Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0054571 Helianthus annuus HOM05D003715 ORTHO05D003958 2.1e-146 522.3 258 100.0
HanXRQChr13g0397871 Helianthus annuus HOM05D003715 ORTHO05D003958 1.4e-86 323.6 267 67.0
Lsat_1_v5_gn_6_37461 Lactuca sativa HOM05D003715 ORTHO05D003958 1.1e-73 280.8 264 58.0
ECA233G0839 Erigeron canadensis HOM05D003715 ORTHO05D003958 4.2e-70 268.9 269 58.4
ECA238G2879 Erigeron canadensis HOM05D003715 ORTHO05D003958 2.4e-62 243.0 282 51.4
HanXRQChr14g0438161 Helianthus annuus HOM05D003715 ORTHO05D003958 5.5e-62 241.9 285 51.6
Lsat_1_v5_gn_2_58261 Lactuca sativa HOM05D003715 ORTHO05D003958 8.7e-44 181.4 248 47.2
Hma1.2p1_0152F.1_g067600 Hydrangea macrophylla HOM05D003715 ORTHO05D003958 8.5e-39 164.9 282 39.7
Cfa001533 Carpinus fangiana HOM05D003715 ORTHO05D003958 3.3e-35 152.9 306 37.9
Dinv14575 Davidia involucrata HOM05D003715 ORTHO05D003958 1.7e-34 150.6 295 39.0
Haze_19430 Corylus avellana HOM05D003715 ORTHO05D003958 4.8e-34 149.1 308 36.0
Manes.09G140500 Manihot esculenta HOM05D003715 ORTHO05D003958 8.2e-34 148.3 289 37.0
Atru.chr2.1400 Acer truncatum HOM05D003715 ORTHO05D003958 1.8e-33 147.1 300 37.0
QL07p018445 Quercus lobata HOM05D003715 ORTHO05D003958 2.0e-32 143.7 310 37.7
Actinidia22080 Actinidia chinensis HOM05D003715 ORTHO05D003958 2.6e-32 143.3 318 37.1
TWI32G0411 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 1.7e-31 140.6 304 36.5
CiPaw.10G001300 Carya illinoinensis HOM05D003715 ORTHO05D003958 2.2e-31 140.2 312 34.3
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 2.2e-31 140.2 301 36.2
Eucgr.A02102 Eucalyptus grandis HOM05D003715 ORTHO05D003958 1.4e-30 137.5 302 36.8
Manes.08G145000 Manihot esculenta HOM05D003715 ORTHO05D003958 1.4e-30 137.5 288 36.8
Sopen10g029220 Solanum pennellii HOM05D003715 ORTHO05D003958 1.9e-30 137.1 273 39.6
MSTRG.26069 Avicennia marina HOM05D003715 ORTHO05D003958 2.5e-30 136.7 281 35.9
Dinv37021 Davidia involucrata HOM05D003715 ORTHO05D003958 2.5e-30 136.7 272 38.2
PGSC0003DMG400008354 Solanum tuberosum HOM05D003715 ORTHO05D003958 4.2e-30 136.0 269 39.4
Solyc10g078590.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 5.5e-30 135.6 273 39.2
DCAR_019875 Daucus carota HOM05D003715 ORTHO05D003958 7.2e-30 135.2 284 35.6
vmacro12564 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 1.2e-29 134.4 303 36.6
Peaxi162Scf00463g00019 Petunia axillaris HOM05D003715 ORTHO05D003958 1.6e-29 134.0 297 37.4
Potri.019G035600 Populus trichocarpa HOM05D003715 ORTHO05D003958 2.1e-29 133.7 312 34.6
Nitab4.5_0002769g0040 Nicotiana tabacum HOM05D003715 ORTHO05D003958 3.6e-29 132.9 278 38.8
Sabra19G0044200 Salix brachista HOM05D003715 ORTHO05D003958 1.4e-28 131.0 313 32.6
Sabra19G0047500 Salix brachista HOM05D003715 ORTHO05D003958 1.4e-28 131.0 313 32.6
Oeu024502.1 Olea europaea HOM05D003715 ORTHO05D003958 1.8e-28 130.6 289 35.3
Aqoxy2G00514 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 3.0e-28 129.8 277 35.7
