Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0052471 Helianthus annuus HOM05D003927 ORTHO05D022820 1.7e-38 162.2 82 100.0
HanXRQChr08g0234841 Helianthus annuus HOM05D003927 ORTHO05D022820 9.6e-21 103.2 51 96.1
HanXRQChr14g0440241 Helianthus annuus HOM05D003927 ORTHO05D004905 5.3e-19 97.4 50 92.0
ECA238G4411 Erigeron canadensis HOM05D003927 ORTHO05D004905 2.9e-17 91.7 50 86.0
Lsat_1_v5_gn_2_61101 Lactuca sativa HOM05D003927 ORTHO05D004905 1.4e-16 89.4 61 72.1
QL11p013470 Quercus lobata HOM05D003927 ORTHO05D004905 1.4e-16 89.4 56 76.8
Rhsim13G0129600 Rhododendron simsii HOM05D003927 ORTHO05D004905 1.9e-16 89.0 64 70.3
DCAR_003771 Daucus carota HOM05D003927 ORTHO05D004905 2.5e-16 88.6 56 76.8
HanXRQChr15g0483481 Helianthus annuus HOM05D003927 ORTHO05D004905 2.5e-16 88.6 50 80.0
Glyma.05G132100 Glycine max HOM05D003927 ORTHO05D004905 3.2e-16 88.2 56 76.8
Manes.03G074000 Manihot esculenta HOM05D003927 ORTHO05D004905 3.2e-16 88.2 56 76.8
Cc00_g22880 Coffea canephora HOM05D003927 ORTHO05D004905 4.2e-16 87.8 50 78.0
CiPaw.09G074500 Carya illinoinensis HOM05D003927 ORTHO05D004905 7.1e-16 87.0 50 82.0
Potri.003G074700 Populus trichocarpa HOM05D003927 ORTHO05D004905 7.1e-16 87.0 56 73.2
Sc24g0002980 Simmondsia chinensis HOM05D003927 ORTHO05D004905 7.1e-16 87.0 56 73.2
CANSAT35G1049 Cannabis sativa HOM05D003927 ORTHO05D004905 9.3e-16 86.7 50 82.0
Phvul.002G190700 Phaseolus vulgaris HOM05D003927 ORTHO05D004905 9.3e-16 86.7 56 73.2
Dinv10533 Davidia involucrata HOM05D003927 ORTHO05D004905 1.2e-15 86.3 56 75.0
GSVIVG01006086001 Vitis vinifera HOM05D003927 ORTHO05D004905 1.2e-15 86.3 60 68.3
Actinidia22422 Actinidia chinensis HOM05D003927 ORTHO05D004905 1.6e-15 85.9 50 80.0
VMungo0251G3294 Vigna mungo HOM05D003927 ORTHO05D004905 1.6e-15 85.9 56 75.0
RcHm_v2.0_Chr5g0020631 Rosa chinensis HOM05D003927 ORTHO05D004905 2.1e-15 85.5 56 73.2
arahy.Tifrunner.gnm1.ann1.QMDN7F Arachis hypogaea HOM05D003927 ORTHO05D004905 2.7e-15 85.1 56 73.2
arahy.Tifrunner.gnm1.ann1.YAS9I4 Arachis hypogaea HOM05D003927 ORTHO05D004905 2.7e-15 85.1 56 73.2
CSS0033159 Camellia sinensis var. sinensis HOM05D003927 ORTHO05D004905 2.7e-15 85.1 50 76.0
CAN.G149.2 Capsicum annuum HOM05D003927 ORTHO05D004905 2.7e-15 85.1 50 78.0
Haze_06142 Corylus avellana HOM05D003927 ORTHO05D004905 2.7e-15 85.1 56 75.0
Eucgr.E04308 Eucalyptus grandis HOM05D003927 ORTHO05D004905 2.7e-15 85.1 56 73.2
