Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0051831 Helianthus annuus HOM05D003773 ORTHO05D004377 2.9e-56 223.0 286 100.0
HanXRQChr02g0056321 Helianthus annuus HOM05D003773 ORTHO05D004377 7.9e-54 214.9 287 76.3
ECA233G0965 Erigeron canadensis HOM05D003773 ORTHO05D004377 2.2e-48 196.8 286 93.7
Sopen03g037520 Solanum pennellii HOM05D003773 ORTHO05D004377 3.8e-48 196.1 284 76.1
Solyc03g118570.4 Solanum lycopersicum HOM05D003773 ORTHO05D004377 1.1e-47 194.5 284 76.1
MSTRG.22069 Avicennia marina HOM05D003773 ORTHO05D004377 4.6e-46 189.1 284 64.8
Nitab4.5_0002046g0050 Nicotiana tabacum HOM05D003773 ORTHO05D004377 6.1e-46 188.7 281 53.0
Sopen12g020600 Solanum pennellii HOM05D003773 ORTHO05D004377 1.0e-45 188.0 284 76.1
Peaxi162Scf00571g00532 Petunia axillaris HOM05D003773 ORTHO05D004377 1.8e-45 187.2 284 49.3
Ciclev10015999m.g Citrus clementina HOM05D003773 ORTHO05D004377 2.3e-45 186.8 282 73.0
TAR626G0538 Trochodendron aralioides HOM05D003773 ORTHO05D004377 2.3e-45 186.8 282 72.3
AUR62035657 Chenopodium quinoa HOM05D003773 ORTHO05D004377 3.0e-45 186.4 284 50.4
THA.LOC104799137 Tarenaya hassleriana HOM05D003773 ORTHO05D004377 3.9e-45 186.0 282 64.9
GSVIVG01019372001 Vitis vinifera HOM05D003773 ORTHO05D004377 3.9e-45 186.0 282 64.9
Cfa014475 Carpinus fangiana HOM05D003773 ORTHO05D004377 5.1e-45 185.7 282 75.5
Nn7g36520 Nelumbo nucifera HOM05D003773 ORTHO05D004377 5.1e-45 185.7 282 64.9
Nitab4.5_0001264g0100 Nicotiana tabacum HOM05D003773 ORTHO05D004377 5.1e-45 185.7 284 52.1
Solyc12g040810.2 Solanum lycopersicum HOM05D003773 ORTHO05D004377 5.1e-45 185.7 284 75.7
MSTRG.21385 Avicennia marina HOM05D003773 ORTHO05D004377 8.8e-45 184.9 283 65.0
AUR62017150 Chenopodium quinoa HOM05D003773 ORTHO05D004377 8.8e-45 184.9 284 52.5
Thhalv10021168m.g Eutrema salsugineum HOM05D003773 ORTHO05D004377 8.8e-45 184.9 284 63.7
Sp3g10300 Schrenkiella parvula HOM05D003773 ORTHO05D004377 8.8e-45 184.9 284 64.4
Nitab4.5_0007004g0040 Nicotiana tabacum HOM05D003773 ORTHO05D004377 1.1e-44 184.5 290 39.0
Sed0008204 Sechium edule HOM05D003773 ORTHO05D004377 1.1e-44 184.5 284 66.2
CiPaw.02G104400 Carya illinoinensis HOM05D003773 ORTHO05D004377 1.5e-44 184.1 282 66.7
Glyma.08G111200 Glycine max HOM05D003773 ORTHO05D004377 1.5e-44 184.1 282 72.3
Lj3C848T13 Lonicera japonica HOM05D003773 ORTHO05D004377 1.5e-44 184.1 284 38.0
Cfa004598 Carpinus fangiana HOM05D003773 ORTHO05D004377 2.0e-44 183.7 282 67.4
BcaNung06880 Brassica carinata HOM05D003773 ORTHO05D004377 2.6e-44 183.3 284 64.1
QL05p004180 Quercus lobata HOM05D003773 ORTHO05D004377 2.6e-44 183.3 283 72.4