Oeu035703.1 Olea europaea HOM05D003715 ORTHO05D003958 3.0e-28 129.8 289 35.6
Nitab4.5_0000658g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.1e-27 127.9 304 35.2
Ca_08274_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 7.4e-27 125.2 282 35.1
TWI34G1349 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 1.7e-26 124.0 311 35.0
Thecc.05G249800 Theobroma cacao HOM05D003715 ORTHO05D003958 4.8e-26 122.5 291 33.7
EL10Ac3g06828 Beta vulgaris HOM05D003715 ORTHO05D003958 1.4e-25 120.9 288 35.4
PGR142G1981 Punica granatum HOM05D003715 ORTHO05D003958 1.4e-25 120.9 305 32.5
Potri.013G057200 Populus trichocarpa HOM05D003715 ORTHO05D003958 1.8e-25 120.6 311 32.5
Ca_04486_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 3.1e-25 119.8 273 33.7
TPR.G5870 Trifolium pratense HOM05D003715 ORTHO05D003958 5.3e-25 119.0 261 37.2
Sabra13G0051000 Salix brachista HOM05D003715 ORTHO05D003958 7.0e-25 118.6 311 34.1
MBI04_g28023_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 2.0e-24 117.1 215 40.9
MBI04_g47731_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 2.0e-24 117.1 215 40.9
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 7.7e-24 115.2 183 41.0
Medtr6g029250 Medicago truncatula HOM05D003715 ORTHO05D003958 2.2e-23 113.6 260 33.8
TPR.G9142 Trifolium pratense HOM05D003715 ORTHO05D003958 2.2e-23 113.6 268 35.4
PGR042G0616 Punica granatum HOM05D003715 ORTHO05D003958 2.9e-23 113.2 278 33.1
VMungo0464G1653 Vigna mungo HOM05D003715 ORTHO05D003958 3.8e-23 112.8 292 31.2
Lj1g0002462 Lotus japonicus HOM05D003715 ORTHO05D003958 5.0e-23 112.5 269 33.5
Ciclev10021362m.g Citrus clementina HOM05D003715 ORTHO05D003958 6.5e-23 112.1 309 32.7
Glyma.16G153700 Glycine max HOM05D003715 ORTHO05D003958 6.5e-23 112.1 281 32.7
Psat3g088760 Pisum sativum HOM05D003715 ORTHO05D003958 6.5e-23 112.1 276 33.3
Lalb_Chr02g0157161 Lupinus albus HOM05D003715 ORTHO05D003958 1.1e-22 111.3 277 31.4
COL.COLO4_36085 Corchorus olitorius HOM05D003715 ORTHO05D003958 1.5e-22 110.9 286 33.6
MELO3C008806.2 Cucumis melo HOM05D003715 ORTHO05D003958 1.5e-22 110.9 304 33.2
PSO339G5928 Papaver somniferum HOM05D003715 ORTHO05D003958 1.5e-22 110.9 226 36.7
Gorai.007G262000 Gossypium raimondii HOM05D003715 ORTHO05D003958 1.9e-22 110.5 294 35.0
Sc13g0002630 Simmondsia chinensis HOM05D003715 ORTHO05D003958 1.9e-22 110.5 308 31.5
Actinidia30549 Actinidia chinensis HOM05D003715 ORTHO05D003958 2.5e-22 110.2 234 37.2
Hund19231 Selenicereus undatus HOM05D003715 ORTHO05D003958 2.5e-22 110.2 287 33.1
ClCG04G005350 Citrullus lanatus HOM05D003715 ORTHO05D003958 3.2e-22 109.8 306 34.3
Duzib106G1922 Durio zibethinus HOM05D003715 ORTHO05D003958 3.2e-22 109.8 295 33.2
MBI01_g25640_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 3.2e-22 109.8 223 38.1
CsaV3_4G013240 Cucumis sativus L. HOM05D003715 ORTHO05D003958 4.2e-22 109.4 304 33.6
Peaxi162Scf00003g04827 Petunia axillaris HOM05D003715 ORTHO05D003958 4.2e-22 109.4 266 36.1
