Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 5.5e-237 823.9 419 100.0
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 2.4e-216 755.4 421 90.3
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 2.2e-209 732.3 419 88.3
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 6.3e-209 730.7 419 86.6
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 1.2e-186 656.8 410 78.8
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 5.7e-186 654.4 398 79.6
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 9.1e-184 647.1 419 76.1
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 1.2e-183 646.7 398 79.1
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 2.0e-183 646.0 398 79.4
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 4.5e-183 644.8 398 78.9
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 1.3e-182 643.3 402 79.4
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 2.2e-182 642.5 398 78.4
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 2.9e-182 642.1 402 77.9
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 3.8e-182 641.7 404 77.5
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 5.0e-182 641.3 402 77.1
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 5.0e-182 641.3 425 75.8
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 6.5e-182 641.0 404 77.5
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 1.5e-181 639.8 403 77.7
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 2.5e-181 639.0 398 77.9
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 2.5e-181 639.0 404 77.2
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 2.5e-181 639.0 398 78.6
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 2.5e-181 639.0 398 77.9
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 1.2e-180 636.7 392 79.3
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 1.6e-180 636.3 398 77.6
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 3.6e-180 635.2 425 74.4
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 4.7e-180 634.8 403 77.2
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 8.0e-180 634.0 398 78.9
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 2.3e-179 632.5 398 77.4
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.5e-178 629.8 404 75.7
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 2.0e-178 629.4 420 73.3
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 2.6e-178 629.0 392 78.6
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 3.4e-178 628.6 403 76.2
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 3.4e-178 628.6 415 74.5
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 7.5e-178 627.5 398 77.1
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 7.5e-178 627.5 415 74.2
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 9.8e-178 627.1 400 77.2
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 1.7e-177 626.3 454 69.8
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 1.7e-177 626.3 429 73.2
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 3.7e-177 625.2 403 75.9
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 4.9e-177 624.8 398 76.4
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 2.4e-176 622.5 402 74.1
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 3.1e-176 622.1 403 75.4
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 4.1e-176 621.7 392 76.3
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 5.4e-176 621.3 429 72.7
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 1.6e-175 619.8 403 74.7
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 1.6e-175 619.8 447 71.4
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 1.6e-175 619.8 394 76.4
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 1.6e-175 619.8 390 77.9
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 2.0e-175 619.4 403 75.2
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 2.0e-175 619.4 389 77.9
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 2.7e-175 619.0 399 75.9
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 3.5e-175 618.6 384 78.6
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 4.5e-175 618.2 399 76.2
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 4.5e-175 618.2 430 72.8
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 1.0e-174 617.1 403 74.2
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 1.7e-174 616.3 392 76.0
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 2.3e-174 615.9 395 75.4
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 3.8e-174 615.1 403 74.9
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 3.8e-174 615.1 456 70.4
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 5.0e-174 614.8 396 76.0
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 5.0e-174 614.8 415 72.8
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 8.6e-174 614.0 418 72.2
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 1.1e-173 613.6 398 75.9
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 4.3e-173 611.7 441 70.5
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 7.3e-173 610.9 403 73.9
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 7.3e-173 610.9 395 74.9
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 8.0e-172 607.4 373 80.2
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 1.8e-171 606.3 403 73.2
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 1.5e-170 603.2 398 74.6
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 2.0e-170 602.8 404 73.8
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 1.8e-168 596.3 405 71.9
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 7.0e-168 594.3 397 73.8
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 1.6e-167 593.2 434 69.4
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 4.6e-167 591.7 398 73.4
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 5.9e-167 591.3 398 73.4
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 3.0e-166 589.0 392 73.7
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 6.6e-166 587.8 403 72.2
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 6.6e-166 587.8 403 72.2
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 5.6e-165 584.7 404 70.8
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 3.4e-162 575.5 394 72.1
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 4.4e-162 575.1 403 69.7
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 5.8e-162 574.7 409 70.7
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 1.7e-158 563.1 403 67.5
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 2.3e-158 562.8 396 72.2
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 2.5e-157 559.3 355 77.5
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 9.5e-157 557.4 362 75.7
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.2e-156 557.0 362 75.1
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 4.7e-156 555.1 545 56.3
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 5.2e-155 551.6 357 75.6
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.5e-154 550.1 404 66.1
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 7.5e-154 547.7 422 65.9
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 4.9e-153 545.0 439 65.4
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 2.8e-148 529.3 375 71.2
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 2.0e-146 523.1 331 75.5
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 9.2e-144 514.2 344 71.5
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 6.0e-143 511.5 355 70.1
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.0e-142 510.8 338 72.5
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 2.3e-142 509.6 396 66.4
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 8.6e-142 507.7 390 63.6
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 1.1e-141 507.3 391 61.1
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 7.3e-141 504.6 381 63.3
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 6.0e-135 485.0 308 77.6
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 1.6e-127 460.3 389 60.9
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 7.9e-127 458.0 334 66.8
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 7.6e-122 441.4 341 66.0
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 7.1e-120 434.9 348 66.4
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 6.9e-115 418.3 395 53.4
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 9.3e-112 407.9 277 71.5
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 1.2e-111 407.5 262 77.5
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 2.5e-109 399.8 278 70.9
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 2.5e-101 373.2 325 61.5
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 5.7e-101 372.1 317 58.0
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 1.4e-99 367.5 405 48.1
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 1.7e-97 360.5 228 76.3
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 8.5e-89 331.6 399 44.4
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 5.5e-88 328.9 393 44.3
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 6.5e-65 252.3 266 51.1
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 1.8e-62 244.2 232 59.5
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 9.8e-61 238.4 170 62.4
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 2.3e-54 217.2 145 75.9
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 5.8e-53 212.6 129 79.1
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 1.4e-51 208.0 154 67.5
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 7.0e-51 205.7 344 34.0
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-46 190.7 167 55.1
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 6.8e-46 189.1 122 72.1
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 3.7e-36 156.8 139 60.4
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 7.8e-34 149.1 84 86.9
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 3.1e-30 137.1 415 30.6
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 2.2e-28 131.0 107 66.4
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 1.7e-25 121.3 95 68.4
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 1.8e-22 111.3 74 77.0
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 5.4e-19 99.8 64 65.6
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 8.7e-17 92.4 93 55.9
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 2.4e-14 84.3 78 56.4
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 5.8e-13 79.7 66 63.6
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 3.8e-12 77.0 62 59.7
GSVIVG01003967001 Vitis vinifera HOM05D003363 ORTHO05D003952 9.6e-08 62.4 68 47.1
RhsimUnG0131100 Rhododendron simsii HOM05D005532 ORTHO05D000282 8.1e-07 59.3 44 63.6
CBR_g38900 Chara braunii HOM05D021006 ORTHO05D024937 1.1e-06 58.9 150 31.3
CBR_g38904 Chara braunii HOM05D021006 ORTHO05D024937 2.4e-06 57.8 150 30.7
AUR62000670 Chenopodium quinoa HOM05D001135 ORTHO05D001005 4.0e-06 57.0 47 59.6
AUR62039850 Chenopodium quinoa HOM05D005532 ORTHO05D006873 4.0e-06 57.0 40 70.0


User provided reference genes

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