Solyc02g068530.4 Solanum lycopersicum HOM05D003927 ORTHO05D004905 2.7e-15 85.1 50 78.0
Sopen02g017670 Solanum pennellii HOM05D003927 ORTHO05D004905 2.7e-15 85.1 50 78.0
Dinv29312 Davidia involucrata HOM05D003927 ORTHO05D004905 3.5e-15 84.7 50 78.0
Lj4g0018518 Lotus japonicus HOM05D003927 ORTHO05D004905 3.5e-15 84.7 56 73.2
Cfa000676 Carpinus fangiana HOM05D003927 ORTHO05D004905 4.6e-15 84.3 50 80.0
GSVIVG01012124001 Vitis vinifera HOM05D003927 ORTHO05D004905 4.6e-15 84.3 56 71.4
ClCG01G025630 Citrullus lanatus HOM05D003927 ORTHO05D004905 6.0e-15 84.0 56 71.4
MELO3C007022.2 Cucumis melo HOM05D003927 ORTHO05D004905 6.0e-15 84.0 56 71.4
CsaV3_6G052860 Cucumis sativus L. HOM05D003927 ORTHO05D004905 6.0e-15 84.0 56 71.4
Duzib248G0257 Durio zibethinus HOM05D003927 ORTHO05D004905 6.0e-15 84.0 56 69.6
Lalb_Chr07g0188401 Lupinus albus HOM05D003927 ORTHO05D004905 6.0e-15 84.0 56 73.2
Oeu058944.1 Olea europaea HOM05D003927 ORTHO05D004905 6.0e-15 84.0 56 73.2
SalBow8G3138 Salvia bowleyana HOM05D003927 ORTHO05D004905 6.0e-15 84.0 49 81.6
Sed0013384 Sechium edule HOM05D003927 ORTHO05D004905 6.0e-15 84.0 56 71.4
PGSC0003DMG400010448 Solanum tuberosum HOM05D003927 ORTHO05D004905 6.0e-15 84.0 50 76.0
FvH4_3g12660 Fragaria vesca HOM05D003927 ORTHO05D004905 7.9e-15 83.6 56 73.2
FAN16G1436 Fragaria x ananassa HOM05D003927 ORTHO05D004905 7.9e-15 83.6 56 73.2
FAN25G3197 Fragaria x ananassa HOM05D003927 ORTHO05D004905 7.9e-15 83.6 56 73.2
Potri.001G159700 Populus trichocarpa HOM05D003927 ORTHO05D004905 7.9e-15 83.6 56 69.6
Sabra01G0132300 Salix brachista HOM05D003927 ORTHO05D004905 7.9e-15 83.6 56 69.6
Thecc.02G005900 Theobroma cacao HOM05D003927 ORTHO05D004905 7.9e-15 83.6 56 69.6
TPR.G2935 Trifolium pratense HOM05D003927 ORTHO05D004905 7.9e-15 83.6 56 73.2
Ciclev10014997m.g Citrus clementina HOM05D003927 ORTHO05D004905 1.0e-14 83.2 56 69.6
Duzib132G1257 Durio zibethinus HOM05D003927 ORTHO05D004905 1.0e-14 83.2 56 69.6
Gohir.D12G047200 Gossypium hirsutum HOM05D003927 ORTHO05D004905 1.0e-14 83.2 56 69.6
Gorai.008G049800 Gossypium raimondii HOM05D003927 ORTHO05D004905 1.0e-14 83.2 56 69.6
Lj2A344G38 Lonicera japonica HOM05D003927 ORTHO05D004905 1.0e-14 83.2 56 71.4
MD10G1229400 Malus domestica HOM05D003927 ORTHO05D004905 1.0e-14 83.2 56 71.4
Prupe.4G115400 Prunus persica HOM05D003927 ORTHO05D004905 1.0e-14 83.2 56 71.4
Glyma.08G086700 Glycine max HOM05D003927 ORTHO05D004905 1.3e-14 82.8 56 75.0