Phvul.004G080700 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 5.5e-22 109.0 294 30.6
PSO384G3755 Papaver somniferum HOM05D003715 ORTHO05D003958 7.2e-22 108.6 211 37.9
Gohir.A11G235300 Gossypium hirsutum HOM05D003715 ORTHO05D003958 9.4e-22 108.2 293 34.8
Lalb_Chr22g0359081 Lupinus albus HOM05D003715 ORTHO05D003958 9.4e-22 108.2 285 36.5
PSO781G0019 Papaver somniferum HOM05D003715 ORTHO05D003958 9.4e-22 108.2 206 39.8
Gohir.D11G246200 Gossypium hirsutum HOM05D003715 ORTHO05D003958 1.2e-21 107.8 291 34.0
Glyma.02G072500 Glycine max HOM05D003715 ORTHO05D003958 2.1e-21 107.1 279 31.9
CANSAT78G1806 Cannabis sativa HOM05D003715 ORTHO05D003958 2.7e-21 106.7 199 37.7
Nitab4.5_0000394g0140 Nicotiana tabacum HOM05D003715 ORTHO05D003958 3.6e-21 106.3 293 34.8
Nitab4.5_0000358g0150 Nicotiana tabacum HOM05D003715 ORTHO05D003958 4.7e-21 105.9 281 35.6
TAR633G2492 Trochodendron aralioides HOM05D003715 ORTHO05D003958 4.7e-21 105.9 296 30.7
Medtr7g085790 Medicago truncatula HOM05D003715 ORTHO05D003958 1.0e-20 104.8 274 33.9
Lj1g0012553 Lotus japonicus HOM05D003715 ORTHO05D003958 1.8e-20 104.0 284 31.7
TAR369G0375 Trochodendron aralioides HOM05D003715 ORTHO05D003958 3.0e-20 103.2 262 32.4
vmacro09135 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 6.7e-20 102.1 237 32.1
arahy.Tifrunner.gnm1.ann1.V3MY1S Arachis hypogaea HOM05D003715 ORTHO05D003958 8.8e-20 101.7 266 28.9
CiPaw.09G002400 Carya illinoinensis HOM05D003715 ORTHO05D003958 1.1e-19 101.3 260 32.3
SalBow1G3164 Salvia bowleyana HOM05D003715 ORTHO05D003958 1.5e-19 100.9 266 32.3
MD14G1003600 Malus domestica HOM05D003715 ORTHO05D003958 2.0e-19 100.5 300 33.0
Nn2g12054 Nelumbo nucifera HOM05D003715 ORTHO05D003958 3.3e-19 99.8 279 33.7
Prupe.7G006100 Prunus persica HOM05D003715 ORTHO05D003958 7.5e-19 98.6 305 30.5
Nitab4.5_0009367g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 2.2e-18 97.1 266 32.0
Rhsim04G0091400 Rhododendron simsii HOM05D006013 ORTHO05D007383 2.2e-18 97.1 248 32.3
Sed0021221 Sechium edule HOM05D003715 ORTHO05D003958 2.2e-18 97.1 285 32.3
SGA_v2.0_scaffold94G28404 Striga asiatica HOM05D003715 ORTHO05D003958 2.2e-18 97.1 261 33.0
Thhalv10014292m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 2.8e-18 96.7 306 32.0
Lalb_Chr14g0364551 Lupinus albus HOM05D003715 ORTHO05D003958 6.3e-18 95.5 269 31.2
Glyma.16G040300 Glycine max HOM05D003715 ORTHO05D003958 8.2e-18 95.1 298 30.9
Nitab4.5_0001079g0120 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.1e-17 94.7 264 31.8
Carub.0006s1642 Capsella rubella HOM05D003715 ORTHO05D003958 1.8e-17 94.0 283 32.5
Glyma.19G112800 Glycine max HOM05D003715 ORTHO05D003958 2.4e-17 93.6 175 36.6
Cc06_g23060 Coffea canephora HOM05D003715 ORTHO05D003958 3.1e-17 93.2 162 38.3
Sed0002226 Sechium edule HOM05D003715 ORTHO05D003958 3.1e-17 93.2 230 33.0
Actinidia38611 Actinidia chinensis HOM05D003715 ORTHO05D003958 5.3e-17 92.4 260 33.5
C02p09710 Brassica napus HOM05D003715 ORTHO05D003958 5.3e-17 92.4 283 30.7
