8 221 54.3
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 1.7e-56 223.4 212 56.6
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 8.2e-56 221.1 207 55.1
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 8.2e-56 221.1 207 55.1
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 1.1e-55 220.7 246 50.8
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 4.1e-55 218.8 208 55.3
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 5.3e-55 218.4 226 54.0
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 9.1e-55 217.6 216 56.9
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 1.2e-54 217.2 220 52.7
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 1.2e-54 217.2 229 52.8
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 4.5e-54 215.3 194 56.7
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 1.7e-53 213.4 237 51.1
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 2.2e-53 213.0 135 71.1
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 5.0e-53 211.8 208 52.4
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 5.0e-53 211.8 140 69.3
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 8.5e-53 211.1 209 53.6
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.5e-52 210.3 188 56.9
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 1.6e-51 206.8 218 52.3
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 3.6e-51 205.7 209 52.6
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 6.1e-51 204.9 215 50.2
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.0e-50 204.1 243 45.7
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 1.4e-50 203.8 144 65.3
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 1.4e-50 203.8 134 70.1
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 1.1e-49 200.7 192 54.2
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 1.5e-49 200.3 223 48.0
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 3.3e-49 199.1 214 48.6
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 5.7e-49 198.4 134 67.2
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 9.7e-49 197.6 219 51.1
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.7e-48 196.8 182 54.4
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 2.2e-48 196.4 224 48.7
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 3.7e-48 195.7 225 49.3
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 7.0e-47 191.4 206 48.5
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 3.5e-46 189.1 204 51.0
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.9e-45 186.0 216 47.7
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 3.8e-45 185.7 211 48.8
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 3.8e-45 185.7 216 45.8
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.1e-44 184.1 214 45.8
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 1.1e-44 184.1 155 56.1
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.1e-44 184.1 214 47.2
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 2.5e-44 183.0 217 46.1
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 3.2e-44 182.6 205 46.3
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 3.2e-44 182.6 216 44.9
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 2.7e-43 179.5 179 54.7
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 4.7e-43 178.7 129 59.7
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 1.4e-42 177.2 132 58.3
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 1.8e-42 176.8 225 44.0
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 4.0e-42 175.6 216 44.4
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 4.4e-41 172.2 128 60.9
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 5.7e-41 171.8 223 47.5
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 6.3e-40 168.3 123 62.6
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 3.1e-39 166.0 222 42.8
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 7.0e-39 164.9 220 46.8
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 7.7e-38 161.4 132 57.6
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 7.2e-36 154.8 203 44.8
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 9.4e-36 154.5 263 39.5
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 2.1e-35 153.3 154 53.2
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 2.7e-35 152.9 106 63.2
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 8.0e-35 151.4 118 58.5
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 8.0e-35 151.4 123 57.7
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 5.2e-34 148.7 220 43.2
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 1.5e-33 147.1 217 41.9
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 1.5e-33 147.1 217 41.9
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 1.1e-31 141.0 210 42.4
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 2.3e-29 133.3 76 77.6
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 7.5e-25 118.2 85 67.1
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 3.3e-20 102.8 59 76.3
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 1.7e-16 90.5 50 76.0
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 4.1e-15 85.9 52 73.1
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 3.9e-13 79.3 111 43.2


User provided reference genes

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