Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0052851 Helianthus annuus HOM05D003892 ORTHO05D004522 0.0e+00 1172.1 603 100.0
HanXRQChr13g0398781 Helianthus annuus HOM05D003892 ORTHO05D004522 7.0e-270 933.7 616 79.4
ECA233G3816 Erigeron canadensis HOM05D003892 ORTHO05D004522 5.6e-227 791.2 625 68.3
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 3.1e-201 705.7 632 64.9
Lsat_1_v5_gn_2_121661 Lactuca sativa HOM05D003892 ORTHO05D004522 5.7e-187 658.3 608 63.7
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 4.5e-176 622.1 645 55.8
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 3.8e-175 619.0 631 58.5
ECA238G3852 Erigeron canadensis HOM05D003892 ORTHO05D004522 3.5e-168 595.9 590 56.8
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 1.0e-167 594.3 646 55.0
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 6.6e-167 591.7 668 53.7
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 3.0e-164 582.8 649 54.2
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 3.5e-160 569.3 645 52.1
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 4.3e-158 562.4 649 53.6
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 6.8e-156 555.1 612 54.2
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 2.6e-155 553.1 646 52.2
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 2.6e-155 553.1 649 51.9
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 4.4e-155 552.4 645 49.8
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 6.4e-154 548.5 645 49.5
Potri.016G065600 Populus trichocarpa HOM05D003892 ORTHO05D004522 1.1e-153 547.7 620 53.2
Manes.08G037500 Manihot esculenta HOM05D003892 ORTHO05D004522 6.0e-152 542.0 645 51.9
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 8.6e-151 538.1 644 49.1
Potri.006G199200 Populus trichocarpa HOM05D003892 ORTHO05D004522 3.3e-150 536.2 613 53.5
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 5.6e-150 535.4 613 52.2
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 5.2e-148 528.9 612 51.6
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 5.2e-148 528.9 681 48.3
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 1.2e-147 527.7 647 49.9
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 3.4e-147 526.2 648 50.0
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 4.9e-146 522.3 621 49.1
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 6.4e-146 521.9 648 49.7
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 1.9e-145 520.4 671 48.4
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 4.1e-145 519.2 623 52.2
CANSAT64G1569 Cannabis sativa HOM05D003892 ORTHO05D004522 3.5e-144 516.2 610 51.5
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 3.0e-143 513.1 615 49.8
Duzib128G1914 Durio zibethinus HOM05D003892 ORTHO05D004522 3.3e-142 509.6 649 49.0
Dinv25081 Davidia involucrata HOM05D003892 ORTHO05D004522 4.3e-142 509.2 512 58.4
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.4e-140 504.2 648 49.1
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 3.1e-140 503.1 650 47.8
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 8.9e-140 501.5 648 48.6
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 4.4e-139 499.2 643 48.4
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 5.8e-139 498.8 643 48.4
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 7.6e-139 498.4 643 48.4
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 1.7e-138 497.3 633 49.6
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 2.9e-138 496.5 670 47.2
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 8.3e-138 495.0 641 48.4
