Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 5.0e-82 307.8 160 100.0
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 3.2e-68 261.9 144 96.5
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 4.7e-64 248.1 144 89.6
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 4.7e-64 248.1 144 90.3
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 3.4e-62 241.9 144 86.8
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 1.3e-61 240.0 144 85.4
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 8.3e-61 237.3 142 85.2
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.1e-60 236.9 142 84.5
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.1e-60 236.9 142 84.5
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 1.9e-60 236.1 144 83.3
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 4.1e-60 235.0 144 82.6
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 4.1e-60 235.0 144 82.6
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 5.4e-60 234.6 142 85.2
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 9.2e-60 233.8 144 81.9
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 1.2e-59 233.4 142 84.5
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 1.2e-59 233.4 144 82.6
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 1.2e-59 233.4 144 82.6
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 1.2e-59 233.4 142 82.4
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 1.6e-59 233.0 142 83.8
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 2.1e-59 232.6 142 83.1
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 3.5e-59 231.9 142 82.4
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 4.6e-59 231.5 142 83.8
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 6.0e-59 231.1 144 81.9
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 6.0e-59 231.1 144 81.9
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 7.8e-59 230.7 142 81.7
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 7.8e-59 230.7 142 83.1
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 1.3e-58 229.9 142 83.1
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 1.3e-58 229.9 144 81.9
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 1.3e-58 229.9 142 81.0
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 2.3e-58 229.2 144 80.6
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 3.0e-58 228.8 142 81.7
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 3.0e-58 228.8 144 81.2
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 3.0e-58 228.8 142 81.7
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 3.9e-58 228.4 142 81.0
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 3.9e-58 228.4 144 79.9
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 3.9e-58 228.4 142 83.1
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 3.9e-58 228.4 142 82.4
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 3.9e-58 228.4 142 82.4
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 3.9e-58 228.4 142 81.7
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 5.1e-58 228.0 142 83.8
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 5.1e-58 228.0 142 81.7
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 5.1e-58 228.0 142 81.7
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 5.1e-58 228.0 142 81.7
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 5.1e-58 228.0 142 81.7
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 6.6e-58 227.6 144 80.6
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 6.6e-58 227.6 142 81.7
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 6.6e-58 227.6 142 81.0
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 6.6e-58 227.6 142 81.7
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 8.6e-58 227.3 144 81.2
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 1.1e-57 226.9 142 81.0
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 1.1e-57 226.9 143 80.4
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 1.1e-57 226.9 142 80.3
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 1.1e-57 226.9 142 80.3
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 1.1e-57 226.9 142 83.1
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 1.1e-57 226.9 142 81.0
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 1.5e-57 226.5 142 79.6
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 1.5e-57 226.5 144 79.9
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 1.5e-57 226.5 144 79.9
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 1.5e-57 226.5 144 79.9
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 1.5e-57 226.5 144 79.9
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 1.9e-57 226.1 142 81.0
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 1.9e-57 226.1 140 81.4
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 1.9e-57 226.1 144 79.2
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 1.9e-57 226.1 142 80.3
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 1.9e-57 226.1 143 79.7
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 1.9e-57 226.1 142 80.3
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 2.5e-57 225.7 139 82.0
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 2.5e-57 225.7 142 80.3
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 3.3e-57 225.3 140 81.4
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 3.3e-57 225.3 140 81.4
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 3.3e-57 225.3 142 80.3
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 4.3e-57 224.9 139 81.3
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 4.3e-57 224.9 140 81.4
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 4.3e-57 224.9 142 81.0
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 5.6e-57 224.6 140 81.4
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 5.6e-57 224.6 139 83.5
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 5.6e-57 224.6 142 78.2
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 7.3e-57 224.2 144 78.5
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 7.3e-57 224.2 142 80.3
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 1.2e-56 223.4 140 80.0
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 1.2e-56 223.4 140 80.0
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 1.2e-56 223.4 140 80.0
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 1.2e-56 223.4 140 80.0
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 1.2e-56 223.4 140 80.0
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 1.2e-56 223.4 140 80.0
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 1.2e-56 223.4 142 80.3
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 1.2e-56 223.4 143 79.0
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 1.6e-56 223.0 142 78.9
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 1.6e-56 223.0 142 80.3
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 1.6e-56 223.0 142 79.6
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 1.6e-56 223.0 142 81.0
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 2.1e-56 222.6 142 78.9
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 2.8e-56 222.2 139 79.9
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 2.8e-56 222.2 142 79.6
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 2.8e-56 222.2 142 78.9
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 3.6e-56 221.9 142 80.3
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 3.6e-56 221.9 142 79.6
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 4.7e-56 221.5 142 80.3
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 4.7e-56 221.5 144 77.1
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 8.1e-56 220.7 142 78.9
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 8.1e-56 220.7 143 79.0
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.1e-55 220.3 142 78.2
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 1.4e-55 219.9 139 79.1
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 1.8e-55 219.5 144 78.5
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 3.1e-55 218.8 142 78.9
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 3.1e-55 218.8 142 79.6
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 4.0e-55 218.4 142 78.2
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 1.2e-54 216.9 139 79.9
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 1.2e-54 216.9 144 77.1
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 2.0e-54 216.1 142 77.5
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 3.4e-54 215.3 142 78.2
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 4.4e-54 214.9 142 73.9
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 4.4e-54 214.9 142 75.4
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 1.3e-53 213.4 142 76.1
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 1.3e-53 213.4 143 77.6
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 8.3e-53 210.7 142 73.9
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 1.4e-52 209.9 142 78.9
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 2.4e-52 209.1 132 80.3
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 9.2e-52 207.2 142 74.6
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 1.2e-51 206.8 142 74.6
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 1.6e-51 206.5 142 71.1
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 4.6e-51 204.9 141 73.8
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 2.3e-50 202.6 156 67.9
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 3.9e-50 201.8 139 72.7
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 1.1e-49 200.3 142 72.5
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 4.3e-49 198.4 144 72.9
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 7.3e-49 197.6 123 82.1
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 2.1e-48 196.1 141 72.3
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 2.1e-48 196.1 145 68.3
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 1.4e-47 193.4 144 68.8
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 3.1e-47 192.2 143 68.5
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 5.2e-47 191.4 143 67.8
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 3.3e-41 172.2 120 73.3
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 4.3e-41 171.8 144 61.8
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 1.1e-33 147.1 142 60.6
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 2.5e-33 146.0 142 58.5
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 2.4e-23 112.8 71 77.5
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 5.3e-23 111.7 102 52.9
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 2.0e-22 109.8 141 51.8
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 8.7e-18 94.4 64 73.4
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 4.5e-06 55.5 31 74.2


User provided reference genes

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