Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0051301 Helianthus annuus HOM05D004378 ORTHO05D005269 1.2e-187 659.8 371 100.0
HanXRQChr13g0401501 Helianthus annuus HOM05D004378 ORTHO05D005269 2.5e-177 625.5 371 87.3
ECA233G1578 Erigeron canadensis HOM05D004378 ORTHO05D005269 3.8e-173 611.7 372 85.8
Lsat_1_v5_gn_6_26200 Lactuca sativa HOM05D004378 ORTHO05D005269 3.4e-158 562.0 323 89.8
CSS0043718 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 9.3e-148 527.3 322 82.0
Actinidia16337 Actinidia chinensis HOM05D004378 ORTHO05D005269 3.3e-145 518.8 322 80.4
Lsat_1_v5_gn_2_31060 Lactuca sativa HOM05D004378 ORTHO05D005269 9.7e-145 517.3 295 87.8
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla HOM05D004378 ORTHO05D005269 1.1e-143 513.8 321 80.4
Duzib168G0314 Durio zibethinus HOM05D004378 ORTHO05D005269 1.5e-142 510.0 321 79.4
Actinidia06909 Actinidia chinensis HOM05D004378 ORTHO05D005269 2.6e-142 509.2 322 79.2
Thecc.09G234500 Theobroma cacao HOM05D004378 ORTHO05D005269 3.4e-142 508.8 321 80.1
Prupe.4G250000 Prunus persica HOM05D004378 ORTHO05D005269 4.5e-142 508.4 322 79.8
Manes.06G163800 Manihot esculenta HOM05D004378 ORTHO05D005269 7.7e-142 507.7 320 79.4
Atru.chr3.2709 Acer truncatum HOM05D004378 ORTHO05D005269 6.5e-141 504.6 321 79.4
Duzib150G1120 Durio zibethinus HOM05D004378 ORTHO05D005269 8.5e-141 504.2 321 79.1
Nn2g15350 Nelumbo nucifera HOM05D004378 ORTHO05D005269 1.1e-140 503.8 322 77.0
Gohir.A08G013900 Gossypium hirsutum HOM05D004378 ORTHO05D005269 1.4e-140 503.4 322 79.8
Gohir.D08G024400 Gossypium hirsutum HOM05D004378 ORTHO05D005269 1.4e-140 503.4 322 79.8
Gorai.004G019800 Gossypium raimondii HOM05D004378 ORTHO05D005269 1.4e-140 503.4 322 79.8
Potri.009G052800 Populus trichocarpa HOM05D004378 ORTHO05D005269 1.9e-140 503.1 323 79.3
Ciclev10015746m.g Citrus clementina HOM05D004378 ORTHO05D005269 3.2e-140 502.3 321 80.7
Migut.D00605 Erythranthe guttata HOM05D004378 ORTHO05D005269 9.4e-140 500.7 298 81.9
MD11G1192300 Malus domestica HOM05D004378 ORTHO05D005269 9.4e-140 500.7 322 78.6
DCAR_030049 Daucus carota HOM05D004378 ORTHO05D005269 1.2e-139 500.4 322 78.9
TAR369G0513 Trochodendron aralioides HOM05D004378 ORTHO05D005269 3.6e-139 498.8 322 78.6
RcHm_v2.0_Chr5g0052271 Rosa chinensis HOM05D004378 ORTHO05D005269 1.0e-138 497.3 320 79.7
MSTRG.18430 Avicennia marina HOM05D004378 ORTHO05D005269 1.4e-138 496.9 319 78.1
CANSAT54G1532 Cannabis sativa HOM05D004378 ORTHO05D005269 2.3e-138 496.1 321 78.2
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea HOM05D004378 ORTHO05D005269 8.8e-138 494.2 320 78.4
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea HOM05D004378 ORTHO05D005269 8.8e-138 494.2 320 78.4
Cc01_g04470 Coffea canephora HOM05D004378 ORTHO05D005269 8.8e-138 494.2 318 78.9