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 1.9e-137 493.8 641 48.2
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 3.2e-137 493.0 641 49.8
Sed0022353 Sechium edule HOM05D003892 ORTHO05D004522 3.2e-137 493.0 615 49.8
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 4.1e-137 492.7 637 49.3
Glyma.19G202400 Glycine max HOM05D003892 ORTHO05D004522 7.1e-137 491.9 635 49.6
Eucgr.A02543 Eucalyptus grandis HOM05D003892 ORTHO05D004522 9.2e-137 491.5 611 47.5
MD14G1044900 Malus domestica HOM05D003892 ORTHO05D004522 3.5e-136 489.6 616 47.7
Glyma.03G205000 Glycine max HOM05D003892 ORTHO05D004522 1.3e-135 487.6 635 49.6
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 3.0e-135 486.5 642 48.4
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 3.9e-135 486.1 625 50.6
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 3.3e-134 483.0 653 46.7
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 4.3e-134 482.6 642 48.1
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 4.3e-134 482.6 598 49.5
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 4.3e-134 482.6 650 49.4
arahy.Tifrunner.gnm1.ann1.H4389H Arachis hypogaea HOM05D003892 ORTHO05D004522 9.6e-134 481.5 671 47.5
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 1.6e-133 480.7 610 48.5
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 3.6e-133 479.6 620 48.5
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 6.2e-133 478.8 636 48.1
PSO832G2838 Papaver somniferum HOM05D003892 ORTHO05D004522 6.2e-133 478.8 651 46.5
THA.LOC104824220 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 1.8e-132 477.2 611 48.4
Ca_09081_v3 Cicer arietinum L. HOM05D003892 ORTHO05D004522 3.1e-132 476.5 627 48.8
ClCG10G017850 Citrullus lanatus HOM05D003892 ORTHO05D004522 6.8e-132 475.3 628 48.4
THA.LOC104825242 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 1.2e-131 474.6 629 47.5
TPR.G34451 Trifolium pratense HOM05D003892 ORTHO05D004522 1.5e-131 474.2 621 49.0
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 4.4e-131 472.6 655 47.8
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 5.8e-131 472.2 626 48.4
PGR004G2391 Punica granatum HOM05D003892 ORTHO05D004522 5.8e-131 472.2 602 47.3
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 7.6e-131 471.9 610 49.2
Sabra06G0153100 Salix brachista HOM05D003892 ORTHO05D004522 8.4e-130 468.4 610 49.3
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 4.2e-129 466.1 625 47.2
CsaV3_3G038440 Cucumis sativus L. HOM05D003892 ORTHO05D004522 1.2e-128 464.5 612 48.2
MELO3C009588.2 Cucumis melo HOM05D003892 ORTHO05D004522 1.6e-128 464.2 613 48.1
Migut.J00728 Erythranthe guttata HOM05D003892 ORTHO05D004522 2.1e-128 463.8 635 47.6
Thhalv10010226m.g Eutrema salsugineum HOM05D003892 ORTHO05D004522 6.0e-128 462.2 607 46.3
VMungo1383G0340 Vigna mungo HOM05D003892 ORTHO05D004522 7.8e-128 461.8 596 49.3
AL5G35820 Arabidopsis lyrata HOM05D003892 ORTHO05D004522 3.9e-127 459.5 623 45.9
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 3.9e-127 459.5 646 45.5
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 5.1e-127 459.1 654 45.6
Peaxi162Scf00210g00093 Petunia axillaris HOM05D003892 ORTHO05D004522 8.7e-127 458.4 646 45.4
Sabra16G0067100 Salix brachista HOM05D003892 ORTHO05D004522 8.7e-127 458.4 620 47.6
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.5e-126 457.6 641 45.4
Aa31LG11G3840 Aethionema arabicum HOM05D003892 ORTHO05D004522 2.5e-126 456.8 608 46.2
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 5.6e-126 455.7 623 47.8
