Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0053541 Helianthus annuus HOM05D007060 ORTHO05D009087 1.4e-281 972.2 481 100.0
ECA238G3502 Erigeron canadensis HOM05D007060 ORTHO05D009087 1.5e-185 653.3 400 76.8
Potri.008G018200 Populus trichocarpa HOM05D007060 ORTHO05D009087 2.8e-184 649.0 491 64.0
Lsat_1_v5_gn_2_105821 Lactuca sativa HOM05D007060 ORTHO05D009087 1.4e-183 646.7 400 76.8
Cc02_g09400 Coffea canephora HOM05D007060 ORTHO05D009087 5.8e-182 641.3 480 65.6
Manes.07G085000 Manihot esculenta HOM05D007060 ORTHO05D009087 9.8e-182 640.6 487 64.3
CiPaw.13G043400 Carya illinoinensis HOM05D007060 ORTHO05D009087 3.0e-178 629.0 495 61.4
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 3.9e-178 628.6 471 65.2
TWI63G0697 Tripterygium wilfordii HOM05D007060 ORTHO05D009087 1.5e-177 626.7 484 62.0
Prupe.4G266300 Prunus persica HOM05D007060 ORTHO05D009087 2.8e-176 622.5 492 62.0
MD03G1165900 Malus domestica HOM05D007060 ORTHO05D009087 4.7e-176 621.7 502 62.2
TAR623G0941 Trochodendron aralioides HOM05D007060 ORTHO05D009087 4.7e-176 621.7 501 60.7
CSS0031015 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.8e-175 619.8 474 64.3
CSS0040194 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.1e-175 619.0 474 63.9
CSS0035496 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 5.2e-175 618.2 472 64.0
CSS0035234 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.2e-174 617.1 492 62.6
CSS0040116 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.0e-174 616.3 472 63.8
CSS0037937 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.6e-174 615.9 472 63.3
CANSAT56G2168 Cannabis sativa HOM05D007060 ORTHO05D009087 2.6e-174 615.9 492 61.8
CSS0002387 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.4e-174 615.5 492 62.2
CSS0046160 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.4e-174 615.1 492 62.2
Gorai.N007800 Gossypium raimondii HOM05D007060 ORTHO05D009087 5.8e-174 614.8 478 63.4
CSS0028923 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.7e-173 613.2 492 62.2
CSS0037157 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.7e-173 613.2 492 62.0
CSS0005765 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.2e-173 612.8 501 61.5
Nn6g34700 Nelumbo nucifera HOM05D007060 ORTHO05D009087 3.7e-173 612.1 477 63.3
CSS0014623 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.9e-173 611.7 492 62.0
CSS0019796 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.9e-173 611.7 492 61.8
Thecc.10G116400 Theobroma cacao HOM05D007060 ORTHO05D009087 4.9e-173 611.7 478 62.8
Sabra08G0011800 Salix brachista HOM05D007060 ORTHO05D009087 1.6e-171 606.7 401 71.1
Solyc11g006560.3 Solanum lycopersicum HOM05D007060 ORTHO05D009087 2.7e-171 605.9 475 62.7
Oeu033276.1 Olea europaea HOM05D007060 ORTHO05D009087 3.5e-171 605.5 407 69.8
Medtr1g090540 Medicago truncatula HOM05D007060 ORTHO05D009087 3.9e-170 602.1 484 60.3
TPR.G37861 Trifolium pratense HOM05D007060 ORTHO05D009087 3.9e-170 602.1 489 60.5
Duzib106G1772 Durio zibethinus HOM05D007060 ORTHO05D009087 5.1e-170 601.7 472 62.3
CARHR085210 Cardamine hirsuta HOM05D007060 ORTHO05D009087 1.5e-169 600.1 469 62.7
Carub.0003s0986 Capsella rubella HOM05D007060 ORTHO05D009087 2.5e-169 599.4 470 62.8
Glyma.10G195800 Glycine max HOM05D007060 ORTHO05D009087 2.5e-169 599.4 490 61.0
