Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0050001 Helianthus annuus HOM05D005791 ORTHO05D007452 2.6e-33 144.8 73 100.0
HanXRQChr17g0559391 Helianthus annuus HOM05D005791 ORTHO05D007452 4.4e-25 117.5 98 68.4
HanXRQChr05g0144231 Helianthus annuus HOM05D005791 ORTHO05D007452 1.5e-17 92.4 98 58.2
HPP92_024988 Vanilla planifolia HOM05D005791 ORTHO05D007452 4.4e-17 90.9 62 77.4
Sed0013812 Sechium edule HOM05D005791 ORTHO05D007452 9.8e-17 89.7 52 84.6
PSO339G3520 Papaver somniferum HOM05D005791 ORTHO05D007452 1.7e-16 89.0 52 86.5
PSO384G5040 Papaver somniferum HOM05D005791 ORTHO05D007452 1.7e-16 89.0 52 86.5
GSVIVG01032867001 Vitis vinifera HOM05D005791 ORTHO05D007452 2.2e-16 88.6 53 84.9
FvH4_7g26290 Fragaria vesca HOM05D005791 ORTHO05D007452 3.7e-16 87.8 52 84.6
FAN06G4413 Fragaria x ananassa HOM05D005791 ORTHO05D007452 3.7e-16 87.8 52 84.6
FAN10G1145 Fragaria x ananassa HOM05D005791 ORTHO05D007452 3.7e-16 87.8 52 84.6
Atru.chr12.209 Acer truncatum HOM05D005791 ORTHO05D007452 4.9e-16 87.4 53 84.9
ClCG11G005490 Citrullus lanatus HOM05D005791 ORTHO05D007452 6.3e-16 87.0 52 82.7
CsaV3_5G039240 Cucumis sativus L. HOM05D005791 ORTHO05D007452 6.3e-16 87.0 52 82.7
Oeu044175.1 Olea europaea HOM05D005791 ORTHO05D007452 6.3e-16 87.0 53 79.2
Sabra19G0078900 Salix brachista HOM05D005791 ORTHO05D007452 6.3e-16 87.0 53 84.9
TAR636G2576 Trochodendron aralioides HOM05D005791 ORTHO05D007452 6.3e-16 87.0 53 83.0
Aa31LG10G11340 Aethionema arabicum HOM05D005791 ORTHO05D007452 8.3e-16 86.7 53 84.9
Cc02_g05050 Coffea canephora HOM05D005791 ORTHO05D007452 8.3e-16 86.7 53 81.1
ATR1127G121 Amborella trichopoda HOM05D005791 ORTHO05D007452 1.1e-15 86.3 53 83.0
Migut.F01222 Erythranthe guttata HOM05D005791 ORTHO05D007452 1.1e-15 86.3 53 83.0
Potri.019G065700 Populus trichocarpa HOM05D005791 ORTHO05D007452 1.1e-15 86.3 53 83.0
BcaB02g07651 Brassica carinata HOM05D005791 ORTHO05D007452 1.4e-15 85.9 53 83.0
CANSAT56G2835 Cannabis sativa HOM05D005791 ORTHO05D007452 1.4e-15 85.9 53 81.1
AUR62032550 Chenopodium quinoa HOM05D005791 ORTHO05D007452 1.4e-15 85.9 53 83.0
Ciclev10031975m.g Citrus clementina HOM05D005791 ORTHO05D007452 1.4e-15 85.9 53 81.1
MELO3C022102.2 Cucumis melo HOM05D005791 ORTHO05D007452 1.4e-15 85.9 52 80.8
Eucgr.G03169 Eucalyptus grandis HOM05D005791 ORTHO05D007452 1.4e-15 85.9 53 81.1
PGR044G2580 Punica granatum HOM05D005791 ORTHO05D007452 1.4e-15 85.9 53 81.1
Cpa.g.sc1097.1 Carica papaya HOM05D005791 ORTHO05D007452 1.8e-15 85.5 52 82.7
CDE12G0791 Ceratophyllum demersum HOM05D005791 ORTHO05D007452 1.8e-15 85.5 52 82.7