C09p64680 Brassica napus HOM05D003773 ORTHO05D004377 3.3e-44 183.0 284 63.7
Lj4g0004931 Lotus japonicus HOM05D003773 ORTHO05D004377 3.3e-44 183.0 284 73.2
Carub.0006s1071 Capsella rubella HOM05D003773 ORTHO05D004377 4.4e-44 182.6 283 63.6
MELO3C023397.2 Cucumis melo HOM05D003773 ORTHO05D004377 4.4e-44 182.6 284 66.5
Actinidia31174 Actinidia chinensis HOM05D003773 ORTHO05D004377 5.7e-44 182.2 282 71.6
arahy.Tifrunner.gnm1.ann1.E2NQKT Arachis hypogaea HOM05D003773 ORTHO05D004377 5.7e-44 182.2 282 74.5
Cc04_g06080 Coffea canephora HOM05D003773 ORTHO05D004377 7.4e-44 181.8 282 63.8
Thhalv10014116m.g Eutrema salsugineum HOM05D003773 ORTHO05D004377 7.4e-44 181.8 283 62.9
SGA_v2.0_scaffold220G42596 Striga asiatica HOM05D003773 ORTHO05D004377 7.4e-44 181.8 309 53.4
EL10Ac9g21128 Beta vulgaris HOM05D003773 ORTHO05D004377 9.7e-44 181.4 284 73.9
Ca_17973_v3 Cicer arietinum L. HOM05D003773 ORTHO05D004377 9.7e-44 181.4 282 66.3
Migut.A01113 Erythranthe guttata HOM05D003773 ORTHO05D004377 1.7e-43 180.6 284 71.8
Aa31LG3G15020 Aethionema arabicum HOM05D003773 ORTHO05D004377 2.2e-43 180.3 283 62.9
CsaV3_7G032670 Cucumis sativus L. HOM05D003773 ORTHO05D004377 2.2e-43 180.3 284 66.2
Eucgr.G02437 Eucalyptus grandis HOM05D003773 ORTHO05D004377 2.8e-43 179.9 282 90.4
CAN.G843.44 Capsicum annuum HOM05D003773 ORTHO05D004377 3.7e-43 179.5 311 51.4
vmacro23351 Vaccinium macrocarpon HOM05D003773 ORTHO05D004377 3.7e-43 179.5 301 37.2
Lj4g0017678 Lotus japonicus HOM05D003773 ORTHO05D004377 4.8e-43 179.1 282 73.0
Psat7g074520 Pisum sativum HOM05D003773 ORTHO05D004377 4.8e-43 179.1 282 73.0
GSVIVG01000415001 Vitis vinifera HOM05D003773 ORTHO05D004377 8.2e-43 178.3 281 62.6
Aqoxy5G00933 Aquilegia oxysepala HOM05D003773 ORTHO05D004377 1.1e-42 177.9 282 80.5
Manes.04G060700 Manihot esculenta HOM05D003773 ORTHO05D004377 1.1e-42 177.9 284 63.0
RcHm_v2.0_Chr5g0048191 Rosa chinensis HOM05D003773 ORTHO05D004377 2.4e-42 176.8 284 72.9
Eucgr.G02268 Eucalyptus grandis HOM05D003773 ORTHO05D004377 3.1e-42 176.4 293 50.2
Lalb_Chr07g0186751 Lupinus albus HOM05D003773 ORTHO05D004377 3.1e-42 176.4 282 69.1
BcaB01g05426 Brassica carinata HOM05D003773 ORTHO05D004377 4.1e-42 176.0 285 62.1
FvH4_6g43850 Fragaria vesca HOM05D003773 ORTHO05D004377 4.1e-42 176.0 284 72.5
Hma1.2p1_1650F.1_g295665 Hydrangea macrophylla HOM05D003773 ORTHO05D004377 4.1e-42 176.0 282 91.5
Hma1.2p1_1872F.1_g306150 Hydrangea macrophylla HOM05D003773 ORTHO05D004377 4.1e-42 176.0 282 91.5
TPR.G11959 Trifolium pratense HOM05D003773 ORTHO05D004377 4.1e-42 176.0 282 66.3
PSO017G1854 Papaver somniferum HOM05D003773 ORTHO05D004377 5.3e-42 175.6 285 90.2