Hma1.2p1_0510F.1_g168820 Hydrangea macrophylla HOM05D003927 ORTHO05D004905 1.3e-14 82.8 56 73.2
Medtr4g094668 Medicago truncatula HOM05D003927 ORTHO05D004905 1.3e-14 82.8 56 71.4
Peaxi162Scf00199g00517 Petunia axillaris HOM05D003927 ORTHO05D004905 1.3e-14 82.8 50 74.0
Ah.08g210510 Amaranthus hybridus HOM05D003927 ORTHO05D004905 1.8e-14 82.4 56 69.6
COL.COLO4_17634 Corchorus olitorius HOM05D003927 ORTHO05D004905 1.8e-14 82.4 56 69.6
MSTRG.7601 Avicennia marina HOM05D003927 ORTHO05D004905 2.3e-14 82.0 50 72.0
Nn7g38278 Nelumbo nucifera HOM05D003927 ORTHO05D004905 2.3e-14 82.0 56 69.6
Psat7g088440 Pisum sativum HOM05D003927 ORTHO05D004905 2.3e-14 82.0 56 71.4
MD05G1248900 Malus domestica HOM05D003927 ORTHO05D004905 3.0e-14 81.6 56 71.4
A09p35130 Brassica napus HOM05D003927 ORTHO05D004905 3.9e-14 81.3 56 67.9
TAR624G0604 Trochodendron aralioides HOM05D003927 ORTHO05D004905 3.9e-14 81.3 56 69.6
Ca_18249_v3 Cicer arietinum L. HOM05D003927 ORTHO05D004905 5.1e-14 80.9 56 69.6
THA.LOC104814353 Tarenaya hassleriana HOM05D003927 ORTHO05D004905 5.1e-14 80.9 56 67.9
Cpa.g.sc30.136 Carica papaya HOM05D003927 ORTHO05D004905 6.7e-14 80.5 56 67.9
SGA_v2.0_scaffold175G39352 Striga asiatica HOM05D003927 ORTHO05D004905 6.7e-14 80.5 50 74.0
SGA_v2.0_scaffold298G47698 Striga asiatica HOM05D003927 ORTHO05D004905 6.7e-14 80.5 50 72.0
TAR628G0742 Trochodendron aralioides HOM05D003927 ORTHO05D004905 6.7e-14 80.5 56 67.9
AL4G31040 Arabidopsis lyrata HOM05D003927 ORTHO05D004905 8.7e-14 80.1 56 69.6
AT2G35020 Arabidopsis thaliana HOM05D003927 ORTHO05D004905 8.7e-14 80.1 56 69.6
CARHR030580 Cardamine hirsuta HOM05D003927 ORTHO05D004905 8.7e-14 80.1 56 67.9
Gohir.A12G048400 Gossypium hirsutum HOM05D003927 ORTHO05D004905 8.7e-14 80.1 56 66.1
CANSAT64G2986 Cannabis sativa HOM05D003927 ORTHO05D004905 1.1e-13 79.7 56 66.1
CDE12G0287 Ceratophyllum demersum HOM05D003927 ORTHO05D004905 1.1e-13 79.7 73 53.4
TWI15G0787 Tripterygium wilfordii HOM05D003927 ORTHO05D004905 1.1e-13 79.7 56 66.1
TWI38G0647 Tripterygium wilfordii HOM05D003927 ORTHO05D004905 1.1e-13 79.7 56 67.9
Thhalv10016553m.g Eutrema salsugineum HOM05D003927 ORTHO05D004905 1.5e-13 79.3 71 63.4
Gorai.005G268300 Gossypium raimondii HOM05D003927 ORTHO05D004905 1.5e-13 79.3 56 62.5
Lj1C1147G9 Lonicera japonica HOM05D003927 ORTHO05D004905 1.5e-13 79.3 67 59.7
Sabra03G0045400 Salix brachista HOM05D003927 ORTHO05D004905 1.5e-13 79.3 56 64.3