AUR62031667 Chenopodium quinoa HOM05D005791 ORTHO05D007452 1.8e-15 85.5 53 81.1
Nitab4.5_0001493g0030 Nicotiana tabacum HOM05D005791 ORTHO05D007452 1.8e-15 85.5 53 83.0
QL08p065276 Quercus lobata HOM05D005791 ORTHO05D007452 1.8e-15 85.5 53 81.1
COL.COLO4_19494 Corchorus olitorius HOM05D005791 ORTHO05D007452 2.4e-15 85.1 53 81.1
Dinv21869 Davidia involucrata HOM05D005791 ORTHO05D007452 2.4e-15 85.1 52 84.6
Duzib106G2079 Durio zibethinus HOM05D005791 ORTHO05D007452 2.4e-15 85.1 53 81.1
Hma1.2p1_0264F.1_g105800 Hydrangea macrophylla HOM05D005791 ORTHO05D007452 2.4e-15 85.1 52 84.6
TWI09G0105 Tripterygium wilfordii HOM05D005791 ORTHO05D007452 2.4e-15 85.1 53 81.1
EL10Ac2g02691 Beta vulgaris HOM05D005791 ORTHO05D007452 3.2e-15 84.7 53 81.1
Thhalv10006076m.g Eutrema salsugineum HOM05D005791 ORTHO05D007452 3.2e-15 84.7 53 79.2
Glyma.04G224400 Glycine max HOM05D005791 ORTHO05D007452 3.2e-15 84.7 53 75.5
HanXRQChr08g0222991 Helianthus annuus HOM05D005791 ORTHO05D007452 3.2e-15 84.7 50 86.0
Nn2g10215 Nelumbo nucifera HOM05D005791 ORTHO05D007452 3.2e-15 84.7 53 81.1
RcHm_v2.0_Chr1g0372751 Rosa chinensis HOM05D005791 ORTHO05D007452 3.2e-15 84.7 52 82.7
Sp5g06080 Schrenkiella parvula HOM05D005791 ORTHO05D007452 3.2e-15 84.7 52 82.7
THA.LOC104803216 Tarenaya hassleriana HOM05D005791 ORTHO05D007452 3.2e-15 84.7 50 84.0
arahy.Tifrunner.gnm1.ann1.B7UYEY Arachis hypogaea HOM05D005791 ORTHO05D007452 4.1e-15 84.3 53 79.2
arahy.Tifrunner.gnm1.ann1.PBP7IS Arachis hypogaea HOM05D005791 ORTHO05D007452 4.1e-15 84.3 53 79.2
Glyma.06G140300 Glycine max HOM05D005791 ORTHO05D007452 4.1e-15 84.3 53 75.5
Gohir.A05G276800 Gossypium hirsutum HOM05D005791 ORTHO05D007452 4.1e-15 84.3 53 79.2
Gohir.D05G278500 Gossypium hirsutum HOM05D005791 ORTHO05D007452 4.1e-15 84.3 53 79.2
Gorai.009G292000 Gossypium raimondii HOM05D005791 ORTHO05D007452 4.1e-15 84.3 53 79.2
Nitab4.5_0000103g0040 Nicotiana tabacum HOM05D005791 ORTHO05D007452 4.1e-15 84.3 53 79.2
CSS0010135 Camellia sinensis var. sinensis HOM05D005791 ORTHO05D007452 5.4e-15 84.0 53 79.2
CAN.G77.10 Capsicum annuum HOM05D005791 ORTHO05D007452 5.4e-15 84.0 53 79.2
Peaxi162Scf00073g02117 Petunia axillaris HOM05D005791 ORTHO05D007452 5.4e-15 84.0 55 76.4
Sopen03g025380 Solanum pennellii HOM05D005791 ORTHO05D007452 5.4e-15 84.0 53 79.2
Lalb_Chr08g0239301 Lupinus albus HOM05D005791 ORTHO05D007452 7.0e-15 83.6 52 78.8
MD07G1238300 Malus domestica HOM05D005791 ORTHO05D007452 7.0e-15 83.6 53 79.2
Psat5g069880 Pisum sativum HOM05D005791 ORTHO05D007452 7.0e-15 83.6 52 76.9