Hund25164 Selenicereus undatus HOM05D003773 ORTHO05D004377 5.3e-42 175.6 278 51.8
VMungo0251G2733 Vigna mungo HOM05D003773 ORTHO05D004377 9.1e-42 174.9 282 70.2
DCAR_023465 Daucus carota HOM05D003773 ORTHO05D004377 1.2e-41 174.5 283 38.9
TAR624G0440 Trochodendron aralioides HOM05D003773 ORTHO05D004377 1.5e-41 174.1 282 90.8
BolC9t59300H Brassica oleracea HOM05D003773 ORTHO05D004377 2.0e-41 173.7 286 63.6
FvH4_7g02690 Fragaria vesca HOM05D003773 ORTHO05D004377 2.6e-41 173.3 284 72.5
RcHm_v2.0_Chr2g0160601 Rosa chinensis HOM05D003773 ORTHO05D004377 2.6e-41 173.3 284 70.4
BcaB01g05423 Brassica carinata HOM05D003773 ORTHO05D004377 3.4e-41 172.9 285 36.8
FAN14G4120 Fragaria x ananassa HOM05D003773 ORTHO05D004377 4.5e-41 172.6 284 72.2
PSO339G0310 Papaver somniferum HOM05D003773 ORTHO05D004377 4.5e-41 172.6 285 89.8
FAN05G4396 Fragaria x ananassa HOM05D003773 ORTHO05D004377 5.9e-41 172.2 284 89.1
MBI02_g12519_MAGBIO Magnolia biondii HOM05D003773 ORTHO05D004377 1.0e-40 171.4 286 60.1
Zm00001eb035310 Zea mays HOM05D003773 ORTHO05D004377 1.3e-40 171.0 285 80.7
FAN10G4129 Fragaria x ananassa HOM05D003773 ORTHO05D004377 1.7e-40 170.6 284 71.8
Phvul.002G235200 Phaseolus vulgaris HOM05D003773 ORTHO05D004377 1.7e-40 170.6 282 70.9
CDE02G2566 Ceratophyllum demersum HOM05D003773 ORTHO05D004377 2.2e-40 170.2 282 88.3
Hund05549 Selenicereus undatus HOM05D003773 ORTHO05D004377 2.2e-40 170.2 302 35.8
Eucgr.K00882 Eucalyptus grandis HOM05D003773 ORTHO05D004377 3.8e-40 169.5 282 67.0
Peaxi162Scf00314g00337 Petunia axillaris HOM05D003773 ORTHO05D004377 5.0e-40 169.1 325 34.5
FAN03G1906 Fragaria x ananassa HOM05D003773 ORTHO05D004377 6.5e-40 168.7 284 58.5
Gorai.005G208400 Gossypium raimondii HOM05D003773 ORTHO05D004377 1.1e-39 167.9 282 63.8
FAN06G3388 Fragaria x ananassa HOM05D003773 ORTHO05D004377 3.2e-39 166.4 281 72.2
HPP92_004888 Vanilla planifolia HOM05D003773 ORTHO05D004377 1.2e-38 164.5 283 63.3
Os08g0512300 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 1.6e-38 164.1 285 80.4
Gohir.D02G186100 Gossypium hirsutum HOM05D003773 ORTHO05D004377 2.7e-38 163.3 282 62.8
Lsat_1_v5_gn_6_29461 Lactuca sativa HOM05D003773 ORTHO05D004377 3.6e-38 162.9 283 58.3
Atru.chr7.1713 Acer truncatum HOM05D003773 ORTHO05D004377 4.7e-38 162.5 282 47.2
AagrBONN_evm.TU.Sc2ySwM_117.1003 Anthoceros agrestis HOM05D003773 ORTHO05D004377 1.4e-37 161.0 282 81.9
AT5G12210 Arabidopsis thaliana HOM05D003773 ORTHO05D004377 1.5e-36 157.5 283 59.7
ClCG02G001540 Citrullus lanatus HOM05D003773 ORTHO05D004377 2.6e-36 156.8 278 35.6
