Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0056061 Helianthus annuus HOM05D003668 ORTHO05D221127 2.2e-79 298.9 152 100.0
HanXRQChr15g0488541 Helianthus annuus HOM05D003668 ORTHO05D004242 2.4e-25 119.4 120 60.8
HanXRQChr15g0477351 Helianthus annuus HOM05D003668 ORTHO05D004242 2.0e-19 99.8 145 45.5
Lalb_Chr02g0145561 Lupinus albus HOM05D003668 ORTHO05D004242 9.8e-19 97.4 120 50.8
CsaV3_5G034880 Cucumis sativus L. HOM05D003668 ORTHO05D004242 2.2e-18 96.3 164 41.5
ECA246G0677 Erigeron canadensis HOM05D003668 ORTHO05D004242 2.8e-18 95.9 145 44.8
FvH4_4g32120 Fragaria vesca HOM05D003668 ORTHO05D004242 6.3e-18 94.7 131 45.8
FAN07G1823 Fragaria x ananassa HOM05D003668 ORTHO05D004242 6.3e-18 94.7 131 45.8
FAN12G3685 Fragaria x ananassa HOM05D003668 ORTHO05D004242 6.3e-18 94.7 131 45.8
FAN22G1857 Fragaria x ananassa HOM05D003668 ORTHO05D004242 6.3e-18 94.7 131 45.8
Lalb_Chr06g0165651 Lupinus albus HOM05D003668 ORTHO05D004242 8.3e-18 94.4 120 48.3
Actinidia14944 Actinidia chinensis HOM05D003668 ORTHO05D004242 1.4e-17 93.6 168 37.5
Lsat_1_v5_gn_3_54180 Lactuca sativa HOM05D003668 ORTHO05D004242 1.4e-17 93.6 140 46.4
Ca_11103_v3 Cicer arietinum L. HOM05D003668 ORTHO05D004242 1.8e-17 93.2 129 45.7
Lj6C749G7 Lonicera japonica HOM05D003668 ORTHO05D004242 1.8e-17 93.2 132 47.0
Nitab4.5_0004692g0030 Nicotiana tabacum HOM05D003668 ORTHO05D004242 4.1e-17 92.0 131 45.8
RcHm_v2.0_Chr4g0440821 Rosa chinensis HOM05D003668 ORTHO05D004242 4.1e-17 92.0 131 43.5
Potri.008G127300 Populus trichocarpa HOM05D003668 ORTHO05D004242 5.4e-17 91.7 133 44.4
CSS0003505 Camellia sinensis var. sinensis HOM05D003668 ORTHO05D004242 7.0e-17 91.3 167 38.9
CSS0008273 Camellia sinensis var. sinensis HOM05D003668 ORTHO05D004242 7.0e-17 91.3 167 38.9
MELO3C012298.2 Cucumis melo HOM05D003668 ORTHO05D004242 7.0e-17 91.3 164 40.2
Sc11g0004080 Simmondsia chinensis HOM05D003668 ORTHO05D004242 7.0e-17 91.3 127 47.2
arahy.Tifrunner.gnm1.ann1.V9FAYY Arachis hypogaea HOM05D003668 ORTHO05D004242 9.2e-17 90.9 137 43.8
CiPaw.06G013800 Carya illinoinensis HOM05D003668 ORTHO05D004242 9.2e-17 90.9 128 43.8
Gohir.A03G123600 Gossypium hirsutum HOM05D003668 ORTHO05D004242 9.2e-17 90.9 129 47.3
Gohir.D02G146200 Gossypium hirsutum HOM05D003668 ORTHO05D004242 9.2e-17 90.9 129 47.3
Sed0001529 Sechium edule HOM05D003668 ORTHO05D004242 9.2e-17 90.9 170 38.2
Sed0014721 Sechium edule HOM05D003668 ORTHO05D004242 9.2e-17 90.9 170 38.2
