Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0053871 Helianthus annuus HOM05D004071 ORTHO05D004501 1.3e-27 125.6 60 100.0
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 1.4e-16 89.0 103 52.4
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 1.5e-15 85.5 103 50.5
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 9.2e-13 76.3 103 45.6
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 1.6e-12 75.5 103 44.7
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 1.6e-12 75.5 103 43.7
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 2.1e-12 75.1 103 42.7
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 3.5e-12 74.3 103 42.7
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 4.6e-12 73.9 103 42.7
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 6.0e-12 73.6 103 41.7
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 7.8e-12 73.2 103 42.7
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 1.0e-11 72.8 103 41.7
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 1.7e-11 72.0 103 41.7
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 2.3e-11 71.6 103 41.7
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 2.3e-11 71.6 103 41.7
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 2.3e-11 71.6 103 40.8
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 3.9e-11 70.9 103 39.8
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 3.9e-11 70.9 103 40.8
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 6.6e-11 70.1 103 40.8
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 6.6e-11 70.1 103 38.8
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 6.6e-11 70.1 104 41.3
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 8.6e-11 69.7 103 39.8
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 8.6e-11 69.7 103 39.8
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 1.1e-10 69.3 103 39.8
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 1.1e-10 69.3 103 41.7
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 1.1e-10 69.3 103 41.7
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 1.1e-10 69.3 103 40.8
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 1.9e-10 68.6 103 38.8
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 1.9e-10 68.6 103 39.8
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 2.5e-10 68.2 103 38.8
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.5e-10 68.2 103 39.8
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.5e-10 68.2 103 39.8
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 2.5e-10 68.2 103 39.8
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 2.5e-10 68.2 103 39.8
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 2.5e-10 68.2 103 40.8
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 2.5e-10 68.2 102 38.2
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 4.3e-10 67.4 103 37.9
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 4.3e-10 67.4 102 41.2
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.3e-10 67.4 103 40.8
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.3e-10 67.4 103 39.8
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 4.3e-10 67.4 103 39.8
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 4.3e-10 67.4 103 39.8
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 4.3e-10 67.4 103 39.8
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 5.6e-10 67.0 103 38.8
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.6e-10 67.0 103 40.8
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.6e-10 67.0 103 39.8
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 5.6e-10 67.0 103 39.8
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 5.6e-10 67.0 103 36.9
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 7.3e-10 66.6 103 37.9
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 7.3e-10 66.6 103 37.9
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 7.3e-10 66.6 103 38.8
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 7.3e-10 66.6 103 38.8
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 7.3e-10 66.6 103 38.8
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 7.3e-10 66.6 103 39.8
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 9.5e-10 66.2 103 40.8
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 9.5e-10 66.2 103 38.8
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 9.5e-10 66.2 103 38.8
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 9.5e-10 66.2 103 38.8
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 9.5e-10 66.2 105 38.1
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 1.2e-09 65.9 103 37.9
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.2e-09 65.9 103 39.8
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 1.2e-09 65.9 103 39.8
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.2e-09 65.9 103 39.8
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 1.2e-09 65.9 103 39.8
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 1.2e-09 65.9 103 39.8
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 2.1e-09 65.1 101 39.6
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 2.8e-09 64.7 101 40.6
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 2.8e-09 64.7 103 39.8
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 2.8e-09 64.7 101 39.6
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 2.8e-09 64.7 103 39.8
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 2.8e-09 64.7 103 38.8
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 3.6e-09 64.3 103 37.9
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 4.7e-09 63.9 101 39.6
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 4.7e-09 63.9 103 35.9
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 4.7e-09 63.9 101 39.6
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 6.2e-09 63.5 103 38.8
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 6.2e-09 63.5 101 39.6
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 1.1e-08 62.8 103 37.9
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 1.4e-08 62.4 103 36.9
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 1.4e-08 62.4 103 36.9
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 1.4e-08 62.4 103 38.8
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 1.4e-08 62.4 103 36.9
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 1.8e-08 62.0 103 36.9
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 2.3e-08 61.6 103 38.8
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 2.3e-08 61.6 103 36.9
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 2.3e-08 61.6 103 37.9
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 2.3e-08 61.6 103 37.9
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 3.1e-08 61.2 103 36.9
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 4.0e-08 60.8 101 37.6
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 4.0e-08 60.8 101 37.6
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 6.8e-08 60.1 103 36.9
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 8.9e-08 59.7 103 35.9
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 8.9e-08 59.7 103 36.9
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 1.2e-07 59.3 101 38.6
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.5e-07 58.9 102 36.3
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 2.0e-07 58.5 101 35.6
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 2.0e-07 58.5 103 36.9
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 4.4e-07 57.4 98 38.8
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 4.4e-07 57.4 103 33.0
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 5.8e-07 57.0 103 37.9
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 1.3e-06 55.8 103 35.9
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 2.9e-06 54.7 103 31.1
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 4.9e-06 53.9 103 35.0
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 8.4e-06 53.1 103 31.1


User provided reference genes

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