Sc07g0000800 Simmondsia chinensis HOM05D003773 ORTHO05D004377 7.4e-36 155.2 284 60.6
RhsimUnG0210700 Rhododendron simsii HOM05D003773 ORTHO05D004377 1.3e-35 154.5 282 87.9
CBR_g17690 Chara braunii HOM05D003773 ORTHO05D004377 1.7e-35 154.1 282 74.1
Mapoly0074s0013 Marchantia polymorpha HOM05D003773 ORTHO05D004377 1.7e-35 154.1 282 68.1
vmacro03401 Vaccinium macrocarpon HOM05D003773 ORTHO05D004377 1.7e-35 154.1 334 32.3
Eucgr.G01407 Eucalyptus grandis HOM05D003773 ORTHO05D004377 8.2e-35 151.8 266 91.4
Pp3c1_39910 Physcomitrium patens HOM05D003773 ORTHO05D004377 8.2e-35 151.8 282 64.9
SEGI_14663 Sequoiadendron giganteum HOM05D003773 ORTHO05D004377 8.2e-35 151.8 282 66.0
SalBow3G2878 Salvia bowleyana HOM05D006351 ORTHO05D007796 1.1e-34 151.4 264 51.5
TWI39G0383 Tripterygium wilfordii HOM05D003773 ORTHO05D004377 3.1e-34 149.8 282 59.6
SMO340G0057 Selaginella moellendorffii HOM05D003773 ORTHO05D004377 4.1e-34 149.4 282 84.4
BcaB01g05420 Brassica carinata HOM05D003773 ORTHO05D004377 5.3e-34 149.1 288 33.3
FAN09G4222 Fragaria x ananassa HOM05D003773 ORTHO05D004377 5.3e-34 149.1 321 32.4
RcHm_v2.0_Chr7g0226631 Rosa chinensis HOM05D003773 ORTHO05D004377 5.3e-34 149.1 302 60.9
Duzib052G0913 Durio zibethinus HOM05D003773 ORTHO05D004377 7.0e-34 148.7 282 61.3
MD14G1230700 Malus domestica HOM05D003773 ORTHO05D004377 7.0e-34 148.7 278 33.5
AL6G23000 Arabidopsis lyrata HOM05D003773 ORTHO05D004377 2.6e-33 146.7 283 58.3
MD06G1221400 Malus domestica HOM05D003773 ORTHO05D004377 2.6e-33 146.7 289 50.2
Potri.013G012500 Populus trichocarpa HOM05D003773 ORTHO05D004377 1.0e-32 144.8 282 63.5
Sp6g31430 Schrenkiella parvula HOM05D003773 ORTHO05D004377 1.3e-32 144.4 285 57.5
SHI10290 Sapria himalayana HOM05D003773 ORTHO05D004377 2.2e-32 143.7 282 33.7
BolC3t13141H Brassica oleracea HOM05D003773 ORTHO05D004377 2.9e-32 143.3 291 32.6
CSS0007239 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 6.5e-32 142.1 257 93.0
COL.COLO4_03532 Corchorus olitorius HOM05D003773 ORTHO05D004377 6.5e-32 142.1 282 33.7
CANSAT11G0557 Cannabis sativa HOM05D003773 ORTHO05D004377 1.1e-31 141.4 285 65.6
Thecc.10G119200 Theobroma cacao HOM05D003773 ORTHO05D004377 1.1e-31 141.4 282 60.3
CSS0038312 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 2.5e-31 140.2 257 74.7
Dinv09299 Davidia involucrata HOM05D003773 ORTHO05D004377 2.7e-30 136.7 257 65.0
Eucgr.G01411 Eucalyptus grandis HOM05D003773 ORTHO05D004377 8.0e-30 135.2 291 31.6
C03p06330 Brassica napus HOM05D003773 ORTHO05D004377 1.8e-29 134.0 292 31.5
Ah.12g059510 Amaranthus hybridus HOM05D003773 ORTHO05D004377 6.7e-29 132.1 293 31.7
