Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 1.7e-114 416.0 213 100.0
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 4.3e-97 358.2 210 88.1
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 3.8e-93 345.1 217 84.3
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 6.0e-91 337.8 198 86.9
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 2.6e-86 322.4 215 79.1
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 1.3e-85 320.1 213 77.9
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 9.3e-84 313.9 209 76.6
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 1.2e-83 313.5 203 78.8
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 2.1e-83 312.8 202 78.7
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 6.0e-83 311.2 203 78.8
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 2.3e-82 309.3 193 78.2
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 3.9e-82 308.5 213 74.2
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 3.9e-82 308.5 213 73.7
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 5.1e-82 308.1 205 75.6
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 6.7e-82 307.8 196 77.6
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 8.7e-82 307.4 211 74.4
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 1.3e-80 303.5 192 78.6
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.6e-80 303.1 198 78.3
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 1.6e-80 303.1 210 74.3
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 1.6e-80 303.1 216 70.4
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.1e-80 302.8 228 71.9
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 2.8e-80 302.4 198 78.3
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 3.7e-80 302.0 202 76.7
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 3.7e-80 302.0 215 74.0
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 3.7e-80 302.0 211 72.0
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 6.2e-80 301.2 198 77.8
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 1.1e-79 300.4 211 73.0
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 1.8e-79 299.7 215 74.0
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.4e-79 299.3 197 77.2
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.4e-79 299.3 213 74.2
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 3.1e-79 298.9 207 72.5
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 3.1e-79 298.9 202 75.7
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 3.1e-79 298.9 201 75.6
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 4.1e-79 298.5 198 76.8
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 5.3e-79 298.1 213 74.2
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 9.0e-79 297.4 201 74.1
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 1.5e-78 296.6 196 76.0
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 1.5e-78 296.6 200 76.0
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.5e-78 296.6 214 72.9
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.4e-78 295.4 207 74.4
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.4e-78 295.4 207 74.4
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 3.4e-78 295.4 200 75.5
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 5.8e-78 294.7 203 74.9
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 1.0e-77 293.9 203 73.9
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 1.0e-77 293.9 211 72.5
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 1.0e-77 293.9 174 80.5
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 1.3e-77 293.5 213 71.4
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 1.7e-77 293.1 198 74.7
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.2e-77 292.7 202 72.8
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 3.8e-77 292.0 203 74.4
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 5.0e-77 291.6 209 73.7
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 6.5e-77 291.2 215 67.9
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 8.4e-77 290.8 202 74.8
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 8.4e-77 290.8 210 70.5
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 8.4e-77 290.8 201 71.6
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 1.4e-76 290.0 208 73.1
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 1.4e-76 290.0 203 70.9
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 1.4e-76 290.0 203 73.9
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 1.9e-76 289.7 203 73.9
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.9e-76 289.7 202 72.3
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 7.2e-76 287.7 205 71.7
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 9.3e-76 287.3 205 71.2
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 1.2e-75 287.0 161 86.3
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 1.6e-75 286.6 200 73.0
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 2.1e-75 286.2 200 71.5
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 4.6e-75 285.0 216 70.8
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.0e-74 283.9 205 73.2
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 3.9e-74 282.0 205 72.7
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 6.7e-74 281.2 212 70.8
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 8.7e-74 280.8 201 73.1
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 8.7e-74 280.8 205 72.2
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 1.9e-73 279.6 200 71.0
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 1.9e-73 279.6 205 71.7
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 1.9e-73 279.6 206 70.4
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 1.9e-73 279.6 228 65.4
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.9e-73 279.6 205 64.9
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 3.3e-73 278.9 209 68.9
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 3.3e-73 278.9 205 70.2
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 8.2e-72 274.2 197 70.1
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 8.2e-72 274.2 203 67.5
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.4e-71 273.5 200 70.0
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 3.1e-71 272.3 205 68.3
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 4.1e-71 271.9 198 70.2
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 4.1e-71 271.9 199 70.4
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.2e-70 270.4 160 81.9
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 2.0e-70 269.6 297 53.2
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 2.6e-70 269.2 205 67.3
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 7.7e-70 267.7 205 66.3
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 2.9e-69 265.8 204 66.7
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 1.1e-68 263.8 213 66.2
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.1e-68 263.8 194 69.1
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 1.4e-68 263.5 205 66.3
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 2.5e-68 262.7 213 66.2
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 2.5e-68 262.7 200 67.5
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 2.5e-68 262.7 204 66.2
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 1.6e-67 260.0 199 67.8
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 1.6e-67 260.0 204 66.7
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 1.6e-67 260.0 192 67.7
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 4.6e-67 258.5 213 65.3
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 6.1e-67 258.1 201 65.2
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 6.1e-67 258.1 201 65.2
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 7.9e-67 257.7 205 65.9
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 1.0e-66 257.3 206 64.1
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 1.0e-66 257.3 208 63.9
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 1.8e-66 256.5 173 72.8
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 2.3e-66 256.1 193 68.9
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 3.0e-66 255.8 194 67.0
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 1.5e-65 253.4 207 63.3
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 3.3e-65 252.3 195 67.7
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 4.3e-65 251.9 219 63.5
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 7.4e-65 251.1 207 63.8
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 9.7e-65 250.8 219 63.0
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 9.7e-65 250.8 193 67.4
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 1.3e-64 250.4 199 66.8
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 2.8e-64 249.2 160 76.2
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 1.8e-63 246.5 168 70.8
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.4e-63 246.1 169 73.4
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 1.2e-62 243.8 211 63.5
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 2.0e-62 243.0 196 66.3
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 5.0e-61 238.4 170 70.0
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 4.4e-57 225.3 193 64.2
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 1.7e-56 223.4 164 71.3
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 1.1e-55 220.7 208 59.6
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 1.8e-55 219.9 128 84.4
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 1.7e-53 213.4 121 84.3
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 3.2e-52 209.1 193 57.0
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 6.1e-51 204.9 127 78.7
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 9.7e-49 197.6 157 66.9
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 5.9e-46 188.3 170 55.3
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 1.3e-45 187.2 120 73.3
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 2.2e-45 186.4 200 54.0
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 1.9e-44 183.3 186 52.2
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.6e-43 180.3 153 57.5
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.1e-43 179.9 191 52.9
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 1.4e-42 177.2 107 82.2
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 1.8e-42 176.8 97 87.6
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 1.8e-42 176.8 184 56.0
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.2e-41 174.1 179 50.8
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 3.8e-37 159.1 95 77.9
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 4.7e-35 152.1 183 47.0
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 2.3e-34 149.8 152 49.3
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.3e-32 144.1 170 51.2
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 4.9e-32 142.1 106 67.9
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 5.9e-22 108.6 210 37.6
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 6.8e-18 95.1 98 56.1
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 1.5e-17 94.0 55 72.7
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 3.4e-17 92.8 59 69.5
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 2.2e-16 90.1 214 30.8
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 6.4e-16 88.6 68 60.3
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 1.9e-15 87.0 67 59.7
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 5.4e-15 85.5 176 34.7
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 1.2e-11 74.3 47 76.6
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 2.8e-11 73.2 95 45.3
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 2.8e-11 73.2 40 90.0
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 4.0e-10 69.3 53 62.3
CSS0035454 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D015543 4.6e-06 55.8 59 52.5


User provided reference genes

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