QL04p047886 Quercus lobata HOM05D007060 ORTHO05D009087 7.3e-169 597.8 401 69.6
RcHm_v2.0_Chr1g0331951 Rosa chinensis HOM05D007060 ORTHO05D009087 7.3e-169 597.8 488 60.7
Aqoxy1G00669 Aquilegia oxysepala HOM05D007060 ORTHO05D009087 3.6e-168 595.5 491 60.1
CAN.G143.24 Capsicum annuum HOM05D007060 ORTHO05D009087 3.6e-168 595.5 397 70.8
Lj5g0018387 Lotus japonicus HOM05D007060 ORTHO05D009087 3.6e-168 595.5 477 61.2
AL3G22100 Arabidopsis lyrata HOM05D007060 ORTHO05D009087 6.2e-168 594.7 470 63.2
PGR142G1122 Punica granatum HOM05D007060 ORTHO05D009087 8.1e-168 594.3 485 59.2
Atru.chr12.1066 Acer truncatum HOM05D007060 ORTHO05D009087 1.1e-167 594.0 399 68.9
AT3G10630 Arabidopsis thaliana HOM05D007060 ORTHO05D009087 2.3e-167 592.8 467 62.3
VMungo0720G1293 Vigna mungo HOM05D007060 ORTHO05D009087 4.0e-167 592.0 462 62.6
Lj3P923T49 Lonicera japonica HOM05D007060 ORTHO05D009087 6.8e-167 591.3 401 69.6
Sp3g08940 Schrenkiella parvula HOM05D007060 ORTHO05D009087 6.8e-167 591.3 470 62.3
Sopen11g002500 Solanum pennellii HOM05D007060 ORTHO05D009087 8.9e-167 590.9 399 69.2
PGSC0003DMG400001998 Solanum tuberosum HOM05D007060 ORTHO05D009087 1.5e-166 590.1 472 62.1
GSVIVG01034635001 Vitis vinifera HOM05D007060 ORTHO05D009087 1.5e-166 590.1 394 69.5
Thhalv10020598m.g Eutrema salsugineum HOM05D007060 ORTHO05D009087 2.0e-166 589.7 468 62.6
BraA01t04232Z Brassica rapa HOM05D007060 ORTHO05D009087 3.4e-166 589.0 468 63.5
THA.LOC104816472 Tarenaya hassleriana HOM05D007060 ORTHO05D009087 3.4e-166 589.0 492 60.4
Nitab4.5_0001781g0140 Nicotiana tabacum HOM05D007060 ORTHO05D009087 5.8e-166 588.2 402 69.2
Psat6g172000 Pisum sativum HOM05D007060 ORTHO05D009087 5.8e-166 588.2 460 62.2
Migut.F00850 Erythranthe guttata HOM05D007060 ORTHO05D009087 1.3e-165 587.0 476 60.5
A01p41570 Brassica napus HOM05D007060 ORTHO05D009087 2.2e-165 586.3 465 62.8
CsaV3_5G035220 Cucumis sativus L. HOM05D007060 ORTHO05D009087 6.4e-165 584.7 471 61.6
MELO3C012336.2 Cucumis melo HOM05D007060 ORTHO05D009087 8.3e-165 584.3 471 61.6
Hma1.2p1_0457F.1_g156870 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 1.4e-164 583.6 400 69.0
MSTRG.9036 Avicennia marina HOM05D007060 ORTHO05D009087 2.7e-163 579.3 489 58.3
Nitab4.5_0007799g0060 Nicotiana tabacum HOM05D007060 ORTHO05D009087 1.0e-162 577.4 395 69.6
ClCG05G021920 Citrullus lanatus HOM05D007060 ORTHO05D009087 3.9e-162 575.5 484 60.1
Sed0007060 Sechium edule HOM05D007060 ORTHO05D009087 8.6e-162 574.3 487 59.5
Ca_10429_v3 Cicer arietinum L. HOM05D007060 ORTHO05D009087 1.1e-161 573.9 388 69.3
BolC1t05373H Brassica oleracea HOM05D007060 ORTHO05D009087 1.5e-161 573.5 408 66.7
COL.COLO4_07825 Corchorus olitorius HOM05D007060 ORTHO05D009087 1.9e-161 573.2 401 67.6
Phvul.007G138500 Phaseolus vulgaris HOM05D007060 ORTHO05D009087 3.6e-160 568.9 393 67.2
Cpa.g.sc54.25 Carica papaya HOM05D007060 ORTHO05D009087 4.7e-160 568.5 400 65.8
Peaxi162Scf00725g00056 Petunia axillaris HOM05D007060 ORTHO05D010136 1.4e-159 567.0 397 69.0
Dinv08415 Davidia involucrata HOM05D007060 ORTHO05D009087 6.8e-159 564.7 360 72.2
PGR142G0278 Punica granatum HOM05D007060 ORTHO05D009087 3.4e-158 562.4 494 56.9
Ciclev10015484m.g Citrus clementina HOM05D007060 ORTHO05D009087 2.2e-157 559.7 398 66.6
Gohir.D06G177400 Gossypium hirsutum HOM05D007060 ORTHO05D009087 4.6e-155 552.0 371 69.5