Cpa.g.sc50.7 Carica papaya HOM05D003773 ORTHO05D004377 3.3e-28 129.8 282 56.7
PGSC0003DMG400005677 Solanum tuberosum HOM05D003773 ORTHO05D004377 5.7e-28 129.0 64 90.6
PGR142G1397 Punica granatum HOM05D003773 ORTHO05D004377 7.5e-28 128.6 282 56.4
MBI02_g15890_MAGBIO Magnolia biondii HOM05D003773 ORTHO05D004377 2.2e-27 127.1 63 90.5
SGA_v2.0_scaffold227G43195 Striga asiatica HOM05D003773 ORTHO05D004377 2.2e-27 127.1 66 83.3
Medtr1g111160 Medicago truncatula HOM05D003773 ORTHO05D004377 2.8e-27 126.7 256 71.9
DCAR_026891 Daucus carota HOM05D003773 ORTHO05D004377 3.7e-27 126.3 63 92.1
ECA232G0889 Erigeron canadensis HOM05D003773 ORTHO05D004377 3.7e-27 126.3 67 89.6
Nn7g37010 Nelumbo nucifera HOM05D003773 ORTHO05D004377 3.7e-27 126.3 63 92.1
Nitab4.5_0010451g0020 Nicotiana tabacum HOM05D003773 ORTHO05D004377 6.3e-27 125.6 65 87.7
unitig_8.g4953 Utricularia gibba HOM05D003773 ORTHO05D004377 1.4e-26 124.4 63 88.9
Haze_12989 Corylus avellana HOM05D003773 ORTHO05D004377 1.8e-26 124.0 67 79.1
ClCG09G002660 Citrullus lanatus HOM05D003773 ORTHO05D004377 2.4e-26 123.6 383 27.2
QL08p034440 Quercus lobata HOM05D003773 ORTHO05D004377 4.1e-26 122.9 67 77.6
RhsimUnG0179500 Rhododendron simsii HOM05D003773 ORTHO05D004377 7.0e-26 122.1 65 76.9
RhsimUnG0179700 Rhododendron simsii HOM05D003773 ORTHO05D004377 7.0e-26 122.1 65 76.9
Aqoxy7G03759 Aquilegia oxysepala HOM05D003773 ORTHO05D004377 1.2e-25 121.3 65 78.5
QL08p034434 Quercus lobata HOM05D003773 ORTHO05D004377 2.7e-25 120.2 65 86.2
ATR0723G050 Amborella trichopoda HOM05D003773 ORTHO05D004377 5.9e-25 119.0 67 70.1
A10p25590 Brassica napus HOM05D003773 ORTHO05D004377 1.7e-24 117.5 68 73.5
BraA10t44626Z Brassica rapa HOM05D003773 ORTHO05D004377 1.7e-24 117.5 68 73.5
CARHR200910 Cardamine hirsuta HOM05D003773 ORTHO05D004377 2.2e-24 117.1 63 73.0
Eucgr.G01406 Eucalyptus grandis HOM05D003773 ORTHO05D004377 2.2e-24 117.1 66 74.2
Atru.chr6.919 Acer truncatum HOM05D003773 ORTHO05D004377 3.8e-24 116.3 62 85.5
A03p05440 Brassica napus HOM05D003773 ORTHO05D004377 5.0e-24 115.9 65 81.5
COL.COLO4_20947 Corchorus olitorius HOM05D003773 ORTHO05D004377 6.5e-24 115.5 282 28.0
Glyma.05G153500 Glycine max HOM05D003773 ORTHO05D004377 8.5e-24 115.2 64 73.4
AT3G12070 Arabidopsis thaliana HOM05D003773 ORTHO05D004377 1.1e-23 114.8 63 73.0
MD09G1102700 Malus domestica HOM05D003773 ORTHO05D004377 1.5e-23 114.4 66 71.2
Prupe.3G223100 Prunus persica HOM05D003773 ORTHO05D004377 1.9e-23 114.0 66 71.2
CDE05G0639 Ceratophyllum demersum HOM05D003773 ORTHO05D004377 5.5e-23 112.5 66 66.7
Pp3c14_22730 Physcomitrium patens HOM05D003773 ORTHO05D004377 5.5e-23 112.5 282 60.6