BolC2t06880H Brassica oleracea HOM05D003715 ORTHO05D003958 5.3e-17 92.4 283 30.7
MD12G1005100 Malus domestica HOM05D003715 ORTHO05D003958 5.3e-17 92.4 297 34.7
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 9.1e-17 91.7 239 32.2
BraA02t05434Z Brassica rapa HOM05D003715 ORTHO05D003958 1.2e-16 91.3 284 30.6
AT5G18130 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 2.0e-16 90.5 293 32.1
AL6G29330 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 2.7e-16 90.1 295 33.2
arahy.Tifrunner.gnm1.ann1.KTU7AY Arachis hypogaea HOM05D003715 ORTHO05D003958 4.5e-16 89.4 129 40.3
A02p04750 Brassica napus HOM05D003715 ORTHO05D003958 4.5e-16 89.4 288 29.2
THA.LOC104820776 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 4.5e-16 89.4 209 33.0
RcHm_v2.0_Chr3g0497011 Rosa chinensis HOM05D003715 ORTHO05D003958 1.0e-15 88.2 311 30.9
Phvul.001G111500 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 1.3e-15 87.8 306 29.7
BcaC03g13579 Brassica carinata HOM05D003715 ORTHO05D003958 2.9e-15 86.7 283 29.7
AT3G03870 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 3.8e-15 86.3 229 34.5
BcaB05g23302 Brassica carinata HOM05D003715 ORTHO05D003958 3.8e-15 86.3 292 30.5
A10p21370 Brassica napus HOM05D003715 ORTHO05D003958 3.8e-15 86.3 294 30.3
Sp6g26180 Schrenkiella parvula HOM05D003715 ORTHO05D003958 3.8e-15 86.3 294 29.3
CARHR077990 Cardamine hirsuta HOM05D003715 ORTHO05D003958 5.0e-15 85.9 184 40.2
CDE02G4343 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 6.5e-15 85.5 291 29.6
AL3G13760 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 8.5e-15 85.1 208 33.7
Cpa.g.sc51.130 Carica papaya HOM05D003715 ORTHO05D003958 8.5e-15 85.1 299 29.4
ATR0737G080 Amborella trichopoda HOM05D003715 ORTHO05D003958 1.5e-14 84.3 91 48.4
VMungo1383G2890 Vigna mungo HOM05D003715 ORTHO05D003958 1.9e-14 84.0 113 39.8
A03p08670 Brassica napus HOM05D003715 ORTHO05D003958 5.5e-14 82.4 291 29.9
Thhalv10021350m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 5.5e-14 82.4 218 33.9
C09p58840 Brassica napus HOM05D003715 ORTHO05D003958 7.2e-14 82.0 298 26.8
MBI04_g37012_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 7.2e-14 82.0 174 35.1
Nn7g35866 Nelumbo nucifera HOM05D003715 ORTHO05D003958 7.2e-14 82.0 271 30.6
BcaB01g05177 Brassica carinata HOM05D003715 ORTHO05D003958 9.4e-14 81.6 186 36.6
BcaC05g30247 Brassica carinata HOM05D003715 ORTHO05D003958 9.4e-14 81.6 177 34.5
C03p10110 Brassica napus HOM05D003715 ORTHO05D003958 9.4e-14 81.6 186 36.6
BolC9t58728H Brassica oleracea HOM05D003715 ORTHO05D003958 9.4e-14 81.6 284 26.4
BraA03t10190Z Brassica rapa HOM05D003715 ORTHO05D003958 9.4e-14 81.6 186 36.6
Solyc10g080670.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 1.2e-13 81.3 265 29.4
BcaB01g06399 Brassica carinata HOM05D003715 ORTHO05D003958 1.6e-13 80.9 283 28.6
BcaB08g36703 Brassica carinata HOM05D003715 ORTHO05D003958 1.6e-13 80.9 166 33.1
BraA10t44200Z Brassica rapa HOM05D003715 ORTHO05D003958 2.1e-13 80.5 282 27.3