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 7.3e-126 455.3 639 47.7
AT3G54750 Arabidopsis thaliana HOM05D003892 ORTHO05D004522 7.3e-126 455.3 607 46.1
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.3e-125 454.5 645 47.0
Phvul.001G198500 Phaseolus vulgaris HOM05D003892 ORTHO05D004522 1.6e-125 454.1 600 47.7
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 1.6e-125 454.1 635 46.0
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 4.8e-125 452.6 599 48.4
Nitab4.5_0003430g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.4e-124 451.1 639 46.2
Carub.0005s2135 Capsella rubella HOM05D003892 ORTHO05D004522 2.4e-124 450.3 617 45.2
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.2e-123 448.0 641 44.8
Sp5g07700 Schrenkiella parvula HOM05D003892 ORTHO05D004522 2.0e-123 447.2 624 44.6
A09p47680 Brassica napus HOM05D003892 ORTHO05D004522 2.6e-123 446.8 619 44.9
BraA09t40224Z Brassica rapa HOM05D003892 ORTHO05D004522 1.7e-122 444.1 619 44.7
CARHR164690 Cardamine hirsuta HOM05D003892 ORTHO05D004522 2.2e-122 443.7 621 44.6
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 2.9e-122 443.4 636 46.2
BcaB01g00163 Brassica carinata HOM05D003892 ORTHO05D004522 4.2e-121 439.5 643 43.9
BolC8t50600H Brassica oleracea HOM05D003892 ORTHO05D004522 7.1e-121 438.7 616 44.5
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 2.1e-120 437.2 677 43.1
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 2.7e-120 436.8 673 43.4
BcaC07g39789 Brassica carinata HOM05D003892 ORTHO05D004522 6.0e-120 435.6 616 44.6
BcaB02g08458 Brassica carinata HOM05D003892 ORTHO05D004522 1.7e-119 434.1 617 44.7
arahy.Tifrunner.gnm1.ann1.P5VIE6 Arachis hypogaea HOM05D003892 ORTHO05D004522 3.9e-119 433.0 636 45.9
C08p29890 Brassica napus HOM05D003892 ORTHO05D004522 8.7e-119 431.8 618 43.9
A04p05070 Brassica napus HOM05D003892 ORTHO05D004522 3.6e-117 426.4 607 44.6
Dinv11899 Davidia involucrata HOM05D003892 ORTHO05D004522 1.8e-116 424.1 417 59.0
BraA04t16218Z Brassica rapa HOM05D003892 ORTHO05D004522 3.1e-116 423.3 607 44.2
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 2.6e-115 420.2 656 45.4
BcaC02g09701 Brassica carinata HOM05D003892 ORTHO05D004522 2.9e-114 416.8 615 44.1
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 2.9e-114 416.8 615 43.9
TWI81G0594 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 2.9e-114 416.8 514 50.0
TAR636G2427 Trochodendron aralioides HOM05D003892 ORTHO05D004522 8.1e-109 398.7 397 57.2
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 1.4e-108 397.9 573 45.2
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 4.0e-108 396.4 627 43.5
HPP92_013933 Vanilla planifolia HOM05D003892 ORTHO05D004522 4.5e-107 392.9 618 41.1
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 1.2e-104 384.8 617 42.1
Sed0022528 Sechium edule HOM05D003892 ORTHO05D004522 4.6e-104 382.9 615 42.1
Aa31LG2G20030 Aethionema arabicum HOM05D003892 ORTHO05D004522 4.8e-101 372.9 544 45.2
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 1.7e-98 364.4 618 42.1
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 2.3e-95 354.0 545 43.3
Zm00001eb032200 Zea mays HOM05D003892 ORTHO05D004522 4.3e-94 349.7 607 40.7
CSS0004478 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 7.7e-91 339.0 389 52.7
Medtr7g029625 Medicago truncatula HOM05D003892 ORTHO05D004522 1.1e-86 325.1 589 40.7
MBI11_g33439_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 2.0e-86 324.3 339 56.0
Nitab4.5_0000300g0030 Nicotiana tabacum HOM05D003892 ORTHO05D004522 2.0e-83 314.3 488 44.3
GSVIVG01020969001 Vitis vinifera HOM05D003892 ORTHO05D004522 2.6e-83 313.9 378 51.3