VMungo0720G2186 Vigna mungo HOM05D003668 ORTHO05D004242 9.2e-17 90.9 124 46.0
CSS0021848 Camellia sinensis var. sinensis HOM05D003668 ORTHO05D004242 1.2e-16 90.5 124 45.2
Migut.E00406 Erythranthe guttata HOM05D003668 ORTHO05D004242 1.6e-16 90.1 122 47.5
Medtr1g108590 Medicago truncatula HOM05D003668 ORTHO05D004242 1.6e-16 90.1 163 37.4
PGR102G1044 Punica granatum HOM05D003668 ORTHO05D004242 1.6e-16 90.1 129 45.0
TPR.G4938 Trifolium pratense HOM05D003668 ORTHO05D004242 1.6e-16 90.1 129 45.0
arahy.Tifrunner.gnm1.ann1.P86RCB Arachis hypogaea HOM05D003668 ORTHO05D004242 2.0e-16 89.7 137 43.1
EL10Ac6g14242 Beta vulgaris HOM05D003668 ORTHO05D004242 2.0e-16 89.7 127 42.5
Lj5g0008039 Lotus japonicus HOM05D003668 ORTHO05D004242 2.0e-16 89.7 129 43.4
Manes.14G135800 Manihot esculenta HOM05D003668 ORTHO05D004242 2.0e-16 89.7 130 43.1
Nitab4.5_0004092g0020 Nicotiana tabacum HOM05D003668 ORTHO05D004242 2.0e-16 89.7 174 36.2
MD13G1028500 Malus domestica HOM05D003668 ORTHO05D004242 2.7e-16 89.4 127 45.7
Atru.chr11.362 Acer truncatum HOM05D003668 ORTHO05D004242 3.5e-16 89.0 173 37.6
Haze_11039 Corylus avellana HOM05D003668 ORTHO05D004242 4.5e-16 88.6 122 46.7
Gorai.005G163600 Gossypium raimondii HOM05D003668 ORTHO05D004242 4.5e-16 88.6 129 46.5
Nn3g18032 Nelumbo nucifera HOM05D003668 ORTHO05D004242 4.5e-16 88.6 129 44.2
CAN.G1693.10 Capsicum annuum HOM05D003668 ORTHO05D004242 5.9e-16 88.2 131 45.0
Psat6g222240 Pisum sativum HOM05D003668 ORTHO05D004242 5.9e-16 88.2 131 42.7
Cpa.g.sc65.109 Carica papaya HOM05D003668 ORTHO05D004242 7.8e-16 87.8 129 45.0
Dinv16191 Davidia involucrata HOM05D003668 ORTHO05D004242 7.8e-16 87.8 133 42.9
Migut.L00659 Erythranthe guttata HOM05D003668 ORTHO05D004242 1.0e-15 87.4 124 45.2
Migut.L00756 Erythranthe guttata HOM05D003668 ORTHO05D004242 1.0e-15 87.4 124 45.2
Prupe.1G321800 Prunus persica HOM05D003668 ORTHO05D004242 1.0e-15 87.4 133 42.1
QL01p002314 Quercus lobata HOM05D003668 ORTHO05D004242 1.0e-15 87.4 125 45.6
Dinv05883 Davidia involucrata HOM05D003668 ORTHO05D004242 1.3e-15 87.0 137 43.8
Gohir.A05G309600 Gossypium hirsutum HOM05D003668 ORTHO05D004242 1.3e-15 87.0 133 44.4
Gorai.009G331400 Gossypium raimondii HOM05D003668 ORTHO05D004242 1.3e-15 87.0 133 44.4
Duzib268G0050 Durio zibethinus HOM05D003668 ORTHO05D004242 1.7e-15 86.7 133 42.9
Gohir.D05G310500 Gossypium hirsutum HOM05D003668 ORTHO05D004242 1.7e-15 86.7 133 44.4
CDE07G1523 Ceratophyllum demersum HOM05D003668 ORTHO05D004242 2.3e-15 86.3 142 39.4