Aa31LG9G16190 Aethionema arabicum HOM05D003927 ORTHO05D004905 1.9e-13 79.0 56 67.9
AL1G45460 Arabidopsis lyrata HOM05D003927 ORTHO05D004905 1.9e-13 79.0 56 66.1
AT1G31070 Arabidopsis thaliana HOM05D003927 ORTHO05D004905 1.9e-13 79.0 56 66.1
BcaB04g18183 Brassica carinata HOM05D003927 ORTHO05D004905 1.9e-13 79.0 56 66.1
BcaC05g27140 Brassica carinata HOM05D003927 ORTHO05D004905 1.9e-13 79.0 56 66.1
C05p30260 Brassica napus HOM05D003927 ORTHO05D004905 1.9e-13 79.0 56 66.1
BolC5t31766H Brassica oleracea HOM05D003927 ORTHO05D004905 1.9e-13 79.0 56 66.1
BraA09t39043Z Brassica rapa HOM05D003927 ORTHO05D004905 1.9e-13 79.0 56 66.1
Carub.0001s2946 Capsella rubella HOM05D003927 ORTHO05D004905 1.9e-13 79.0 56 66.1
Thhalv10007394m.g Eutrema salsugineum HOM05D003927 ORTHO05D004905 1.9e-13 79.0 56 66.1
Sp1g26910 Schrenkiella parvula HOM05D003927 ORTHO05D004905 1.9e-13 79.0 56 66.1
BcaC02g11582 Brassica carinata HOM05D003927 ORTHO05D004905 2.5e-13 78.6 56 69.6
C04p13780 Brassica napus HOM05D003927 ORTHO05D004905 2.5e-13 78.6 56 69.6
BolC4t22968H Brassica oleracea HOM05D003927 ORTHO05D004905 2.5e-13 78.6 56 69.6
PGR042G2298 Punica granatum HOM05D003927 ORTHO05D004905 2.5e-13 78.6 50 74.0
TAR625G0767 Trochodendron aralioides HOM05D003927 ORTHO05D004905 2.5e-13 78.6 56 67.9
TAR626G1704 Trochodendron aralioides HOM05D003927 ORTHO05D004905 2.5e-13 78.6 56 67.9
Zm00001eb430780 Zea mays HOM05D003927 ORTHO05D004905 2.5e-13 78.6 71 57.7
Hund12931 Selenicereus undatus HOM05D003927 ORTHO05D004905 3.3e-13 78.2 56 64.3
Atru.chr10.419 Acer truncatum HOM05D003927 ORTHO05D004905 4.3e-13 77.8 53 67.9
ATR0763G183 Amborella trichopoda HOM05D003927 ORTHO05D004905 4.3e-13 77.8 56 64.3
EL10Ac7g16905 Beta vulgaris HOM05D003927 ORTHO05D004905 4.3e-13 77.8 56 64.3
A08p10790 Brassica napus HOM05D003927 ORTHO05D004905 4.3e-13 77.8 56 64.3
BraA08t33076Z Brassica rapa HOM05D003927 ORTHO05D004905 4.3e-13 77.8 56 64.3
Carub.0004s1671 Capsella rubella HOM05D003927 ORTHO05D004905 4.3e-13 77.8 56 66.1
Os08g0206900 Oryza sativa ssp. japonica HOM05D003927 ORTHO05D004905 4.3e-13 77.8 56 66.1
BcaB02g09488 Brassica carinata HOM05D003927 ORTHO05D004905 5.7e-13 77.4 56 67.9
BcaB07g32771 Brassica carinata HOM05D003927 ORTHO05D004905 5.7e-13 77.4 56 66.1
BcaC07g37780 Brassica carinata HOM05D003927 ORTHO05D004905 5.7e-13 77.4 56 64.3
BolC8t48168H Brassica oleracea HOM05D003927 ORTHO05D004905 5.7e-13 77.4 56 64.3