Gohir.A04G055942 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.3e-82 311.6 324 54.9
Actinidia37779 Actinidia chinensis HOM05D003892 ORTHO05D004522 3.3e-78 297.0 251 62.9
vmacro07513 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 7.7e-67 259.2 397 44.8
Sed0005279 Sechium edule HOM05D000521 ORTHO05D004522 1.7e-66 258.1 379 45.6
Pp3c26_8020 Physcomitrium patens HOM05D003892 ORTHO05D004522 7.5e-62 242.7 685 31.1
Pp3c4_31220 Physcomitrium patens HOM05D003892 ORTHO05D004522 2.2e-58 231.1 443 33.9
unitig_749.g14208 Utricularia gibba HOM05D003892 ORTHO05D004522 3.8e-58 230.3 232 52.6
arahy.Tifrunner.gnm1.ann1.75SLRD Arachis hypogaea HOM05D003892 ORTHO05D004522 1.5e-57 228.4 247 55.1
SMO351G0585 Selaginella moellendorffii HOM05D003892 ORTHO05D004522 2.5e-57 227.6 601 32.6
Mapoly0011s0047 Marchantia polymorpha HOM05D003892 ORTHO05D004522 4.2e-57 226.9 566 31.8
unitig_26.g9151 Utricularia gibba HOM05D003892 ORTHO05D004522 2.1e-56 224.6 243 49.8
SHI28320 Sapria himalayana HOM05D003892 ORTHO05D004522 4.7e-56 223.4 565 32.7
AagrBONN_evm.TU.Sc2ySwM_228.3493 Anthoceros agrestis HOM05D003892 ORTHO05D004522 5.2e-55 219.9 440 33.2
Gohir.D07G211433 Gossypium hirsutum HOM05D003892 ORTHO05D004522 8.3e-53 212.6 411 39.4
Cfa017831 Carpinus fangiana HOM05D003892 ORTHO05D004522 2.3e-47 194.5 205 53.2
Nitab4.5_0000429g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.7e-45 188.3 324 39.8
vmacro07512 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 1.5e-41 175.3 262 46.6
CSS0016552 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 3.4e-38 164.1 177 54.2
GSVIVG01020973001 Vitis vinifera HOM05D003892 ORTHO05D004522 2.2e-37 161.4 221 44.8
Gohir.A04G055921 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.0e-35 154.8 276 42.0
CBR_g20103 Chara braunii HOM05D003892 ORTHO05D004522 2.1e-32 144.8 356 31.5
HPP92_012152 Vanilla planifolia HOM05D003892 ORTHO05D004522 2.2e-29 134.8 133 54.1
GSVIVG01020966001 Vitis vinifera HOM05D003892 ORTHO05D004522 3.7e-29 134.0 95 73.7
arahy.Tifrunner.gnm1.ann1.R2HNIM Arachis hypogaea HOM05D003892 ORTHO05D004522 4.9e-29 133.7 275 36.0
TAR636G1189 Trochodendron aralioides HOM05D003892 ORTHO05D004522 7.1e-28 129.8 210 45.2
Nitab4.5_0003430g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 7.8e-27 126.3 218 39.9
Aqoxy2G02169 Aquilegia oxysepala HOM05D001785 ORTHO05D001933 1.7e-26 125.2 274 38.3
Actinidia37778 Actinidia chinensis HOM05D003892 ORTHO05D004522 1.5e-25 122.1 258 38.0
arahy.Tifrunner.gnm1.ann1.84GXZP Arachis hypogaea HOM05D003892 ORTHO05D004522 9.5e-25 119.4 263 36.5
arahy.Tifrunner.gnm1.ann1.C1NY7P Arachis hypogaea HOM05D003892 ORTHO05D004522 1.2e-24 119.0 260 36.2
SEGI_25684 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 1.3e-18 99.0 274 34.3
Cre03.g197600 Chlamydomonas reinhardtii HOM05D003892 ORTHO05D004522 1.1e-17 95.9 300 29.7
arahy.Tifrunner.gnm1.ann1.U7JCXR Arachis hypogaea HOM05D003892 ORTHO05D004522 2.1e-11 75.1 180 33.9
SEGI_30208 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 3.5e-11 74.3 70 51.4
arahy.Tifrunner.gnm1.ann1.Z2YKN3 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.0e-10 72.8 177 35.6
Sabra17G0067200 Salix brachista HOM05D003892 ORTHO05D004522 1.5e-09 68.9 112 41.1
ATR1154G016 Amborella trichopoda HOM05D003892 ORTHO05D004522 9.6e-09 66.2 107 39.3
Nitab4.5_0000123g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.3e-08 65.9 109 44.0
Glyma.10G214400 Glycine max HOM05D003892 ORTHO05D004522 3.4e-06 57.8 93 47.3


User provided reference genes

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