Solyc03g095360.3 Solanum lycopersicum HOM05D005791 ORTHO05D007452 7.0e-15 83.6 53 77.4
Thecc.10G187200 Theobroma cacao HOM05D005791 ORTHO05D007452 7.0e-15 83.6 53 79.2
BcaC08g44785 Brassica carinata HOM05D005791 ORTHO05D007452 9.2e-15 83.2 52 80.8
A07p22940 Brassica napus HOM05D005791 ORTHO05D007452 9.2e-15 83.2 52 80.8
C06p23560 Brassica napus HOM05D005791 ORTHO05D007452 9.2e-15 83.2 52 80.8
BraA07t29959Z Brassica rapa HOM05D005791 ORTHO05D007452 9.2e-15 83.2 52 80.8
Carub.0005s2323 Capsella rubella HOM05D005791 ORTHO05D007452 9.2e-15 83.2 52 78.8
CiPaw.02G199500 Carya illinoinensis HOM05D005791 ORTHO05D007452 1.2e-14 82.8 53 79.2
DCAR_018050 Daucus carota HOM05D005791 ORTHO05D007452 1.2e-14 82.8 53 77.4
Rhsim03G0154600 Rhododendron simsii HOM05D005791 ORTHO05D007452 1.2e-14 82.8 53 79.2
Rhsim03G0154800 Rhododendron simsii HOM05D005791 ORTHO05D007452 1.2e-14 82.8 53 79.2
SalBow2G0183 Salvia bowleyana HOM05D005791 ORTHO05D007452 1.2e-14 82.8 53 77.4
vmacro06873 Vaccinium macrocarpon HOM05D005791 ORTHO05D007452 1.2e-14 82.8 53 79.2
Actinidia31644 Actinidia chinensis HOM05D005791 ORTHO05D007452 1.6e-14 82.4 53 79.2
DCAR_014656 Daucus carota HOM05D005791 ORTHO05D007452 1.6e-14 82.4 53 75.5
vmacro06874 Vaccinium macrocarpon HOM05D005791 ORTHO05D007452 1.6e-14 82.4 53 79.2
Ah.10g030630 Amaranthus hybridus HOM05D005791 ORTHO05D007452 2.0e-14 82.0 53 79.2
AT3G56460 Arabidopsis thaliana HOM05D005791 ORTHO05D007452 2.0e-14 82.0 52 78.8
Cfa001181 Carpinus fangiana HOM05D005791 ORTHO05D007452 2.0e-14 82.0 53 77.4
ECA233G3482 Erigeron canadensis HOM05D005791 ORTHO05D007452 2.0e-14 82.0 53 77.4
Lsat_1_v5_gn_8_11180 Lactuca sativa HOM05D005791 ORTHO05D007452 2.0e-14 82.0 50 82.0
Lj1A970G57 Lonicera japonica HOM05D005791 ORTHO05D007452 2.0e-14 82.0 97 51.5
Sc14g0005690 Simmondsia chinensis HOM05D005791 ORTHO05D007452 2.0e-14 82.0 56 71.4
VMungo1309G2173 Vigna mungo HOM05D005791 ORTHO05D007452 2.0e-14 82.0 52 76.9
Aqoxy2G00691 Aquilegia oxysepala HOM05D005791 ORTHO05D007452 2.7e-14 81.6 53 79.2
BolC6t37528H Brassica oleracea HOM05D005791 ORTHO05D007452 2.7e-14 81.6 52 78.8
CARHR166580 Cardamine hirsuta HOM05D005791 ORTHO05D007452 2.7e-14 81.6 50 82.0
Gohir.D13G009100 Gossypium hirsutum HOM05D005791 ORTHO05D007452 2.7e-14 81.6 53 79.2
Gorai.013G009900 Gossypium raimondii HOM05D005791 ORTHO05D007452 2.7e-14 81.6 53 79.2
Lsat_1_v5_gn_8_11160 Lactuca sativa HOM05D005791 ORTHO05D007452 2.7e-14 81.6 50 82.0
Hund13427 Selenicereus undatus HOM05D005791 ORTHO05D007452 2.7e-14 81.6 53 75.5
unitig_736.g22425 Utricularia gibba HOM05D005791 ORTHO05D007452 2.7e-14 81.6 50 80.0