COL.COLO4_20446 Corchorus olitorius HOM05D003668 ORTHO05D004242 2.3e-15 86.3 129 41.9
CiPaw.05G247100 Carya illinoinensis HOM05D003668 ORTHO05D004242 2.9e-15 85.9 128 43.0
Manes.06G062100 Manihot esculenta HOM05D003668 ORTHO05D004242 2.9e-15 85.9 128 41.4
Sopen04g002690 Solanum pennellii HOM05D003668 ORTHO05D004242 2.9e-15 85.9 133 43.6
Nitab4.5_0001648g0080 Nicotiana tabacum HOM05D003668 ORTHO05D004242 3.8e-15 85.5 131 42.7
Phvul.007G035900 Phaseolus vulgaris HOM05D003668 ORTHO05D004242 3.8e-15 85.5 124 42.7
Solyc04g007610.3 Solanum lycopersicum HOM05D003668 ORTHO05D004242 3.8e-15 85.5 133 43.6
Duzib251G0842 Durio zibethinus HOM05D003668 ORTHO05D004242 5.0e-15 85.1 133 42.1
PGSC0003DMG400005962 Solanum tuberosum HOM05D003668 ORTHO05D004242 5.0e-15 85.1 132 42.4
SGA_v2.0_scaffold50G18529 Striga asiatica HOM05D003668 ORTHO05D004242 5.0e-15 85.1 124 43.5
Glyma.10G265900 Glycine max HOM05D003668 ORTHO05D004242 6.6e-15 84.7 125 44.0
Lj3A875T61 Lonicera japonica HOM05D003668 ORTHO05D004242 6.6e-15 84.7 163 36.8
Nn4g24060 Nelumbo nucifera HOM05D003668 ORTHO05D004242 6.6e-15 84.7 129 41.9
Nitab4.5_0000414g0090 Nicotiana tabacum HOM05D003668 ORTHO05D004242 6.6e-15 84.7 131 43.5
Peaxi162Scf00119g01535 Petunia axillaris HOM05D003668 ORTHO05D004242 8.6e-15 84.3 131 42.7
Sabra08G0096100 Salix brachista HOM05D003668 ORTHO05D004242 8.6e-15 84.3 133 42.1
Glyma.20G124700 Glycine max HOM05D003668 ORTHO05D004242 1.1e-14 84.0 125 44.0
SalBow8G3356 Salvia bowleyana HOM05D003668 ORTHO05D004242 1.1e-14 84.0 123 42.3
Aqoxy3G00162 Aquilegia oxysepala HOM05D003668 ORTHO05D004242 1.5e-14 83.6 129 42.6
MSTRG.884 Avicennia marina HOM05D003668 ORTHO05D004242 1.5e-14 83.6 122 41.0
DCAR_030206 Daucus carota HOM05D003668 ORTHO05D004242 1.9e-14 83.2 123 42.3
TWI79G0359 Tripterygium wilfordii HOM05D003668 ORTHO05D004242 1.9e-14 83.2 129 43.4
Potri.010G115700 Populus trichocarpa HOM05D003668 ORTHO05D004242 3.3e-14 82.4 133 42.9
GSVIVG01011788001 Vitis vinifera HOM05D003668 ORTHO05D004242 3.3e-14 82.4 133 41.4
Zm00001eb295030 Zea mays HOM05D003668 ORTHO05D004242 3.3e-14 82.4 169 36.1
TAR622G1157 Trochodendron aralioides HOM05D003668 ORTHO05D004242 4.3e-14 82.0 134 41.0
CAN.G359.7 Capsicum annuum HOM05D003668 ORTHO05D004242 5.6e-14 81.6 130 40.8
HanXRQChr08g0212821 Helianthus annuus HOM05D003668 ORTHO05D004242 5.6e-14 81.6 125 44.0
Oeu004307.1 Olea europaea HOM05D003668 ORTHO05D004242 5.6e-14 81.6 130 43.1