FAN01G0361 Fragaria x ananassa HOM05D009091 ORTHO05D004377 1.2e-22 111.3 67 68.7
Oeu015711.3 Olea europaea HOM05D003773 ORTHO05D004377 1.6e-22 110.9 54 96.3
Gohir.A03G162800 Gossypium hirsutum HOM05D003773 ORTHO05D004377 2.1e-22 110.5 64 68.8
Sabra13G0011200 Salix brachista HOM05D003773 ORTHO05D004377 4.7e-22 109.4 84 59.5
CsaV3_7G003910 Cucumis sativus L. HOM05D003773 ORTHO05D004377 3.0e-21 106.7 67 77.6
Pp3c2_3550 Physcomitrium patens HOM05D003773 ORTHO05D004377 7.5e-20 102.1 282 28.4
CSS0029091 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 9.8e-20 101.7 64 75.0
CiPaw.03G164900 Carya illinoinensis HOM05D003773 ORTHO05D004377 2.8e-19 100.1 52 86.5
Os11g0523500 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 1.4e-18 97.8 68 63.2
Prupe.5G225800 Prunus persica HOM05D003773 ORTHO05D004377 4.1e-18 96.3 67 64.2
Cre01.g053500 Chlamydomonas reinhardtii HOM05D003773 ORTHO05D004377 1.6e-17 94.4 66 56.1
Carub.0003s1141 Capsella rubella HOM05D003773 ORTHO05D004377 3.5e-17 93.2 73 57.5
PRCOL_00001116 Prasinoderma coloniale HOM05D003773 ORTHO05D004377 2.2e-16 90.5 67 56.7
AL3G23680 Arabidopsis lyrata HOM05D003773 ORTHO05D004377 2.1e-14 84.0 67 59.7
Haze_26189 Corylus avellana HOM05D003773 ORTHO05D004377 4.0e-13 79.7 68 48.5
Sabra13G0011000 Salix brachista HOM05D006169 ORTHO05D007698 3.4e-12 76.6 59 64.4
unitig_8.g4952 Utricularia gibba HOM05D003773 ORTHO05D004377 3.4e-12 76.6 42 76.2
MCO02G125 Micromonas commoda HOM05D003773 ORTHO05D004377 5.7e-12 75.9 67 52.2
Nn5g31474 Nelumbo nucifera HOM05D003773 ORTHO05D004377 1.3e-11 74.7 40 75.0
Cfa027002 Carpinus fangiana HOM05D003773 ORTHO05D123979 1.8e-10 70.9 48 60.4
RcHm_v2.0_Chr7g0235151 Rosa chinensis HOM05D005467 ORTHO05D006523 2.4e-10 70.5 46 67.4
AUR62041265 Chenopodium quinoa HOM05D003773 ORTHO05D004377 3.1e-10 70.1 41 73.2
Lj6C712G2 Lonicera japonica HOM05D003773 ORTHO05D004377 5.4e-10 69.3 41 73.2
Os03g0193700 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 7.0e-10 68.9 43 62.8
Prupe.2G111600 Prunus persica HOM05D003773 ORTHO05D004377 9.2e-10 68.6 67 49.3
MELO3C018787.2 Cucumis melo HOM05D003773 ORTHO05D004377 5.0e-08 62.8 67 46.3
BcaB01g05424 Brassica carinata HOM05D000005 ORTHO05D000449 4.3e-07 59.7 28 92.9
CSS0041311 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 3.6e-06 56.6 28 89.3
Lj6C717T13 Lonicera japonica HOM05D003773 ORTHO05D004377 4.7e-06 56.2 29 72.4
SEGI_16055 Sequoiadendron giganteum HOM05D003773 ORTHO05D004377 4.7e-06 56.2 35 57.1


User provided reference genes

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