A05p43520 Brassica napus HOM05D003715 ORTHO05D003958 2.7e-13 80.1 192 35.4
Sopen10g031210 Solanum pennellii HOM05D003715 ORTHO05D003958 3.6e-13 79.7 265 29.4
Aa31LG11G11470 Aethionema arabicum HOM05D003715 ORTHO05D003958 4.7e-13 79.3 192 30.7
BolC3t13497H Brassica oleracea HOM05D003715 ORTHO05D003958 6.1e-13 79.0 288 30.2
CSS0027479 Camellia sinensis var. sinensis HOM05D003715 ORTHO05D003958 6.1e-13 79.0 263 28.9
BcaNung05741 Brassica carinata HOM05D003715 ORTHO05D003958 8.0e-13 78.6 244 31.6
CARHR194940 Cardamine hirsuta HOM05D003715 ORTHO05D003958 8.0e-13 78.6 285 28.4
FAN26G1768 Fragaria x ananassa HOM05D003715 ORTHO05D003958 8.0e-13 78.6 292 29.8
BcaC05g29901 Brassica carinata HOM05D003715 ORTHO05D003958 1.0e-12 78.2 206 34.5
BolC5t34973H Brassica oleracea HOM05D003715 ORTHO05D003958 1.0e-12 78.2 206 34.5
Eucgr.K01502 Eucalyptus grandis HOM05D003715 ORTHO05D003958 1.0e-12 78.2 287 26.8
Carub.0003s0306 Capsella rubella HOM05D003715 ORTHO05D003958 1.8e-12 77.4 226 31.0
FAN23G0877 Fragaria x ananassa HOM05D003715 ORTHO05D003958 1.8e-12 77.4 290 29.7
Sp3g02840 Schrenkiella parvula HOM05D003715 ORTHO05D003958 2.3e-12 77.0 207 32.9
FvH4_1g28230 Fragaria vesca HOM05D003715 ORTHO05D003958 5.2e-12 75.9 296 29.4
PSO384G3057 Papaver somniferum HOM05D003715 ORTHO05D003958 5.2e-12 75.9 147 34.7
Aqoxy1G00472 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 6.8e-12 75.5 164 33.5
BolC1t05801H Brassica oleracea HOM05D003715 ORTHO05D003958 8.8e-12 75.1 152 38.8
CDE05G3048 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 8.8e-12 75.1 291 28.5
FAN28G3019 Fragaria x ananassa HOM05D003715 ORTHO05D003958 1.5e-11 74.3 295 29.5
arahy.Tifrunner.gnm1.ann1.FCYU2S Arachis hypogaea HOM05D003715 ORTHO05D003958 2.0e-11 73.9 157 34.4
BraA05t23092Z Brassica rapa HOM05D003715 ORTHO05D003958 2.0e-11 73.9 184 34.8
PGSC0003DMG400023700 Solanum tuberosum HOM05D003715 ORTHO05D003958 2.0e-11 73.9 264 28.8
BcaC05g30288 Brassica carinata HOM05D003715 ORTHO05D003958 3.7e-10 69.7 89 49.4
AUR62032043 Chenopodium quinoa HOM05D003715 ORTHO05D003958 3.7e-10 69.7 275 30.2
Duzib128G0041 Durio zibethinus HOM05D003715 ORTHO05D003958 3.7e-10 69.7 281 28.1
Os03g0806600 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 4.8e-10 69.3 108 38.9
Aa31LG5G14450 Aethionema arabicum HOM05D003715 ORTHO05D003958 6.3e-10 68.9 267 29.2
PSO782G0808 Papaver somniferum HOM05D003715 ORTHO05D003958 1.1e-09 68.2 135 36.3
THA.LOC104802870 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 2.7e-08 63.5 175 29.7
Ah.04g153150 Amaranthus hybridus HOM05D003715 ORTHO05D003958 5.9e-08 62.4 283 25.1
Peaxi162Scf00249g00717 Petunia axillaris HOM05D003715 ORTHO05D003958 1.0e-07 61.6 202 29.7
Zm00001eb302900 Zea mays HOM05D003715 ORTHO05D003958 1.0e-07 61.6 98 37.8
AUR62032710 Chenopodium quinoa HOM05D003715 ORTHO05D003958 2.5e-06 57.0 275 27.3


User provided reference genes

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