Thecc.02G278000 Theobroma cacao HOM05D003668 ORTHO05D004242 5.6e-14 81.6 129 42.6
CANSAT01G1684 Cannabis sativa HOM05D003668 ORTHO05D004242 9.5e-14 80.9 169 36.1
TWI31G1185 Tripterygium wilfordii HOM05D003668 ORTHO05D004242 9.5e-14 80.9 129 42.6
MBI05_g00408_MAGBIO Magnolia biondii HOM05D003668 ORTHO05D004242 1.6e-13 80.1 130 43.8
Eucgr.B02887 Eucalyptus grandis HOM05D003668 ORTHO05D004242 2.8e-13 79.3 129 42.6
Hma1.2p1_0601F.1_g187240 Hydrangea macrophylla HOM05D003668 ORTHO05D004242 2.8e-13 79.3 125 37.6
Sabra10G0085600 Salix brachista HOM05D003668 ORTHO05D004242 2.8e-13 79.3 130 40.8
Cc11_g09050 Coffea canephora HOM05D003668 ORTHO05D004242 4.7e-13 78.6 130 40.8
PSO017G0236 Papaver somniferum HOM05D003668 ORTHO05D004242 8.0e-13 77.8 141 37.6
ATR0326G075 Amborella trichopoda HOM05D003668 ORTHO05D004242 1.0e-12 77.4 134 40.3
DCAR_007279 Daucus carota HOM05D003668 ORTHO05D004242 1.0e-12 77.4 125 40.8
A02p31850 Brassica napus HOM05D003668 ORTHO05D004242 1.4e-12 77.0 128 42.2
BraA02t08194Z Brassica rapa HOM05D003668 ORTHO05D004242 1.4e-12 77.0 128 42.2
CARHR143800 Cardamine hirsuta HOM05D003668 ORTHO05D004242 3.0e-12 75.9 127 42.5
Oeu044332.1 Olea europaea HOM05D003668 ORTHO05D004242 3.0e-12 75.9 146 38.4
CDE06G0369 Ceratophyllum demersum HOM05D003668 ORTHO05D004242 4.0e-12 75.5 126 42.1
AT2G01270 Arabidopsis thaliana HOM05D003668 ORTHO05D004242 6.8e-12 74.7 135 40.0
BcaC03g17018 Brassica carinata HOM05D003668 ORTHO05D004242 8.9e-12 74.3 128 40.6
C02p49290 Brassica napus HOM05D003668 ORTHO05D004242 8.9e-12 74.3 128 40.6
BolC2t11016H Brassica oleracea HOM05D003668 ORTHO05D004242 8.9e-12 74.3 128 40.6
Aa31LG2G8640 Aethionema arabicum HOM05D003668 ORTHO05D004242 1.2e-11 73.9 126 38.1
CARHR015560 Cardamine hirsuta HOM05D003668 ORTHO05D004242 2.0e-11 73.2 126 42.1
Peaxi162Scf00205g00617 Petunia axillaris HOM05D003668 ORTHO05D004242 2.0e-11 73.2 137 35.8
Thhalv10000862m.g Eutrema salsugineum HOM05D003668 ORTHO05D004242 3.4e-11 72.4 129 40.3
AL5G10220 Arabidopsis lyrata HOM05D003668 ORTHO05D004242 4.4e-11 72.0 135 38.5
Carub.0001s1479 Capsella rubella HOM05D003668 ORTHO05D004242 4.4e-11 72.0 130 40.0
Carub.0005s0025 Capsella rubella HOM05D003668 ORTHO05D004242 4.4e-11 72.0 131 38.9
A09p61640 Brassica napus HOM05D003668 ORTHO05D004242 5.7e-11 71.6 125 40.0
BraA09t41536Z Brassica rapa HOM05D003668 ORTHO05D004242 5.7e-11 71.6 125 40.0
HPP92_020133 Vanilla planifolia HOM05D003668 ORTHO05D004242 5.7e-11 71.6 179 30.7