MSTRG.153 Avicennia marina HOM05D005791 ORTHO05D007452 3.5e-14 81.3 53 81.1
Ca_16850_v3 Cicer arietinum L. HOM05D005791 ORTHO05D007452 3.5e-14 81.3 54 72.2
Sopen03g025370 Solanum pennellii HOM05D005791 ORTHO05D007452 3.5e-14 81.3 53 77.4
AL5G37780 Arabidopsis lyrata HOM05D005791 ORTHO05D007452 4.6e-14 80.9 52 76.9
AL5G37790 Arabidopsis lyrata HOM05D005791 ORTHO05D007452 4.6e-14 80.9 52 76.9
Lj1g0000176 Lotus japonicus HOM05D005791 ORTHO05D007452 4.6e-14 80.9 53 73.6
Os05g0313500 Oryza sativa ssp. japonica HOM05D005791 ORTHO05D007452 4.6e-14 80.9 53 75.5
SGA_v2.0_scaffold78G25489 Striga asiatica HOM05D005791 ORTHO05D007452 4.6e-14 80.9 50 82.0
Phvul.009G041600 Phaseolus vulgaris HOM05D005791 ORTHO05D007452 5.9e-14 80.5 97 49.5
MBI15_g31027_MAGBIO Magnolia biondii HOM05D005791 ORTHO05D007452 7.8e-14 80.1 55 72.7
Manes.10G004300 Manihot esculenta HOM05D005791 ORTHO05D007452 1.3e-13 79.3 53 75.5
TPR.G13959 Trifolium pratense HOM05D005791 ORTHO05D007452 1.3e-13 79.3 52 75.0
Zm00001eb070150 Zea mays HOM05D005791 ORTHO05D007452 1.7e-13 79.0 53 75.5
ECA233G0423 Erigeron canadensis HOM05D005791 ORTHO05D007452 2.9e-13 78.2 63 66.7
HanXRQChr08g0222851 Helianthus annuus HOM05D005791 ORTHO05D007452 2.9e-13 78.2 97 50.5
MBI15_g31024_MAGBIO Magnolia biondii HOM05D005791 ORTHO05D007452 3.9e-13 77.8 53 73.6
Medtr3g093620 Medicago truncatula HOM05D005791 ORTHO05D007452 5.0e-13 77.4 50 72.0
Gohir.D13G009200 Gossypium hirsutum HOM05D005791 ORTHO05D007452 6.6e-13 77.0 53 73.6
CDE10G1308 Ceratophyllum demersum HOM05D005791 ORTHO05D007452 1.1e-12 76.3 97 45.4
HPP92_024985 Vanilla planifolia HOM05D005791 ORTHO05D007452 1.9e-12 75.5 52 75.0
Pp3c16_1190 Physcomitrium patens HOM05D005791 ORTHO05D007452 2.5e-12 75.1 53 67.9
HPP92_024990 Vanilla planifolia HOM05D005791 ORTHO05D007452 5.6e-12 73.9 53 73.6
AagrBONN_evm.TU.Sc2ySwM_362.2815 Anthoceros agrestis HOM05D005791 ORTHO05D007452 7.3e-12 73.6 50 70.0
Gohir.A13G008500 Gossypium hirsutum HOM05D005791 ORTHO05D007452 7.3e-12 73.6 53 71.7
Mapoly0006s0302 Marchantia polymorpha HOM05D005791 ORTHO05D007452 6.1e-11 70.5 50 70.0
SMO164G0125 Selaginella moellendorffii HOM05D005791 ORTHO05D007452 1.8e-10 68.9 53 62.3
MD11G1140100 Malus domestica HOM05D005791 ORTHO05D007452 4.4e-09 64.3 42 73.8
Gohir.A13G008400 Gossypium hirsutum HOM05D005791 ORTHO05D007452 2.4e-07 58.5 53 64.2
Cre16.g674050 Chlamydomonas reinhardtii HOM05D005791 ORTHO05D007452 2.7e-06 55.1 49 53.1


User provided reference genes

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