Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0051971 Helianthus annuus HOM05D007360 ORTHO05D008235 6.4e-37 157.5 122 100.0
HanXRQChr02g0051981 Helianthus annuus HOM05D007360 ORTHO05D008235 6.4e-37 157.5 122 100.0
ECA233G0563 Erigeron canadensis HOM05D007360 ORTHO05D008235 5.6e-17 91.3 118 50.0
Lsat_1_v5_gn_6_30100 Lactuca sativa HOM05D007360 ORTHO05D008235 1.4e-15 86.7 117 48.7
Actinidia19699 Actinidia chinensis HOM05D007360 ORTHO05D008235 9.0e-15 84.0 127 41.7
Hma1.2p1_0111F.1_g053990 Hydrangea macrophylla HOM05D007360 ORTHO05D008235 9.9e-14 80.5 120 45.8
Sc20g0005120 Simmondsia chinensis HOM05D007360 ORTHO05D008235 2.2e-13 79.3 113 45.1
Cfa017520 Carpinus fangiana HOM05D007360 ORTHO05D008235 4.9e-13 78.2 130 42.3
Haze_20630 Corylus avellana HOM05D007360 ORTHO05D008235 1.1e-12 77.0 130 42.3
PGR004G0580 Punica granatum HOM05D007360 ORTHO05D008235 1.9e-12 76.3 121 43.0
QL07p045105 Quercus lobata HOM05D007360 ORTHO05D008235 1.9e-12 76.3 120 42.5
TAR633G0942 Trochodendron aralioides HOM05D007360 ORTHO05D008235 2.4e-12 75.9 130 40.8
vmacro20051 Vaccinium macrocarpon HOM05D007360 ORTHO05D008235 3.2e-12 75.5 127 40.9
Solyc09g007460.4 Solanum lycopersicum HOM05D007360 ORTHO05D008235 4.2e-12 75.1 117 45.3
Thecc.05G055700 Theobroma cacao HOM05D007360 ORTHO05D008235 4.2e-12 75.1 133 43.6
Sopen00g009140 Solanum pennellii HOM05D007360 ORTHO05D008235 5.4e-12 74.7 117 44.4
Sopen09g002350 Solanum pennellii HOM05D007360 ORTHO05D008235 5.4e-12 74.7 117 44.4
AT3G09730 Arabidopsis thaliana HOM05D007360 ORTHO05D008235 7.1e-12 74.3 115 42.6
ClCG10G020460 Citrullus lanatus HOM05D007360 ORTHO05D008235 7.1e-12 74.3 122 43.4
CiPaw.09G179100 Carya illinoinensis HOM05D007360 ORTHO05D008235 2.7e-11 72.4 132 40.9
Cpa.g.sc174.13 Carica papaya HOM05D007360 ORTHO05D008235 3.5e-11 72.0 130 40.0
Duzib128G1437 Durio zibethinus HOM05D007360 ORTHO05D008235 3.5e-11 72.0 127 40.9
Potri.006G130600 Populus trichocarpa HOM05D007360 ORTHO05D008235 3.5e-11 72.0 120 40.8
COL.COLO4_27062 Corchorus olitorius HOM05D007360 ORTHO05D008235 4.6e-11 71.6 130 40.8
PGSC0003DMG400001741 Solanum tuberosum HOM05D007360 ORTHO05D008235 4.6e-11 71.6 125 41.6
VMungo0720G0507 Vigna mungo HOM05D007360 ORTHO05D008235 4.6e-11 71.6 127 37.8
MELO3C009325.2 Cucumis melo HOM05D007360 ORTHO05D008235 6.0e-11 71.2 122 41.0
AL3G20950 Arabidopsis lyrata HOM05D007360 ORTHO05D008235 7.9e-11 70.9 117 41.0
MD04G1105400 Malus domestica HOM05D007360 ORTHO05D008235 7.9e-11 70.9 120 40.0
Sp3g08070 Schrenkiella parvula HOM05D007360 ORTHO05D008235 7.9e-11 70.9 118 39.8
Glyma.13G137900 Glycine max HOM05D007360 ORTHO05D008235 1.3e-10 70.1 125 41.6
Carub.0003s0882 Capsella rubella HOM05D007360 ORTHO05D008235 3.0e-10 68.9 113 39.8
CsaV3_3G035660 Cucumis sativus L. HOM05D007360 ORTHO05D008235 3.0e-10 68.9 122 40.2
Manes.08G004904 Manihot esculenta HOM05D007360 ORTHO05D008235 3.0e-10 68.9 120 40.0
Duzib093G0075 Durio zibethinus HOM05D007360 ORTHO05D008235 3.9e-10 68.6 131 40.5
TWI74G1131 Tripterygium wilfordii HOM05D007360 ORTHO05D008235 3.9e-10 68.6 130 39.2
Atru.chr8.1896 Acer truncatum HOM05D007360 ORTHO05D008235 5.1e-10 68.2 124 41.9
Glyma.10G050400 Glycine max HOM05D007360 ORTHO05D008235 6.7e-10 67.8 125 38.4
Ciclev10011834m.g Citrus clementina HOM05D007360 ORTHO05D008235 8.7e-10 67.4 131 38.9
Aa31LG3G2160 Aethionema arabicum HOM05D007360 ORTHO05D008235 1.1e-09 67.0 110 40.0
Sed0020725 Sechium edule HOM05D007360 ORTHO05D008235 1.1e-09 67.0 126 39.7
MSTRG.10303 Avicennia marina HOM05D007360 ORTHO05D008235 1.5e-09 66.6 128 37.5
Phvul.007G164700 Phaseolus vulgaris HOM05D007360 ORTHO05D008235 1.5e-09 66.6 127 36.2