Thhalv10007339m.g Eutrema salsugineum HOM05D003668 ORTHO05D004242 9.8e-11 70.9 131 38.9
Sp2g12730 Schrenkiella parvula HOM05D003668 ORTHO05D004242 9.8e-11 70.9 124 41.1
AT1G15020 Arabidopsis thaliana HOM05D003668 ORTHO05D004242 1.3e-10 70.5 130 39.2
BcaB07g30412 Brassica carinata HOM05D003668 ORTHO05D004242 1.3e-10 70.5 128 39.1
BcaC05g25439 Brassica carinata HOM05D003668 ORTHO05D004242 1.3e-10 70.5 131 36.6
C07p31700 Brassica napus HOM05D003668 ORTHO05D004242 1.3e-10 70.5 111 38.7
BolC7t43709H Brassica oleracea HOM05D003668 ORTHO05D004242 1.3e-10 70.5 111 38.7
Sp1g13410 Schrenkiella parvula HOM05D003668 ORTHO05D004242 1.3e-10 70.5 130 37.7
C05p13170 Brassica napus HOM05D003668 ORTHO05D004242 1.7e-10 70.1 131 36.6
PSO478G1788 Papaver somniferum HOM05D003668 ORTHO05D004242 1.7e-10 70.1 136 36.0
C08p45220 Brassica napus HOM05D003668 ORTHO05D004242 2.2e-10 69.7 125 39.2
BolC5t30053H Brassica oleracea HOM05D003668 ORTHO05D004242 2.2e-10 69.7 131 36.6
BolC8t52070H Brassica oleracea HOM05D003668 ORTHO05D004242 2.2e-10 69.7 125 39.2
BcaB02g06571 Brassica carinata HOM05D003668 ORTHO05D004242 3.7e-10 68.9 130 37.7
A06p11040 Brassica napus HOM05D003668 ORTHO05D004242 3.7e-10 68.9 126 34.9
BraA06t24284Z Brassica rapa HOM05D003668 ORTHO05D004242 3.7e-10 68.9 131 35.1
Aa31LG1G80 Aethionema arabicum HOM05D003668 ORTHO05D004242 6.4e-10 68.2 141 36.2
AL1G27090 Arabidopsis lyrata HOM05D003668 ORTHO05D004242 6.4e-10 68.2 126 38.1
BcaB02g06567 Brassica carinata HOM05D003668 ORTHO05D004242 6.4e-10 68.2 125 40.0
SMO092G0001 Selaginella moellendorffii HOM05D003668 ORTHO05D004242 8.3e-10 67.8 162 29.6
SMO351G0322 Selaginella moellendorffii HOM05D003668 ORTHO05D004242 8.3e-10 67.8 162 29.6
TAR629G1414 Trochodendron aralioides HOM05D003668 ORTHO05D004242 1.4e-09 67.0 49 65.3
MBI10_g37695_MAGBIO Magnolia biondii HOM05D003668 ORTHO05D004242 3.2e-09 65.9 44 68.2
AUR62041242 Chenopodium quinoa HOM05D003668 ORTHO05D004242 4.1e-09 65.5 167 28.7
AUR62014140 Chenopodium quinoa HOM05D003668 ORTHO05D004242 1.2e-08 63.9 155 31.6
Lsat_1_v5_gn_8_42960 Lactuca sativa HOM05D003668 ORTHO05D004242 1.0e-07 60.8 114 39.5
ClCG05G022250 Citrullus lanatus HOM05D003668 ORTHO05D004242 6.6e-07 58.2 164 33.5
HanXRQChr02g0034111 Helianthus annuus HOM05D003668 ORTHO05D226614 8.6e-07 57.8 39 79.5
Pp3c20_23660 Physcomitrium patens HOM05D003668 ORTHO05D004242 1.5e-06 57.0 171 24.6


User provided reference genes

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