Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 3.0e-46 188.0 84 100.0
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 1.1e-40 169.5 88 88.6
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 1.5e-40 169.1 82 93.9
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 8.0e-39 163.3 85 85.9
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 1.5e-37 159.1 84 81.0
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 1.5e-37 159.1 90 78.9
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 1.5e-37 159.1 89 82.0
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 3.4e-37 157.9 83 84.3
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 4.4e-37 157.5 82 85.4
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 5.7e-37 157.1 89 82.0
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 5.7e-37 157.1 84 85.7
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 9.8e-37 156.4 86 79.1
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 9.8e-37 156.4 85 82.4
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 3.7e-36 154.5 83 85.5
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 3.7e-36 154.5 89 77.5
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 4.9e-36 154.1 86 77.9
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 4.9e-36 154.1 83 84.3
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 4.9e-36 154.1 82 82.9
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 6.4e-36 153.7 84 81.0
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 6.4e-36 153.7 83 79.5
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 6.4e-36 153.7 87 77.0
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 8.3e-36 153.3 84 81.0
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 1.4e-35 152.5 83 81.9
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 1.4e-35 152.5 82 80.5
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 1.4e-35 152.5 89 77.5
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 1.8e-35 152.1 84 81.0
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 3.2e-35 151.4 88 79.5
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 3.2e-35 151.4 85 82.4
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 4.1e-35 151.0 81 84.0
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 5.4e-35 150.6 85 82.4
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 7.0e-35 150.2 86 79.1
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 7.0e-35 150.2 87 74.7
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 9.2e-35 149.8 83 80.7
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 9.2e-35 149.8 83 80.7
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 9.2e-35 149.8 81 82.7
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 9.2e-35 149.8 84 78.6
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 9.2e-35 149.8 84 78.6
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 9.2e-35 149.8 84 78.6
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 1.2e-34 149.4 88 76.1
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 1.2e-34 149.4 83 79.5
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.2e-34 149.4 81 79.0
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 1.2e-34 149.4 82 79.3
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 1.6e-34 149.1 84 79.8
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 2.7e-34 148.3 84 77.4
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 2.7e-34 148.3 82 79.3
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 2.7e-34 148.3 82 79.3
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 2.7e-34 148.3 83 78.3
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 3.5e-34 147.9 88 75.0
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 3.5e-34 147.9 86 77.9
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 3.5e-34 147.9 84 77.4
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 5.9e-34 147.1 86 74.4
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 5.9e-34 147.1 86 74.4
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 5.9e-34 147.1 83 79.5
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 7.8e-34 146.7 86 75.6
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 7.8e-34 146.7 83 77.1
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 7.8e-34 146.7 88 75.0
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.0e-33 146.4 81 77.8
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 1.0e-33 146.4 84 76.2
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 1.3e-33 146.0 82 78.0
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 1.3e-33 146.0 84 76.2
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 1.7e-33 145.6 80 80.0
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 1.7e-33 145.6 80 80.0
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 2.3e-33 145.2 82 78.0
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 2.3e-33 145.2 85 74.1
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 2.3e-33 145.2 82 78.0
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 2.3e-33 145.2 82 79.3
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 2.3e-33 145.2 82 80.5
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 3.0e-33 144.8 85 76.5
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 3.9e-33 144.4 82 76.8
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 3.9e-33 144.4 82 78.0
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 3.9e-33 144.4 79 78.5
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 3.9e-33 144.4 79 78.5
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 3.9e-33 144.4 84 77.4
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 3.9e-33 144.4 83 78.3
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 3.9e-33 144.4 85 74.1
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 5.0e-33 144.1 82 78.0
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 5.0e-33 144.1 84 75.0
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 5.0e-33 144.1 84 73.8
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 6.6e-33 143.7 82 78.0
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 6.6e-33 143.7 84 73.8
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 6.6e-33 143.7 84 73.8
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 8.6e-33 143.3 84 75.0
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 8.6e-33 143.3 88 77.3
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 1.1e-32 142.9 81 74.1
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.5e-32 142.5 83 78.3
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.5e-32 142.5 83 78.3
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.5e-32 142.5 83 78.3
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 1.5e-32 142.5 84 75.0
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 1.9e-32 142.1 84 73.8
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.9e-32 142.1 84 77.4
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 2.5e-32 141.7 82 75.6
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 3.3e-32 141.4 80 78.8
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 3.3e-32 141.4 80 78.8
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 7.3e-32 140.2 72 80.6
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 7.3e-32 140.2 85 72.9
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 9.5e-32 139.8 82 75.6
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 9.5e-32 139.8 83 73.5
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 1.2e-31 139.4 82 74.4
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 2.1e-31 138.7 82 74.4
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 3.6e-31 137.9 82 75.6
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 4.7e-31 137.5 82 74.4
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 8.0e-31 136.7 86 72.1
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 8.0e-31 136.7 79 75.9
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 1.8e-30 135.6 82 74.4
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 1.8e-30 135.6 76 77.6
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 2.3e-30 135.2 155 48.4
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 6.8e-30 133.7 85 70.6
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 1.2e-29 132.9 85 70.6
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 2.0e-29 132.1 63 88.9
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 2.6e-29 131.7 96 64.6
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 2.7e-26 121.7 63 81.0
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 1.1e-24 116.3 79 67.1
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 8.1e-23 110.2 80 65.0
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 1.2e-21 106.3 62 80.6
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 2.6e-21 105.1 63 76.2
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 2.6e-21 105.1 62 80.6
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 1.7e-20 102.4 63 74.6
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 2.2e-20 102.1 62 75.8
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 3.7e-20 101.3 62 75.8
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 1.1e-19 99.8 61 80.3
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 1.4e-19 99.4 57 78.9
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 4.1e-19 97.8 60 71.7
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 4.1e-19 97.8 59 76.3
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 1.6e-18 95.9 61 63.9
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 2.7e-18 95.1 60 73.3
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 2.7e-18 95.1 59 74.6
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 3.5e-18 94.7 59 71.2
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 3.5e-18 94.7 57 78.9
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 3.5e-18 94.7 57 78.9
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 3.5e-18 94.7 62 72.6
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 6.0e-18 94.0 59 74.6
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 7.8e-18 93.6 61 72.1
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 7.8e-18 93.6 66 74.2
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 1.0e-17 93.2 59 74.6
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 1.3e-17 92.8 61 70.5
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 1.7e-17 92.4 57 73.7
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 3.0e-17 91.7 64 71.9
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 3.9e-17 91.3 59 72.9
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 6.6e-17 90.5 59 72.9
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 8.6e-17 90.1 59 72.9
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 2.8e-15 85.1 64 67.2
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 5.8e-13 77.4 76 51.3
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.9e-12 75.1 39 84.6
PRCOL_00003506 Prasinoderma coloniale HOM05D005277 ORTHO05D006319 6.4e-12 73.9 65 50.8
MCO13G435 Micromonas commoda HOM05D005277 ORTHO05D006319 7.8e-10 67.0 62 48.4


User provided reference genes

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