CDE01G0678 Ceratophyllum demersum HOM05D000154 ORTHO05D004905 5.7e-13 77.4 56 62.5
AUR62006193 Chenopodium quinoa HOM05D003927 ORTHO05D004905 5.7e-13 77.4 50 72.0
HPP92_026365 Vanilla planifolia HOM05D003927 ORTHO05D004905 7.4e-13 77.0 57 63.2
Sp4g17300 Schrenkiella parvula HOM05D003927 ORTHO05D004905 9.6e-13 76.6 56 67.9
Zm00001eb070940 Zea mays HOM05D003927 ORTHO05D004905 9.6e-13 76.6 71 56.3
A05p10690 Brassica napus HOM05D003927 ORTHO05D004905 1.3e-12 76.3 50 72.0
BraA05t20009Z Brassica rapa HOM05D003927 ORTHO05D004905 1.3e-12 76.3 50 72.0
CARHR129180 Cardamine hirsuta HOM05D003927 ORTHO05D004905 1.6e-12 75.9 56 67.9
HPP92_016424 Vanilla planifolia HOM05D003927 ORTHO05D004905 1.6e-12 75.9 50 68.0
Aa31LG2G15040 Aethionema arabicum HOM05D003927 ORTHO05D004905 2.1e-12 75.5 56 62.5
Migut.M01998 Erythranthe guttata HOM05D003927 ORTHO05D004905 2.8e-12 75.1 50 72.0
PSO675G6709 Papaver somniferum HOM05D003927 ORTHO05D004905 2.8e-12 75.1 56 62.5
AUR62037029 Chenopodium quinoa HOM05D003927 ORTHO05D004905 3.7e-12 74.7 48 72.9
VMungo1309G2465 Vigna mungo HOM05D003927 ORTHO05D022820 3.7e-12 74.7 62 64.5
PSO541G2426 Papaver somniferum HOM05D003927 ORTHO05D004905 1.1e-11 73.2 56 60.7
Aqoxy3G04338 Aquilegia oxysepala HOM05D003927 ORTHO05D004905 2.4e-11 72.0 50 68.0
Zm00001eb413790 Zea mays HOM05D003927 ORTHO05D004905 2.4e-11 72.0 56 58.9
SEGI_28054 Sequoiadendron giganteum HOM05D003927 ORTHO05D022820 6.9e-11 70.5 47 68.1
THA.LOC104798559 Tarenaya hassleriana HOM05D003927 ORTHO05D004905 2.6e-10 68.6 63 57.1
Zm00001eb018150 Zea mays HOM05D003927 ORTHO05D001645 4.5e-10 67.8 45 62.2
unitig_748.g7494 Utricularia gibba HOM05D003927 ORTHO05D004905 1.0e-09 66.6 55 60.0
SHI20747 Sapria himalayana HOM05D003927 ORTHO05D004905 2.2e-09 65.5 45 64.4
SMO351G0243 Selaginella moellendorffii HOM05D003927 ORTHO05D004905 1.1e-08 63.2 43 62.8
Gohir.D02G239900 Gossypium hirsutum HOM05D003927 ORTHO05D004905 5.5e-08 60.8 37 67.6
AagrBONN_evm.TU.Sc2ySwM_362.1916 Anthoceros agrestis HOM05D003927 ORTHO05D004905 1.2e-07 59.7 44 61.4
Mapoly0089s0037 Marchantia polymorpha HOM05D003927 ORTHO05D004905 7.9e-07 57.0 44 56.8
Zm00001eb346020 Zea mays HOM05D001403 ORTHO05D001313 3.0e-06 55.1 38 55.3
Gohir.A03G217900 Gossypium hirsutum HOM05D003927 ORTHO05D004905 3.9e-06 54.7 29 79.3


User provided reference genes

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