Dinv22174 Davidia involucrata HOM05D004378 ORTHO05D005269 1.1e-137 493.8 288 84.0
Glyma.08G336000 Glycine max HOM05D004378 ORTHO05D005269 1.1e-137 493.8 320 78.1
Nn7g36225 Nelumbo nucifera HOM05D004378 ORTHO05D005269 1.1e-137 493.8 322 76.4
CiPaw.13G159900 Carya illinoinensis HOM05D004378 ORTHO05D005269 1.5e-137 493.4 321 77.9
CiPaw.14G118500 Carya illinoinensis HOM05D004378 ORTHO05D005269 1.5e-137 493.4 321 77.3
Medtr3g061490 Medicago truncatula HOM05D004378 ORTHO05D005269 2.5e-137 492.7 320 79.1
TPR.G14725 Trifolium pratense HOM05D004378 ORTHO05D005269 9.7e-137 490.7 320 78.1
Nitab4.5_0000023g0700 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.3e-136 490.3 321 77.6
GSVIVG01025251001 Vitis vinifera HOM05D004378 ORTHO05D005269 1.7e-136 490.0 321 77.3
Sed0026402 Sechium edule HOM05D004378 ORTHO05D005269 3.7e-136 488.8 312 78.8
Ca_14874_v3 Cicer arietinum L. HOM05D004378 ORTHO05D005269 6.3e-136 488.0 320 77.2
MELO3C015197.2 Cucumis melo HOM05D004378 ORTHO05D005269 6.3e-136 488.0 321 77.6
FvH4_3g28770 Fragaria vesca HOM05D004378 ORTHO05D005269 6.3e-136 488.0 322 78.9
Lj6g0003660 Lotus japonicus HOM05D004378 ORTHO05D005269 8.2e-136 487.6 320 77.8
Potri.001G257500 Populus trichocarpa HOM05D004378 ORTHO05D005269 8.2e-136 487.6 323 76.8
VMungo0540G0714 Vigna mungo HOM05D004378 ORTHO05D005269 1.1e-135 487.3 320 77.8
CsaV3_1G042790 Cucumis sativus L. HOM05D004378 ORTHO05D005269 1.4e-135 486.9 321 77.3
Peaxi162Scf00032g00327 Petunia axillaris HOM05D004378 ORTHO05D005269 2.4e-135 486.1 325 76.6
Phvul.006G062100 Phaseolus vulgaris HOM05D004378 ORTHO05D005269 2.4e-135 486.1 321 77.9
Cfa009777 Carpinus fangiana HOM05D004378 ORTHO05D005269 5.3e-135 485.0 289 82.4
Glyma.18G071100 Glycine max HOM05D004378 ORTHO05D005269 6.9e-135 484.6 320 77.2
TWI60G1037 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 6.9e-135 484.6 323 76.2
ClCG03G013210 Citrullus lanatus HOM05D004378 ORTHO05D005269 1.2e-134 483.8 319 77.1
Lalb_Chr15g0082531 Lupinus albus HOM05D004378 ORTHO05D005269 2.6e-134 482.6 320 76.2
QL01p004640 Quercus lobata HOM05D004378 ORTHO05D005269 5.9e-134 481.5 321 75.1
Migut.N02321 Erythranthe guttata HOM05D004378 ORTHO05D005269 1.7e-133 479.9 315 76.5
FAN25G2048 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.7e-133 479.9 342 74.9
SGA_v2.0_scaffold247G44883 Striga asiatica HOM05D004378 ORTHO05D005269 1.7e-133 479.9 297 79.1
Sabra16G0157500 Salix brachista HOM05D004378 ORTHO05D005269 2.2e-133 479.6 323 76.2
COL.COLO4_07579 Corchorus olitorius HOM05D004378 ORTHO05D005269 2.9e-133 479.2 289 82.0
Haze_23143 Corylus avellana HOM05D004378 ORTHO05D005269 2.9e-133 479.2 321 77.3
FAN11G1994 Fragaria x ananassa HOM05D004378 ORTHO05D005269 2.9e-133 479.2 342 74.9
Nitab4.5_0002786g0020 Nicotiana tabacum HOM05D004378 ORTHO05D005269 5.0e-133 478.4 335 74.0
