Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 1.6e-145 520.0 389 100.0
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 4.7e-49 199.5 406 41.9
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 2.2e-38 164.1 383 38.1
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 6.6e-27 125.9 134 57.5
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 1.1e-26 125.2 401 34.9
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 1.2e-25 121.7 416 29.1
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 2.1e-25 120.9 133 56.4
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 1.0e-24 118.6 131 55.0
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 2.3e-24 117.5 137 51.1
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 3.1e-24 117.1 127 53.5
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 4.0e-24 116.7 141 53.2
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 8.9e-24 115.5 426 31.5
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 8.9e-24 115.5 144 50.7
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 4.4e-23 113.2 137 52.6
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 4.4e-23 113.2 137 51.1
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 9.8e-23 112.1 134 53.7
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 1.3e-22 111.7 136 53.7
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 1.7e-22 111.3 127 52.8
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 2.2e-22 110.9 130 54.6
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 2.2e-22 110.9 75 80.0
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 2.2e-22 110.9 135 51.9
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 3.7e-22 110.2 134 53.7
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 3.7e-22 110.2 398 29.9
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 3.7e-22 110.2 138 50.0
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 3.7e-22 110.2 122 57.4
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 3.7e-22 110.2 122 57.4
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 8.3e-22 109.0 143 49.7
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 8.3e-22 109.0 143 49.7
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 8.3e-22 109.0 143 49.7
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 8.3e-22 109.0 129 53.5
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 8.3e-22 109.0 80 76.2
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 1.1e-21 108.6 139 50.4
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.1e-21 108.6 143 49.7
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 1.1e-21 108.6 80 73.8
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 1.4e-21 108.2 122 55.7
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 1.4e-21 108.2 122 55.7
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 1.4e-21 108.2 122 55.7
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 1.9e-21 107.8 418 29.9
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 2.4e-21 107.5 80 73.8
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 2.4e-21 107.5 437 31.6
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 5.4e-21 106.3 134 52.2
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 5.4e-21 106.3 128 52.3
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 7.0e-21 105.9 122 54.1
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 7.0e-21 105.9 122 54.1
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 9.2e-21 105.5 413 30.3
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 1.6e-20 104.8 409 28.6
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 1.6e-20 104.8 380 30.0
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 1.6e-20 104.8 122 54.9
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 1.6e-20 104.8 400 30.8
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 2.0e-20 104.4 143 47.6
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 2.0e-20 104.4 395 29.9
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 2.7e-20 104.0 416 30.8
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 2.7e-20 104.0 134 50.0
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 3.5e-20 103.6 142 54.9
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 3.5e-20 103.6 130 53.1
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 4.6e-20 103.2 80 72.5
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 6.0e-20 102.8 397 29.2
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 6.0e-20 102.8 136 45.6
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 7.8e-20 102.4 80 71.2
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 7.8e-20 102.4 122 54.1
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 1.0e-19 102.1 410 29.3
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 1.0e-19 102.1 405 35.3
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 1.3e-19 101.7 77 76.6
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 1.3e-19 101.7 395 28.9
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 1.7e-19 101.3 125 53.6
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 2.3e-19 100.9 405 31.9
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 3.9e-19 100.1 414 28.5
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 3.9e-19 100.1 136 50.0
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 3.9e-19 100.1 75 73.3
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 5.0e-19 99.8 145 46.9
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 5.0e-19 99.8 145 46.9
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 5.0e-19 99.8 145 46.9
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 5.0e-19 99.8 126 54.8
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 6.6e-19 99.4 122 53.3
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 6.6e-19 99.4 114 50.0
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 8.6e-19 99.0 79 72.2
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 1.1e-18 98.6 130 49.2
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 1.1e-18 98.6 419 27.9
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 1.5e-18 98.2 132 48.5
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 1.5e-18 98.2 129 49.6
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 1.9e-18 97.8 122 53.3
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 1.9e-18 97.8 131 47.3
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 2.5e-18 97.4 134 49.3
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 4.3e-18 96.7 133 47.4
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 7.3e-18 95.9 132 60.6
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 9.5e-18 95.5 398 27.6
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 1.2e-17 95.1 342 29.8
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 3.6e-17 93.6 82 67.1
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 3.6e-17 93.6 406 33.7
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 5.2e-16 89.7 403 27.0
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 6.8e-16 89.4 75 68.0
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 8.9e-16 89.0 130 43.1
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 8.9e-16 89.0 81 61.7
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 8.9e-16 89.0 79 65.8
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 2.6e-15 87.4 127 44.9
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 3.4e-15 87.0 127 43.3
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 3.4e-15 87.0 82 62.2
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 1.3e-14 85.1 83 59.0
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 1.7e-14 84.7 84 59.5
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 2.2e-14 84.3 84 58.3
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 2.2e-14 84.3 62 72.6
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 2.9e-14 84.0 124 45.2
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 2.9e-14 84.0 83 60.2
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 3.7e-14 83.6 132 43.2
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 4.9e-14 83.2 401 29.4
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 6.4e-14 82.8 413 29.8
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 6.4e-14 82.8 127 43.3
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 8.3e-14 82.4 127 44.1
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 8.3e-14 82.4 73 64.4
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 2.4e-13 80.9 82 59.8
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 3.2e-13 80.5 82 58.5
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 4.1e-13 80.1 80 57.5
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 7.1e-13 79.3 79 57.0
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 9.2e-13 79.0 127 40.9
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 9.2e-13 79.0 391 28.6
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 2.7e-12 77.4 72 61.1
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 2.7e-12 77.4 79 55.7
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 2.7e-12 77.4 79 55.7
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 2.7e-12 77.4 79 55.7
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 1.7e-11 74.7 399 27.1
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 2.3e-11 74.3 82 54.9
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 3.9e-11 73.6 82 58.5
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 5.1e-11 73.2 130 40.0
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 6.6e-11 72.8 82 53.7
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 8.6e-11 72.4 82 53.7
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 1.1e-10 72.0 122 41.8
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 1.1e-10 72.0 85 52.9
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 1.1e-10 72.0 85 52.9
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 1.1e-10 72.0 85 52.9
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 1.5e-10 71.6 74 54.1
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 2.5e-10 70.9 82 52.4
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 4.3e-10 70.1 142 38.0
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 4.3e-10 70.1 124 44.4
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 4.3e-10 70.1 340 26.8
Actinidia40043 Actinidia chinensis HOM05D004499 ORTHO05D004928 5.6e-10 69.7 111 44.1
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 9.5e-10 68.9 75 54.7
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 1.2e-09 68.6 81 50.6
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 2.1e-09 67.8 85 50.6
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 2.1e-09 67.8 76 46.1
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 8.1e-09 65.9 127 37.8
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 8.1e-09 65.9 125 39.2
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 5.2e-08 63.2 410 26.1
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 6.8e-08 62.8 136 38.2
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 1.5e-07 61.6 85 50.6
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 9.9e-07 58.9 83 50.6


User provided reference genes

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