CSS0042376 Camellia sinensis var. sinensis HOM05D007360 ORTHO05D008235 1.9e-09 66.2 122 39.3
Nitab4.5_0006156g0020 Nicotiana tabacum HOM05D007360 ORTHO05D008235 3.3e-09 65.5 123 39.8
A01p42170 Brassica napus HOM05D007360 ORTHO05D008235 5.6e-09 64.7 117 41.9
BolC1t05436H Brassica oleracea HOM05D007360 ORTHO05D008235 5.6e-09 64.7 113 39.8
RcHm_v2.0_Chr3g0469001 Rosa chinensis HOM05D007360 ORTHO05D008235 5.6e-09 64.7 137 43.8
THA.LOC104816327 Tarenaya hassleriana HOM05D007360 ORTHO05D008235 5.6e-09 64.7 122 38.5
Thhalv10020860m.g Eutrema salsugineum HOM05D007360 ORTHO05D008235 9.6e-09 63.9 113 38.9
FvH4_6g15500 Fragaria vesca HOM05D007360 ORTHO05D008235 9.6e-09 63.9 135 38.5
FAN09G4144 Fragaria x ananassa HOM05D007360 ORTHO05D008235 9.6e-09 63.9 135 38.5
FAN14G4542 Fragaria x ananassa HOM05D007360 ORTHO05D008235 9.6e-09 63.9 135 38.5
BraA01t04285Z Brassica rapa HOM05D007360 ORTHO05D008235 1.3e-08 63.5 113 39.8
Dinv35727 Davidia involucrata HOM05D007360 ORTHO05D008235 1.3e-08 63.5 118 42.4
Peaxi162Scf00005g04017 Petunia axillaris HOM05D007360 ORTHO05D008235 1.3e-08 63.5 116 39.7
CARHR084150 Cardamine hirsuta HOM05D007360 ORTHO05D008235 1.6e-08 63.2 119 37.8
Migut.L01667 Erythranthe guttata HOM05D007360 ORTHO05D008235 1.6e-08 63.2 120 37.5
Nitab4.5_0000669g0130 Nicotiana tabacum HOM05D007360 ORTHO05D008235 1.6e-08 63.2 125 38.4
CANSAT80G2624 Cannabis sativa HOM05D007360 ORTHO05D008235 2.1e-08 62.8 125 38.4
Manes.05G197400 Manihot esculenta HOM05D007360 ORTHO05D008235 2.1e-08 62.8 120 38.3
Prupe.6G240300 Prunus persica HOM05D007360 ORTHO05D008235 2.8e-08 62.4 134 37.3
Manes.08G004119 Manihot esculenta HOM05D007360 ORTHO05D008235 3.7e-08 62.0 112 39.3
Manes.08G004112 Manihot esculenta HOM05D007360 ORTHO05D008235 4.8e-08 61.6 111 39.6
Lj5g0015354 Lotus japonicus HOM05D007360 ORTHO05D008235 6.2e-08 61.2 115 47.0
Manes.08G014114 Manihot esculenta HOM05D007360 ORTHO05D008235 6.2e-08 61.2 120 38.3
Oeu060091.1 Olea europaea HOM05D007360 ORTHO05D008235 6.2e-08 61.2 124 39.5
Lalb_Chr02g0156301 Lupinus albus HOM05D007360 ORTHO05D008235 8.1e-08 60.8 128 34.4
Manes.12G045236 Manihot esculenta HOM05D007360 ORTHO05D008235 1.1e-07 60.5 120 38.3
FAN02G3036 Fragaria x ananassa HOM05D007360 ORTHO05D008235 3.1e-07 58.9 137 36.5
Manes.08G004107 Manihot esculenta HOM05D007360 ORTHO05D008235 3.1e-07 58.9 120 37.5
Manes.08G004115 Manihot esculenta HOM05D007360 ORTHO05D008235 3.1e-07 58.9 120 37.5
Manes.08G004130 Manihot esculenta HOM05D007360 ORTHO05D008235 3.1e-07 58.9 120 37.5
Cc06_g03670 Coffea canephora HOM05D007360 ORTHO05D008235 5.3e-07 58.2 128 37.5
Manes.08G004118 Manihot esculenta HOM05D007360 ORTHO05D008235 6.9e-07 57.8 110 39.1
Nn2g13027 Nelumbo nucifera HOM05D007360 ORTHO05D008235 9.0e-07 57.4 122 35.2
Ah.08g211880 Amaranthus hybridus HOM05D007360 ORTHO05D008235 1.5e-06 56.6 126 34.1
Lj1g0018826 Lotus japonicus HOM05D007360 ORTHO05D008235 1.5e-06 56.6 127 33.1
Gohir.D04G115000 Gossypium hirsutum HOM05D007360 ORTHO05D008235 2.0e-06 56.2 101 38.6
Gorai.009G419600 Gossypium raimondii HOM05D007360 ORTHO05D008235 2.0e-06 56.2 101 38.6
Gohir.A04G075900 Gossypium hirsutum HOM05D007360 ORTHO05D008235 5.8e-06 54.7 101 37.6
SGA_v2.0_scaffold126G33907 Striga asiatica HOM05D007360 ORTHO05D008235 5.8e-06 54.7 118 34.7
EL10Ac7g16510 Beta vulgaris HOM05D007360 ORTHO05D008235 7.6e-06 54.3 129 37.2
Manes.08G004103 Manihot esculenta HOM05D007360 ORTHO05D008235 7.6e-06 54.3 121 38.8
Manes.08G004125 Manihot esculenta HOM05D007360 ORTHO05D008235 7.6e-06 54.3 120 35.8


User provided reference genes

Program Settings