Rhsim13G0220800 Rhododendron simsii HOM05D004378 ORTHO05D005269 6.5e-133 478.0 293 80.2
PSO384G0525 Papaver somniferum HOM05D004378 ORTHO05D005269 8.5e-133 477.6 319 74.3
PSO339G6315 Papaver somniferum HOM05D004378 ORTHO05D005269 1.4e-132 476.9 319 74.3
CAN.G1204.2 Capsicum annuum HOM05D004378 ORTHO05D005269 1.9e-132 476.5 321 75.4
FAN16G3181 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.9e-132 476.5 342 74.9
EL10Ac4g10244 Beta vulgaris HOM05D004378 ORTHO05D005269 2.5e-132 476.1 321 73.5
Dinv36255 Davidia involucrata HOM05D004378 ORTHO05D005269 2.5e-132 476.1 284 82.7
PGSC0003DMG400007339 Solanum tuberosum HOM05D004378 ORTHO05D005269 4.2e-132 475.3 321 76.3
TWI34G1172 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 1.2e-131 473.8 319 76.2
Aqoxy1G00284 Aquilegia oxysepala HOM05D004378 ORTHO05D005269 2.1e-131 473.0 320 73.1
Lalb_Chr18g0050451 Lupinus albus HOM05D004378 ORTHO05D005269 6.1e-131 471.5 320 74.7
CDE05G0340 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 7.9e-131 471.1 322 73.6
Peaxi162Scf00004g02527 Petunia axillaris HOM05D004378 ORTHO05D005269 1.0e-130 470.7 332 74.4
Oeu001481.2 Olea europaea HOM05D004378 ORTHO05D005269 3.9e-130 468.8 287 79.4
Eucgr.J00761 Eucalyptus grandis HOM05D004378 ORTHO05D005269 2.0e-129 466.5 323 73.7
MBI04_g36075_MAGBIO Magnolia biondii HOM05D004378 ORTHO05D005269 2.0e-129 466.5 320 71.6
CDE05G0884 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 3.3e-129 465.7 322 73.0
AUR62000126 Chenopodium quinoa HOM05D004378 ORTHO05D005269 7.4e-129 464.5 321 71.7
Ah.06g194140 Amaranthus hybridus HOM05D004378 ORTHO05D005269 3.7e-128 462.2 321 72.0
Sopen11g025430 Solanum pennellii HOM05D004378 ORTHO05D005269 1.1e-127 460.7 299 76.9
unitig_699.g19136 Utricularia gibba HOM05D004378 ORTHO05D005269 1.1e-127 460.7 326 73.0
Psat5g163880 Pisum sativum HOM05D004378 ORTHO05D005269 1.4e-127 460.3 320 72.8
CSS0001002 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 3.1e-127 459.1 289 80.3
SGA_v2.0_scaffold8G04586 Striga asiatica HOM05D004378 ORTHO05D005269 4.1e-127 458.8 304 74.7
Sabra09G0038500 Salix brachista HOM05D004378 ORTHO05D005269 2.6e-126 456.1 417 61.2
unitig_27.g24995 Utricularia gibba HOM05D004378 ORTHO05D005269 4.5e-126 455.3 315 73.0
Oeu016680.1 Olea europaea HOM05D004378 ORTHO05D005269 7.7e-126 454.5 290 76.6
Sopen01g003990 Solanum pennellii HOM05D004378 ORTHO05D005269 3.8e-125 452.2 321 72.3
PGSC0003DMG400010703 Solanum tuberosum HOM05D004378 ORTHO05D005269 3.8e-125 452.2 321 72.6
Solyc01g008470.3 Solanum lycopersicum HOM05D004378 ORTHO05D005269 8.5e-125 451.1 321 72.0
THA.LOC104799106 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 3.2e-124 449.1 327 69.1
Hund22027 Selenicereus undatus HOM05D004378 ORTHO05D005269 1.1e-121 440.7 322 68.3