DCAR_005120 Daucus carota HOM05D007060 ORTHO05D009087 1.5e-153 547.0 367 69.8
Sopen11g002460 Solanum pennellii HOM05D007060 ORTHO05D009087 7.3e-153 544.7 362 70.2
Rhsim03G0096200 Rhododendron simsii HOM05D007060 ORTHO05D009087 1.1e-151 540.8 401 66.1
Os09g0296700 Oryza sativa ssp. japonica HOM05D007060 ORTHO05D009087 4.0e-151 538.9 439 60.4
unitig_46.g18644 Utricularia gibba HOM05D007060 ORTHO05D009087 4.0e-151 538.9 470 56.6
Zm00001eb309100 Zea mays HOM05D007060 ORTHO05D009087 9.9e-150 534.3 441 59.0
Sopen11g002480 Solanum pennellii HOM05D007060 ORTHO05D009087 1.1e-148 530.8 355 69.6
CDE06G1445 Ceratophyllum demersum HOM05D007060 ORTHO05D009087 7.8e-147 524.6 403 62.8
SEGI_33772 Sequoiadendron giganteum HOM05D007060 ORTHO05D009087 3.3e-145 519.2 407 60.9
Actinidia03837 Actinidia chinensis HOM05D007060 ORTHO05D009087 5.6e-145 518.5 347 70.3
Eucgr.G02680 Eucalyptus grandis HOM05D007060 ORTHO05D009087 1.2e-142 510.8 350 68.3
ATR0772G206 Amborella trichopoda HOM05D007060 ORTHO05D009087 3.2e-140 502.7 487 52.0
SalBow1G5690 Salvia bowleyana HOM05D007060 ORTHO05D009087 1.2e-139 500.7 460 55.7
BcaB04g21186 Brassica carinata HOM05D007060 ORTHO05D009087 7.4e-137 491.5 465 54.2
SMO203G0203 Selaginella moellendorffii HOM05D007060 ORTHO05D009087 6.7e-130 468.4 399 57.4
Lalb_Chr21g0312821 Lupinus albus HOM05D007060 ORTHO05D009087 1.2e-123 447.6 289 73.0
AagrBONN_evm.TU.Sc2ySwM_344.3615 Anthoceros agrestis HOM05D007060 ORTHO05D009087 1.3e-122 444.1 401 54.4
SHI22512 Sapria himalayana HOM05D007060 ORTHO05D009087 3.3e-105 386.3 348 55.7
Glyma.20G194300 Glycine max HOM05D007060 ORTHO05D009087 9.7e-105 384.8 323 59.4
Pp3c6_17860 Physcomitrium patens HOM05D007060 ORTHO05D009087 1.3e-104 384.4 399 49.4
CBR_g29369 Chara braunii HOM05D007060 ORTHO05D009087 5.3e-95 352.4 293 58.4
Hma1.2p1_0826F.1_g224930 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 1.8e-90 337.4 210 75.7
MCO11G427 Micromonas commoda HOM05D007060 ORTHO05D009087 1.0e-85 321.6 437 42.3
Cre02.g118801 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 4.5e-78 296.2 455 38.0
PRCOL_00001658 Prasinoderma coloniale HOM05D007060 ORTHO05D009087 1.2e-70 271.6 466 37.8
TAR625G0310 Trochodendron aralioides HOM05D007060 ORTHO05D009087 2.0e-57 227.6 288 42.7
FvH4_5g28400 Fragaria vesca HOM05D007060 ORTHO05D009087 8.6e-53 212.2 157 61.1
FAN24G3568 Fragaria x ananassa HOM05D007060 ORTHO05D009087 1.5e-49 201.4 212 50.5
Cre09.g386732 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 3.8e-40 170.2 315 33.7
HPP92_006362 Vanilla planifolia HOM05D007060 ORTHO05D009087 9.9e-33 145.6 120 55.8
FAN03G2415 Fragaria x ananassa HOM05D007060 ORTHO05D009087 1.6e-30 138.3 89 76.4
PRCOL_00006151 Prasinoderma coloniale HOM05D007060 ORTHO05D048979 3.5e-30 137.1 304 31.9
MCO05G161 Micromonas commoda HOM05D007060 ORTHO05D048979 9.9e-25 119.0 325 30.5
MBI01_g04536_MAGBIO Magnolia biondii HOM05D007060 ORTHO05D009087 2.1e-19 101.3 67 68.7
AL1G24060 Arabidopsis lyrata HOM05D007060 ORTHO05D023607 2.1e-14 84.7 59 64.4
CBR_g29367 Chara braunii HOM05D007060 ORTHO05D009087 1.5e-09 68.6 80 43.8
Sed0002007 Sechium edule HOM05D003378 ORTHO05D003942 9.3e-07 59.3 143 26.6
Sed0023271 Sechium edule HOM05D003378 ORTHO05D003942 2.1e-06 58.2 143 26.6


User provided reference genes

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