Lj2A629T47 Lonicera japonica HOM05D004378 ORTHO05D005269 1.5e-121 440.3 289 76.1
Aa31LG10G3540 Aethionema arabicum HOM05D004378 ORTHO05D005269 2.0e-121 439.9 311 71.1
THA.LOC104816878 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 3.3e-121 439.1 321 70.7
Nitab4.5_0001587g0030 Nicotiana tabacum HOM05D004378 ORTHO05D005269 2.4e-119 433.0 326 69.0
Nitab4.5_0002741g0140 Nicotiana tabacum HOM05D004378 ORTHO05D005269 7.0e-119 431.4 289 74.4
PGR119G1351 Punica granatum HOM05D004378 ORTHO05D005269 3.5e-118 429.1 288 73.6
Os02g0435000 Oryza sativa ssp. japonica HOM05D004378 ORTHO05D005269 1.7e-117 426.8 317 65.9
CARHR096800 Cardamine hirsuta HOM05D004378 ORTHO05D005269 2.9e-117 426.0 322 67.1
THA.LOC104824616 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 3.8e-117 425.6 321 68.2
ATR0332G071 Amborella trichopoda HOM05D004378 ORTHO05D005269 5.0e-117 425.2 323 68.1
Sp3g18950 Schrenkiella parvula HOM05D004378 ORTHO05D005269 1.9e-116 423.3 322 66.8
BcaB04g20618 Brassica carinata HOM05D004378 ORTHO05D005269 7.2e-116 421.4 322 66.1
A01p33870 Brassica napus HOM05D004378 ORTHO05D005269 2.1e-115 419.9 339 63.7
C05p43130 Brassica napus HOM05D004378 ORTHO05D005269 6.1e-115 418.3 322 66.8
BolC5t33043H Brassica oleracea HOM05D004378 ORTHO05D005269 6.1e-115 418.3 322 66.8
BraA05t21666Z Brassica rapa HOM05D004378 ORTHO05D005269 6.1e-115 418.3 322 67.1
A05p27790 Brassica napus HOM05D004378 ORTHO05D005269 8.0e-115 417.9 322 67.1
Sed0000917 Sechium edule HOM05D004378 ORTHO05D005269 8.0e-115 417.9 353 64.3
Zm00001eb064100 Zea mays HOM05D004378 ORTHO05D005269 1.4e-114 417.2 316 64.2
Carub.0003s2090 Capsella rubella HOM05D004378 ORTHO05D005269 3.0e-114 416.0 322 65.2
BraA01t03495Z Brassica rapa HOM05D004378 ORTHO05D005269 4.0e-114 415.6 322 65.2
BcaB06g26169 Brassica carinata HOM05D004378 ORTHO05D005269 5.2e-114 415.2 322 66.5
Aa31LG8G7740 Aethionema arabicum HOM05D004378 ORTHO05D005269 3.4e-113 412.5 322 65.2
Manes.14G003200 Manihot esculenta HOM05D004378 ORTHO05D005269 3.4e-113 412.5 321 68.8
Thhalv10021027m.g Eutrema salsugineum HOM05D004378 ORTHO05D005269 4.4e-113 412.1 322 65.8
Zm00001eb210940 Zea mays HOM05D004378 ORTHO05D005269 7.5e-113 411.4 316 63.0
AT3G20920 Arabidopsis thaliana HOM05D004378 ORTHO05D005269 1.7e-112 410.2 322 65.2
Actinidia06345 Actinidia chinensis HOM05D004378 ORTHO05D005269 4.1e-111 405.6 282 73.4
BcaB06g26167 Brassica carinata HOM05D004378 ORTHO05D005269 2.2e-109 399.8 333 63.4
BcaC01g03532 Brassica carinata HOM05D004378 ORTHO05D005269 3.8e-109 399.1 322 63.4
C03p51390 Brassica napus HOM05D004378 ORTHO05D005269 3.8e-109 399.1 322 63.4
BraA03t13351Z Brassica rapa HOM05D004378 ORTHO05D005269 8.5e-109 397.9 322 63.4
HPP92_024875 Vanilla planifolia HOM05D004378 ORTHO05D005269 1.5e-108 397.1 318 61.9
A03p41980 Brassica napus HOM05D004378 ORTHO05D005269 7.2e-108 394.8 322 63.0
BolC3t17425H Brassica oleracea HOM05D004378 ORTHO05D005269 3.6e-107 392.5 323 63.2
SEGI_31334 Sequoiadendron giganteum HOM05D004378 ORTHO05D005269 2.3e-101 373.2 295 62.4
Lj1A330G22 Lonicera japonica HOM05D004378 ORTHO05D005269 1.1e-100 370.9 279 71.3
vmacro04153 Vaccinium macrocarpon HOM05D004378 ORTHO05D005269 1.4e-98 364.0 427 50.8
BcaC05g28205 Brassica carinata HOM05D004378 ORTHO05D005269 8.9e-98 361.3 321 60.1
SHI29790 Sapria himalayana HOM05D004378 ORTHO05D005269 4.1e-95 352.4 291 62.9
AL3G34880 Arabidopsis lyrata HOM05D004378 ORTHO05D005269 2.0e-94 350.1 262 65.3
SMO117G0234 Selaginella moellendorffii HOM05D004378 ORTHO05D005269 1.7e-85 320.5 288 55.2
BolC1t04284H Brassica oleracea HOM05D004378 ORTHO05D005269 6.2e-83 312.0 257 61.1
Mapoly0080s0045 Marchantia polymorpha HOM05D004378 ORTHO05D005269 8.1e-83 311.6 317 52.1
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis HOM05D004378 ORTHO05D005269 2.6e-81 306.6 265 58.9
MSTRG.21374 Avicennia marina HOM05D004378 ORTHO05D005269 2.9e-80 303.1 184 81.0
Sc09g0000750 Simmondsia chinensis HOM05D004378 ORTHO05D005269 1.1e-79 301.2 210 72.9
Cpa.g.sc84.48 Carica papaya HOM05D004378 ORTHO05D005269 1.4e-79 300.8 184 79.9
Pp3c16_12820 Physcomitrium patens HOM05D004378 ORTHO05D005269 9.2e-79 298.1 298 54.0
Pp3c27_5530 Physcomitrium patens HOM05D004378 ORTHO05D005269 6.0e-78 295.4 287 54.7
CAN.G494.6 Capsicum annuum HOM05D004378 ORTHO05D005269 1.9e-76 290.4 184 77.2
FAN21G1987 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.5e-73 280.8 183 77.6
MD03G1174500 Malus domestica HOM05D004378 ORTHO05D005269 5.8e-73 278.9 180 75.0
Peaxi162Scf00004g02528 Petunia axillaris HOM05D004378 ORTHO05D005269 4.9e-72 275.8 283 55.1
Lalb_Chr20g0115221 Lupinus albus HOM05D004378 ORTHO05D005269 4.1e-71 272.7 179 75.4
CBR_g54322 Chara braunii HOM05D004378 ORTHO05D005269 1.6e-62 244.2 281 47.0
TAR057G0002 Trochodendron aralioides HOM05D004378 ORTHO05D005269 1.3e-51 208.0 138 77.5
MSTRG.21373 Avicennia marina HOM05D004378 ORTHO05D005269 2.4e-47 193.7 131 74.0
Lalb_Chr20g0115231 Lupinus albus HOM05D004378 ORTHO05D005269 1.6e-46 191.0 144 68.1
TAR623G1006 Trochodendron aralioides HOM05D004378 ORTHO05D005269 1.0e-45 188.3 126 74.6
AUR62019307 Chenopodium quinoa HOM05D004378 ORTHO05D005269 1.7e-40 171.0 117 68.4
SHI32640 Sapria himalayana HOM05D004378 ORTHO05D000001 1.5e-33 147.9 90 77.8
Sopen01g004010 Solanum pennellii HOM05D004378 ORTHO05D005269 3.2e-31 140.2 108 68.5
Cre02.g084050 Chlamydomonas reinhardtii HOM05D004378 ORTHO05D005269 4.2e-23 113.2 270 25.9
Solyc03g096225.1 Solanum lycopersicum HOM05D004378 ORTHO05D005269 9.4e-23 112.1 92 57.6
MCO14G148 Micromonas commoda HOM05D004378 ORTHO05D005269 1.5e-20 104.8 332 27.7


User provided reference genes

Program Settings